CX671690

Overview
NameCX671690
Unique NameCX671690
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4228 contig Csv1_Contig4228:1..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671690 vs. ExPASy Swiss-Prot
Match: HM13_MOUSE (Minor histocompatibility antigen H13 OS=Mus musculus GN=Hm13 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.245e-11
Identity = 44/149 (29.53%), Postives = 70/149 (46.98%), Query Frame = 2
Query:  338 NVILTACLTVYVGCYRSVK------PTPPSETMSNEHAMRFPFVGSAMXXXXXXXXXXXXXDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHW---NEDLIIWHFPYFRSLEI---EFTRSQIIAAIPGTFFCAWYASQKHWLANN 748
            +++L A L ++ G  RSV+       +   ET+++  A RFP + S               + +N +L+ YFFVLGI+ALS TI P + +F P ++      L+          EI   EF    ++     +    WY  +KHW+ANN
Sbjct:   38 SLLLMALLPIFFGALRSVRCARGKSSSDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHTISPFMNKFFPANFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSVVGVWYLLRKHWIANN 186          
BLAST of CX671690 vs. ExPASy Swiss-Prot
Match: HM13_HUMAN (Minor histocompatibility antigen H13 OS=Homo sapiens GN=HM13 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.462e-11
Identity = 44/149 (29.53%), Postives = 69/149 (46.31%), Query Frame = 2
Query:  338 NVILTACLTVYVGCYRSVK------PTPPSETMSNEHAMRFPFVGSAMXXXXXXXXXXXXXDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHW---NEDLIIWHFPYFRSLEI---EFTRSQIIAAIPGTFFCAWYASQKHWLANN 748
            +++L A L ++ G  RSV+       +   ET+++  A RFP + S               + +N +L+ YFFVLGI+ALS TI P + +F P  +      L+          EI   EF    ++     +    WY  +KHW+ANN
Sbjct:   38 SLLLMALLPIFFGALRSVRCARGKNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHTISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRKHWIANN 186          
The following BLAST results are available for this feature:
BLAST of CX671690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
HM13_MOUSE7.245e-1129.53Minor histocompatibility antigen H13 OS=Mus muscul... [more]
HM13_HUMAN9.462e-1129.53Minor histocompatibility antigen H13 OS=Homo sapie... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_12E10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12E10-J20-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671690 ID=CX671690; Name=CX671690; organism=Citrus sinensis; type=EST; length=750bp
GTAAAGGCCAGTTGAGTGAAAAATCAAAACCAAAACCCTATTAGATTTTT
TCTTTTTCAAAAAAACCTCGAGCTTTGTCTCCGATCTGAACGTTTAGCGA
CCGTTAAGAGAGAGAAGGGAAAAAAAAAGAAGAGACTTGACTGACAGATC
CTTTTTTAATCTTTCTCTTCGTATCAGGTTGCGAGGGTTTTCGGTTCTGT
GAATTTCGTTGATTCGGCCGCTGAATTGATTGAATAAAGCCAGAAAAAAA
ACAATGAAGAATTGTGAACGGATAGCGAATTTGGCTTTAGCAGGTTTAAC
ATTGGCACCACTTCTTGTGAAGGTAGATCCAAACTTAAATGTTATATTGA
CAGCATGTCTCACAGTTTATGTGGGCTGCTATCGATCTGTCAAACCAACT
CCACCATCAGAGACGATGTCTAATGAACATGCCATGCGCTTTCCTTTTGT
TGGAAGTGCTATGTTGTTATCACTGTTCTTACTTTTCAAGTTTCTATCTA
AAGACCTGGTCAACGCTGTATTGACCTGCTACTTTTTCGTTCTTGGGATC
ATTGCCCTTTCGGCAACTATCTTACCAGCTGTGAAACGCTTCTTGCCAAA
CCATTGGAATGAGGACCTAATTATATGGCATTTCCCTTATTTCCGTTCTT
TGGAGATTGAGTTCACAAGGTCTCAGATCATTGCTGCAATCCCTGGGACG
TTTTTTTGTGCATGGTATGCTTCACAGAAACATTGGCTAGCTAACAATAC
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