CX671682

Overview
NameCX671682
Unique NameCX671682
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1351 contig Csv1_Contig1351:6..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671682 vs. ExPASy Swiss-Prot
Match: RS16_GOSHI (40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.895e-71
Identity = 134/139 (96.40%), Postives = 135/139 (97.12%), Query Frame = 1
Query:   76 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 492
            ESVQCFGRKKTAVAVT+CKRGRGLIKINGCPIELVEPEILRFKA EPILLLGR RF GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILV YDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct:    7 ESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQRFTGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 145          
BLAST of CX671682 vs. ExPASy Swiss-Prot
Match: RS16_FRIAG (40S ribosomal protein S16 OS=Fritillaria agrestis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.096e-70
Identity = 129/144 (89.58%), Postives = 139/144 (96.53%), Query Frame = 1
Query:   61 AAPKTESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 492
            A P TESVQCFGRKKTAVAVT+CKRGRGLIK+NG PIELV+PEILR+KAFEPILLLGRHRF GVDMRIRV+GGG TSQIYAIRQSIAKALVA+YQKYVDEQ+KKE+KDIL+RYDRTLLVADPRRCEPKKFGGRGAR+RFQKSYR
Sbjct:    2 ATPATESVQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRHRFVGVDMRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 145          
BLAST of CX671682 vs. ExPASy Swiss-Prot
Match: RS161_ARATH (40S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.669e-70
Identity = 130/147 (88.44%), Postives = 139/147 (94.56%), Query Frame = 1
Query:   52 MATAAPKTESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 492
            MAT  P TESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK FEPILLLG+HRF GV+MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGAR+R+QKSYR
Sbjct:    1 MATQ-PATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146          
BLAST of CX671682 vs. ExPASy Swiss-Prot
Match: RS163_ARATH (40S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 6.098e-70
Identity = 129/147 (87.76%), Postives = 139/147 (94.56%), Query Frame = 1
Query:   52 MATAAPKTESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 492
            MAT  P TESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK FEP+LLLG+HRF GV+MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGAR+R+QKSYR
Sbjct:    1 MATQ-PATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146          
BLAST of CX671682 vs. ExPASy Swiss-Prot
Match: RS162_ARATH (40S ribosomal protein S16-2 OS=Arabidopsis thaliana GN=RPS16B PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.651e-65
Identity = 123/147 (83.67%), Postives = 133/147 (90.48%), Query Frame = 1
Query:   52 MATAAPKTESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 492
            MAT  P  ESVQCFGRKKTA AVTYCKRG G+IK+NG PIEL +PEILRFK FEP+LLLG+HRF GVDMRIR  GGG+TS++YAIRQSIAKALVA+YQKYVDEQSKKEIKDIL+RYDRTLLVADPRRCE KKFGG GARARFQKSYR
Sbjct:    1 MATQ-PAKESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVDMRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRCESKKFGGPGARARFQKSYR 146          
BLAST of CX671682 vs. ExPASy Swiss-Prot
Match: RS16_TORRU (40S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.462e-65
Identity = 122/139 (87.77%), Postives = 134/139 (96.40%), Query Frame = 1
Query:   76 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 492
            ESVQCFGRKKTAVAVTYC+RGRGLI++   PIELVEPEILR+KAFEP+LLLGR +F GVDMRIRVKGGG+TSQIYAIRQSIAKALVA++QKYVDEQSKKEIKD+L+RYDRTLLVADPRRCEPKKFGGRGAR+RFQKSYR
Sbjct:    5 ESVQCFGRKKTAVAVTYCRRGRGLIRLT-VPIELVEPEILRYKAFEPVLLLGRSKFAGVDMRIRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEIKDVLLRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 142          
BLAST of CX671682 vs. ExPASy Swiss-Prot
Match: RS16_ORYSJ (40S ribosomal protein S16 OS=Oryza sativa subsp. japonica GN=RPS16A PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.455e-63
Identity = 118/146 (80.82%), Postives = 128/146 (87.67%), Query Frame = 1
Query:   55 ATAAPKTESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 492
            A   P   +VQCFGRKKTAVAV+YCK GRGLIK+NG PIEL+ PE+LR KAFEPILL GR RF  +DMRIRV+GGG TSQIYAIRQ+IAKALVA+YQKYVDE SKKE+KDI  RYDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct:    4 ALTRPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149          
BLAST of CX671682 vs. ExPASy Swiss-Prot
Match: RS16_ORYSI (40S ribosomal protein S16 OS=Oryza sativa subsp. indica GN=RPS16A PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.455e-63
Identity = 118/146 (80.82%), Postives = 128/146 (87.67%), Query Frame = 1
Query:   55 ATAAPKTESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 492
            A   P   +VQCFGRKKTAVAV+YCK GRGLIK+NG PIEL+ PE+LR KAFEPILL GR RF  +DMRIRV+GGG TSQIYAIRQ+IAKALVA+YQKYVDE SKKE+KDI  RYDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct:    4 ALTRPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149          
BLAST of CX671682 vs. ExPASy Swiss-Prot
Match: RS16_RAT (40S ribosomal protein S16 OS=Rattus norvegicus GN=Rps16 PE=1 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 2.403e-58
Identity = 106/139 (76.26%), Postives = 124/139 (89.21%), Query Frame = 1
Query:   76 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 492
            +SVQ FGRKKTA AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RF GVD+R+RVKGGGH +QIYAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR
Sbjct:    8 QSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146          
BLAST of CX671682 vs. ExPASy Swiss-Prot
Match: RS16_PIG (40S ribosomal protein S16 OS=Sus scrofa GN=RPS16 PE=2 SV=4)

HSP 1 Score: 225.328 bits (573), Expect = 2.403e-58
Identity = 106/139 (76.26%), Postives = 124/139 (89.21%), Query Frame = 1
Query:   76 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 492
            +SVQ FGRKKTA AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RF GVD+R+RVKGGGH +QIYAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR
Sbjct:    8 QSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146          
The following BLAST results are available for this feature:
BLAST of CX671682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RS16_GOSHI1.895e-7196.4040S ribosomal protein S16 OS=Gossypium hirsutum GN... [more]
RS16_FRIAG2.096e-7089.5840S ribosomal protein S16 OS=Fritillaria agrestis ... [more]
RS161_ARATH4.669e-7088.4440S ribosomal protein S16-1 OS=Arabidopsis thalian... [more]
RS163_ARATH6.098e-7087.7640S ribosomal protein S16-3 OS=Arabidopsis thalian... [more]
RS162_ARATH2.651e-6583.6740S ribosomal protein S16-2 OS=Arabidopsis thalian... [more]
RS16_TORRU3.462e-6587.7740S ribosomal protein S16 OS=Tortula ruralis GN=RP... [more]
RS16_ORYSJ1.455e-6380.8240S ribosomal protein S16 OS=Oryza sativa subsp. j... [more]
RS16_ORYSI1.455e-6380.8240S ribosomal protein S16 OS=Oryza sativa subsp. i... [more]
RS16_RAT2.403e-5876.2640S ribosomal protein S16 OS=Rattus norvegicus GN=... [more]
RS16_PIG2.403e-5876.2640S ribosomal protein S16 OS=Sus scrofa GN=RPS16 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12E05_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12E05-J10-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671682 ID=CX671682; Name=CX671682; organism=Citrus sinensis; type=EST; length=698bp
AAGCACCAAGGGCTCACACAACACAAACACACACTAAGCACTGATCCCAA
CATGGCTACTGCTGCTCCTAAAACCGAGTCCGTGCAATGCTTCGGCCGCA
AGAAGACGGCGGTGGCAGTAACCTACTGCAAGCGCGGCCGCGGCTTGATC
AAGATCAACGGCTGCCCAATCGAGCTTGTGGAGCCAGAGATCCTGCGTTT
CAAGGCCTTCGAGCCGATCCTATTGCTCGGACGACACCGTTTCAACGGAG
TAGACATGAGGATCCGCGTCAAGGGCGGAGGCCACACATCTCAGATCTAC
GCTATACGCCAGAGCATCGCCAAGGCCTTGGTCGCGTTTTATCAGAAGTA
CGTGGACGAACAGAGCAAGAAGGAGATAAAAGACATTCTGGTTAGGTACG
ATAGGACTTTGCTTGTGGCTGATCCTAGACGCTGTGAGCCTAAGAAGTTC
GGAGGACGCGGCGCCAGGGCTAGGTTCCAGAAATCTTACCGTTGAAGAAA
CAGAGGTTTATGTTGCGTTTTTATTATTGTTATTAATTTTGGGTTTTATT
GAAGGATTAATTAATATGTTTTTGAGGCCACATAGATTTTGAATGGTTAT
TGTTATTGTTAAGGGTATTGTGGTTTTCAGATTATCATATGGATTTTATA
TTTGCTTTTGAATGAAGAAGTGATTTCTGTTTAAAAAAAAAAAAAAAA
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