CX671666

Overview
NameCX671666
Unique NameCX671666
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671666_ssr320 microsatellite CX671666_ssr320:320..340. BLAST: Citrus ESTs to Prunus persica proteins V1
CX671666_ssr348 microsatellite CX671666_ssr348:348..362. BLAST: Citrus ESTs to Prunus persica proteins V1
CX671666_ssr363 microsatellite CX671666_ssr363:363..374. BLAST: Citrus ESTs to Prunus persica proteins V1
CX671666_ssr173 microsatellite CX671666_ssr173:173..187. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5081 contig Csv1_Contig5081:1..779. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671666 vs. ExPASy Swiss-Prot
Match: VPS41_ARATH (Vacuolar protein sorting-associated protein 41 homolog OS=Arabidopsis thaliana GN=VPS41 PE=2 SV=3)

HSP 1 Score: 237.269 bits (604), Expect = 7.334e-62
Identity = 113/134 (84.33%), Postives = 125/134 (93.28%), Query Frame = 3
Query:  381 PRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT-DEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW 779
            PRLKYQRMGG++P+LL+NDAASC+AVA RMIALGTH GTV ILD LGNQVKEF AHTA VND++FD +GEY+GSCSDDGSVVINSLFT DEKMKFDYHRPMKAISLDPDYT+K S+RFVAGGLAGHLY+NSKKW
Sbjct:   42 PRLKYQRMGGNVPALLSNDAASCIAVAARMIALGTHDGTVRILDLLGNQVKEFRAHTAPVNDINFDTEGEYIGSCSDDGSVVINSLFTDDEKMKFDYHRPMKAISLDPDYTKKQSKRFVAGGLAGHLYMNSKKW 175          
BLAST of CX671666 vs. ExPASy Swiss-Prot
Match: VPS41_SOLLC (Vacuolar protein sorting-associated protein 41 homolog OS=Solanum lycopersicum GN=VPS41 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.251e-61
Identity = 119/169 (70.41%), Postives = 129/169 (76.33%), Query Frame = 3
Query:  273 MAPFPAENGVXXXXXXXXXXXXXXXXXXXXXXXXXXPRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW 779
            M+P P+ENG+                          PRLKYQRMG S+PSLL+ DAA+C+AVAERMIALGTH G VHILDFLGNQVKEF AHTAAVNDL FD DGEYVGSCSDDGSVVINSLFTDE+MKF+YHRPMKAI+LDPDY R  SRRFV GGLAG LYLN KKW
Sbjct:    1 MSPKPSENGIDGDDERDEEEEDSEEEEAEEEEEDE-PRLKYQRMGASVPSLLSADAATCIAVAERMIALGTHGGAVHILDFLGNQVKEFAAHTAAVNDLCFDTDGEYVGSCSDDGSVVINSLFTDERMKFEYHRPMKAIALDPDYARTSSRRFVTGGLAGQLYLNVKKW 168          
BLAST of CX671666 vs. ExPASy Swiss-Prot
Match: VPS41_HUMAN (Vacuolar protein sorting-associated protein 41 homolog OS=Homo sapiens GN=VPS41 PE=2 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 4.350e-22
Identity = 49/133 (36.84%), Postives = 79/133 (59.40%), Query Frame = 3
Query:  381 PRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW 779
            P+LKY+R+   +  +L  DAASC+ V ++ +ALGTH G V++LD  GN  ++F      +N +S D  GE++G CS+DG V +  L++ E+    +  P+K I++ P + R   ++FV GG    L L  + W
Sbjct:   28 PKLKYERLSNGVTEILQKDAASCMTVHDKFLALGTHYGKVYLLDVQGNITQKFDVSPVKINQISLDESGEHMGVCSEDGKVQVFGLYSGEEFHETFDCPIKIIAVHPHFVRSSCKQFVTGG--KKLLLFERSW 158          
BLAST of CX671666 vs. ExPASy Swiss-Prot
Match: VPS41_MOUSE (Vacuolar protein sorting-associated protein 41 homolog OS=Mus musculus GN=Vps41 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.266e-21
Identity = 45/121 (37.19%), Postives = 75/121 (61.98%), Query Frame = 3
Query:  381 PRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGG 743
            P+LKY+R+   +  +L  DAASC+ V ++ +ALGTH G V++LD  GN  ++F      +N +S D  GE++G CS+DG + +  L++ E+    +  P+K I++ P + R   ++FV GG
Sbjct:   27 PKLKYERLSNGVTEILQKDAASCMTVHDKFLALGTHYGKVYLLDVQGNITQKFDVSPVKINQISLDDSGEHMGVCSEDGKLQVFGLYSGEEFHETFDCPIKIIAVHPQFVRSSCKQFVTGG 147          
BLAST of CX671666 vs. ExPASy Swiss-Prot
Match: VPS41_SCHPO (Vacuolar protein sorting-associated protein 41 OS=Schizosaccharomyces pombe GN=vps41 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.678e-19
Identity = 44/133 (33.08%), Postives = 79/133 (59.40%), Query Frame = 3
Query:  381 PRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW 779
            P+L Y+R+         ND  S  A+++     G+H G ++I    G  +++   H+A+V DLS D++ E + SCS DG ++I+++ T E    D+ RP+ ++++DP Y+ + SR+ ++GG AG + L+ K W
Sbjct:   24 PKLIYERITEKFQGCFMNDTISACAISKEHFFFGSHNGAIYIYQKNGILLRKMILHSASVVDLSVDLESENLASCSMDGKMIISNITTRETTVHDFKRPLLSVAIDPYYSTRSSRQVLSGGRAGKVVLSEKGW 156          
BLAST of CX671666 vs. ExPASy Swiss-Prot
Match: VPS41_YEAST (Vacuolar protein sorting-associated protein 41 OS=Saccharomyces cerevisiae GN=VPS41 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.295e-13
Identity = 39/134 (29.10%), Postives = 73/134 (54.48%), Query Frame = 3
Query:  381 PRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW 779
            P LKY R+     +    D+ S     +   A GTH+G +H+       +K    H +++  L  + DG+Y  + S DG+V+I S+   + + ++D+ RP+ +++L  ++  + SR FV+GG+AG + L+ + W
Sbjct:   99 PLLKYTRISQLPKNFFQRDSISSCLFGDTFFAFGTHSGILHLTTCAFEPIKTIKCHRSSI--LCINTDGKYFATGSIDGTVIIGSMDDPQNITQYDFKRPINSVALHSNF--QASRMFVSGGMAGDVVLSQRNW 228          
The following BLAST results are available for this feature:
BLAST of CX671666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
VPS41_ARATH7.334e-6284.33Vacuolar protein sorting-associated protein 41 hom... [more]
VPS41_SOLLC1.251e-6170.41Vacuolar protein sorting-associated protein 41 hom... [more]
VPS41_HUMAN4.350e-2236.84Vacuolar protein sorting-associated protein 41 hom... [more]
VPS41_MOUSE1.266e-2137.19Vacuolar protein sorting-associated protein 41 hom... [more]
VPS41_SCHPO7.678e-1933.08Vacuolar protein sorting-associated protein 41 OS=... [more]
VPS41_YEAST6.295e-1329.10Vacuolar protein sorting-associated protein 41 OS=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_12D09_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12D09-H18-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671666 ID=CX671666; Name=CX671666; organism=Citrus sinensis; type=EST; length=779bp
CCCAAACTGAAGGAAGAGAGAAACGAAAGATGCTGAAGAAGAAACAGAAC
ACCTGTACAAGTGGCAACCATCAAACGTAATCAGTCTTTGTTGTCCAGCA
AATTAATAACTTTAAACGGCCGTTAAACTCAATTTAATTATAAAAAAAGG
GCAAATTAATAAATTAACCGATCTTCCCTTCCCTTCCCTTCTTTCTCAAT
CATTCTATTATTATTTATTATATTTCATTTTTCGCTCCGAACCGCACCAA
CCTGACGAAAGTCACCGTACAAATGGCTCCGTTTCCGGCGGAAAACGGCG
TCGAAGGCGACGACGAGAGAGAAGAAGAAGAAGAAGAAGACGAAGACGAA
GAAGAAGAAGAAGAGGAGGAGGAGGAAGAGCCAAGGCTCAAGTATCAAAG
AATGGGAGGCAGCTTACCTTCTCTTTTGGCAAACGACGCCGCTTCGTGCG
TTGCTGTAGCTGAACGGATGATCGCTCTCGGTACTCACGCCGGCACAGTT
CATATTCTTGATTTTTTGGGGAATCAGGTTAAGGAGTTTCCTGCTCATAC
TGCTGCTGTCAACGACCTTAGCTTTGATGTAGATGGCGAATATGTAGGAA
GTTGTTCGGATGATGGTTCTGTTGTGATAAATAGCCTTTTCACTGATGAA
AAAATGAAGTTCGATTATCATCGCCCAATGAAGGCCATTTCACTGGACCC
AGATTATACCAGGAAAATGTCTAGAAGATTTGTTGCTGGAGGCTTAGCAG
GTCATTTATATTTAAATTCAAAAAAATGG
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