CX671689

Overview
NameCX671689
Unique NameCX671689
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4228 contig Csv1_Contig4228:676..1542. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671689 vs. ExPASy Swiss-Prot
Match: HM13_HUMAN (Minor histocompatibility antigen H13 OS=Homo sapiens GN=HM13 PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.438e-50
Identity = 105/200 (52.50%), Postives = 137/200 (68.50%), Query Frame = -3
Query:  263 WYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRD------TARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSR-YFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFDESK----TAAVVSQESSDAKTSKKVE 829
            WY  +KHW+ANN  GLAF + G+E+L L +  TG ILL GLF+YD+FWVF T VMV+VAKSF+APIKL+FP +D       A  F+MLGLGD+VIPGIF+AL LRFD+S  K +  YF ++F  Y  GL LTI +M+ F+ AQPALLY+VPA IGF     +  GEV ++  ++ES      A   S+E ++A  SK +E
Sbjct:  175 WYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKSFEAPIKLVFP-QDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYEESNPKDPAAVTESKEGTEASASKGLE 373          
BLAST of CX671689 vs. ExPASy Swiss-Prot
Match: HM13_MOUSE (Minor histocompatibility antigen H13 OS=Mus musculus GN=Hm13 PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.659e-50
Identity = 106/201 (52.74%), Postives = 137/201 (68.16%), Query Frame = -3
Query:  263 WYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRD------TARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSR-YFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFDESK-----TAAVVSQESSDAKTSKKVE 829
            WY  +KHW+ANN  GLAF + G+E+L L +  TG ILL GLF+YDIFWVF T VMV+VAKSF+APIKL+FP +D       A  F+MLGLGDIVIPGIF+AL LRFD+S  K +  YF ++F  Y  GL LTI +M+ F+ AQPALLY+VPA IGF     +  GEV ++  ++ES            +ES++A  SK++E
Sbjct:  175 WYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFP-QDLLEKGLEADNFAMLGLGDIVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVAEMFSYEESNPKDPAAETESKEESTEASASKRLE 374          
BLAST of CX671689 vs. ExPASy Swiss-Prot
Match: IMP2_CAEEL (Intramembrane protease 2 OS=Caenorhabditis elegans GN=imp-2 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.147e-37
Identity = 90/185 (48.65%), Postives = 111/185 (60.00%), Query Frame = -3
Query:  320 QKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTR------DTARPFSMLGLGDIVIPGIFVALALRFD-----------VSRG--KGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFDESK 817
            ++HW+ NN +G++F I GIE L L SFK G++LL GLF YDIFWVF T VM SVAK  DAPI L FP          A   SMLGLGDIVIPGIF+AL  RFD             +G  KG  YF    + Y  GL +T+ VM+ F+AAQPALLY+VP  +       +  GE+  L  +DES+
Sbjct:  266 KRHWITNNIIGVSFSILGIERLHLASFKAGSLLLVGLFFYDIFWVFGTDVMTSVAKGIDAPILLQFPQDIYRNGIMEASKHSMLGLGDIVIPGIFIALLRRFDYRVVQTTAESKAPQGSLKGRYYFVVTVVAYMAGLFITMAVMHHFKAAQPALLYLVPCCLFVPLLLAVIRGELSALWNYDESR 450          
BLAST of CX671689 vs. ExPASy Swiss-Prot
Match: YL8H_SCHPO (Probable intramembrane protease C25B8.17 OS=Schizosaccharomyces pombe GN=SPAC25B8.17 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.668e-31
Identity = 75/186 (40.32%), Postives = 103/186 (55.38%), Query Frame = -3
Query:  332 IIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTRDTARPFSMLGLGDIVIPGIFVALALRFDV--------SRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEF 865
            I A +       +Y   KHW+A+N L  A     I ++ + S+ TGA+LL  LF YDI++VF T VMV+VA   D P K + P        SMLGLGDIV+PG+ +AL  RFD+           K S YF++ F+ Y +GL +T   + +F+AAQPALLY+ PA I        +  E+K L  F
Sbjct:   93 ITATMSSIAIALFYFKTKHWMASNILAWALAANSISIMRIDSYNTGALLLGALFFYDIYFVFGTEVMVTVATGIDIPAKYVLPQFKNPTRLSMLGLGDIVMPGLMLALMYRFDLHYYINSTSQPKKHSTYFRNTFIAYGLGLGVTNFALYYFKAAQPALLYLSPACIVAPLLTAWYRDELKTLFSF 278          
BLAST of CX671689 vs. ExPASy Swiss-Prot
Match: YKK0_YEAST (Probable intramembrane protease YKL100C OS=Saccharomyces cerevisiae GN=YKL100C PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.836e-27
Identity = 73/206 (35.44%), Postives = 113/206 (54.85%), Query Frame = -3
Query:  290 WYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTR-DTAR---PFSMLGLGDIVIPGIFVALALRFDVSR---------------GKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQL-------LEFDESKTAAVVSQESS 829
            +Y S   WL +N + +   I  I  L L + K+GA++L  LF YDI +VF T VMV+VA + D P+KL  P + +TA+    FS+LGLGDI +PG+F+A+  ++D+ +                   +YF +A + Y   LV  ++ ++ F  AQPALLYIVP+++        WN + KQ        +E D+S   A+  +E+S
Sbjct:  322 FYLSPNDWLISNAVSMNMAIWSIAQLKLKNLKSGALILIALFFYDICFVFGTDVMVTVATNLDIPVKLSLPVKFNTAQNNFNFSILGLGDIALPGMFIAMCYKYDIWKWHLDHDDTEFHFLNWSYVGKYFITAMVSYVASLVSAMVSLSIFNTAQPALLYIVPSLLISTILVACWNKDFKQFWNFQYDTIEVDKSLKKAIEKKENS 527          
BLAST of CX671689 vs. ExPASy Swiss-Prot
Match: PSL1_MOUSE (Signal peptide peptidase-like 2B OS=Mus musculus GN=Sppl2b PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 5.527e-24
Identity = 63/174 (36.21%), Postives = 94/174 (54.02%), Query Frame = -3
Query:  350 WLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTP--------VMVSVAKSFD-------APIKLLFPTRDTA------RPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEV 808
            W+  +TLG+AFC+  ++ + L +FK   +LL  LF+YDIF+VF TP        +MV VA            P+ L  P  +T+      RPFS+LG GDI++PG+ VA   RFD+       YF +  + Y +GL++T + +   Q  QPALLY+VP  +       +W  E+
Sbjct:  315 WVLQDTLGIAFCLYMLKTIRLPTFKACTLLLLVLFIYDIFFVFITPFLTKSGNSIMVEVATGPSNSSTHEKLPMVLKVPRLNTSPLSLCDRPFSLLGFGDILVPGLLVAYCHRFDIQVQSSRIYFVACTIAYGLGLLVTFVALVLMQRGQPALLYLVPCTLLTSCTVALWRREL 488          
BLAST of CX671689 vs. ExPASy Swiss-Prot
Match: PSL1_HUMAN (Signal peptide peptidase-like 2B OS=Homo sapiens GN=SPPL2B PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 9.428e-24
Identity = 63/174 (36.21%), Postives = 94/174 (54.02%), Query Frame = -3
Query:  350 WLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTP--------VMVSVAKSFD-------APIKLLFPTRDTA------RPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEV 808
            W+  + LG+AFC+  ++ + L +FK   +LL  LF+YDIF+VF TP        +MV VA            P+ L  P  +++      RPFS+LG GDI++PG+ VA   RFD+       YF +  + Y VGL++T + +   Q  QPALLY+VP  +    A  +W  E+
Sbjct:  322 WVLQDALGIAFCLYMLKTIRLPTFKACTLLLLVLFLYDIFFVFITPFLTKSGSSIMVEVATGPSDSATREKLPMVLKVPRLNSSPLALCDRPFSLLGFGDILVPGLLVAYCHRFDIQVQSSRVYFVACTIAYGVGLLVTFVALALMQRGQPALLYLVPCTLVTSCAVALWRREL 495          
BLAST of CX671689 vs. ExPASy Swiss-Prot
Match: PSL1_RAT (Signal peptide peptidase-like 2B OS=Rattus norvegicus GN=Sppl2b PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.100e-23
Identity = 63/174 (36.21%), Postives = 93/174 (53.45%), Query Frame = -3
Query:  350 WLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTP--------VMVSVAKSFD-------APIKLLFPTRDTA------RPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEV 808
            W+  +TLG+AFC+  +  + L +FK   +LL  LFVYDIF+VF TP        +MV VA            P+ L  P  +T+      RPFS+LG GDI++PG+ VA   RFD+       YF +  + Y +GL++T + +   +  QPALLY+VP  +       +W  E+
Sbjct:  315 WVLQDTLGIAFCLYMLRTIRLPTFKACTLLLLVLFVYDIFFVFITPYLTKSGNSIMVEVATGPSNSSTHEKLPMVLKVPRLNTSPLSLCDRPFSLLGFGDILVPGLLVAYCHRFDIQVQSSRIYFVACTIAYGLGLLVTFVALVLMRHGQPALLYLVPCTLLTSCTVALWRREM 488          
BLAST of CX671689 vs. ExPASy Swiss-Prot
Match: PSL1_CHICK (Signal peptide peptidase-like 2B OS=Gallus gallus GN=SPPL2B PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.679e-23
Identity = 58/174 (33.33%), Postives = 92/174 (52.87%), Query Frame = -3
Query:  350 WLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSF---------------DAPIKLLFPTRDTA------RPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEV 808
            W+  + LG+AFC+  ++ + L +FK   +LL  LFVYD+F+VF TP +    +S                  P+ L  P  +++      RPFS+LG GDI++PG+ VA   RFD+       YF +  + Y +GL++T + +   Q  QPALLY+VP  +    +  +W  E+
Sbjct:  318 WVLQDALGIAFCLYMLKTIRLPTFKGCTLLLLVLFVYDVFFVFITPFLTKTGESIMVEVAAGPSDSATHEKLPMVLKVPRLNSSPLALCDRPFSLLGFGDILVPGLLVAYCHRFDIQVQSSRVYFVACTIAYGIGLLVTFVALALMQMGQPALLYLVPCTLITSFSVALWRKEL 491          
BLAST of CX671689 vs. ExPASy Swiss-Prot
Match: PSL2_HUMAN (Signal peptide peptidase-like 2A OS=Homo sapiens GN=SPPL2A PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 5.173e-22
Identity = 57/160 (35.62%), Postives = 86/160 (53.75%), Query Frame = -3
Query:  389 WLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTP--------VMVSVAKS-----------FDAPIKLLFPTRDTA-RPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 808
            W+  + LG+AFC+  I+ L L +FK+  ILL  L +YD+F+VF TP        +MV +A                P  + F        P S+LG GDI++PG+ +A   RFDV  G    Y+ S+ + Y +G++LT +V+   +  QPALLY+VP  +
Sbjct:  314 WILQDILGIAFCLNLIKTLKLPNFKSCVILLGLLLLYDVFFVFITPFITKNGESIMVELAAGPFGNNEKLPVVIRVPKLIYFSVMSVCLMPVSILGFGDIIVPGLLIAYCRRFDVQTGSSYIYYVSSTVAYAIGMILTFVVLVLMKKGQPALLYLVPCTL 473          
The following BLAST results are available for this feature:
BLAST of CX671689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
HM13_HUMAN3.438e-5052.50Minor histocompatibility antigen H13 OS=Homo sapie... [more]
HM13_MOUSE7.659e-5052.74Minor histocompatibility antigen H13 OS=Mus muscul... [more]
IMP2_CAEEL1.147e-3748.65Intramembrane protease 2 OS=Caenorhabditis elegans... [more]
YL8H_SCHPO4.668e-3140.32Probable intramembrane protease C25B8.17 OS=Schizo... [more]
YKK0_YEAST1.836e-2735.44Probable intramembrane protease YKL100C OS=Sacchar... [more]
PSL1_MOUSE5.527e-2436.21Signal peptide peptidase-like 2B OS=Mus musculus G... [more]
PSL1_HUMAN9.428e-2436.21Signal peptide peptidase-like 2B OS=Homo sapiens G... [more]
PSL1_RAT2.100e-2336.21Signal peptide peptidase-like 2B OS=Rattus norvegi... [more]
PSL1_CHICK4.679e-2333.33Signal peptide peptidase-like 2B OS=Gallus gallus ... [more]
PSL2_HUMAN5.173e-2235.63Signal peptide peptidase-like 2A OS=Homo sapiens G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12E10_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12E10-J20-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671689 ID=CX671689; Name=CX671689; organism=Citrus sinensis; type=EST; length=867bp
CTTTTTAAGTATAATGCATTTAAAAAATTAAATTAAATAAAGAAAAAAAT
CACAAAATATATCTGAAATAGTTGTCTCACTATAGTTGTCTCACTATAAG
AGGCTAAAATATTATTTCTTGCTTAATGCCAAAATCTTTTACAATTGTTT
GCAGGTTGCATAAGTTAGCTTGGATTGAGCTTGCACAGCGTTGATCCTCA
AAAGGAGAAATAAAAGATATTTCTTTGCTAAAATGGTCCATTGTAGATGG
CATTTTAAATTATTCGACTTTCTTGCTAGTTTTGGCATCGCTACTTTCTT
GTGACACAACCGCGGCAGTCTTAGACTCATCAAACTCCAACAACTGTTTG
ACTTCGCCGTTCCATATGCAGTGAGCGGCCAAGAATCCAATTACAGCAGG
CACAATATACAAAAGTGCAGGCTGTGCAGCCTGAAACCAGTTCATGACAA
TGATTGTTAGGACTAAACCAACTGTATATCCCAGAAAAGCGCTCTTGAAG
TACCGGCTTCCTTTCCCTCTGGACACATCAAATCGCAATGCTAGTGCCAC
AAAGATACCAGGAATTACAATGTCGCCAAGTCCAAGCATGGAAAATGGTC
GGGCAGTGTCTCTCGTTGGGAACAAAAGCTTGATAGGAGCGTCAAAAGAT
TTTGCAACACTAACCATTACTGGAGTGAAGAAAACCCAGAAAATATCATA
TACAAAAAGTCCAGCCAAAAGAATGGCACCAGTCTTGAAAGATCCAAGAG
AAAGCATTTCAATTCCCTGAATGCAGAAGGCAAGGCCCAAGGTATTGTTA
GCTAGCCAATGTTTCTGTGAAGCATACCATGCACAAAAAAACGTCCCAGG
GATTGCAGCAATGATCT
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