CX671656

Overview
NameCX671656
Unique NameCX671656
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX671656 vs. ExPASy Swiss-Prot
Match: SYP81_ARATH (Syntaxin-81 OS=Arabidopsis thaliana GN=SYP81 PE=2 SV=2)

HSP 1 Score: 273.478 bits (698), Expect = 1.045e-72
Identity = 138/186 (74.19%), Postives = 159/186 (85.48%), Query Frame = 1 
Query:  265 MARIRDRTEDFKDVARHTAVSLGYDESKLAAIMASFIIHKPRERSSFTKAALKTLESIGALEQFILNHRKDYVEMQRTTEQERDSIEHEVTAFIKTCKEQIDILQNSINDDEANSKGWLGLKGDNSNADTIAHKHGVVLILSEKLHSVTAQFDQMRAIRFQDAINRAMPRRKLKRETVSKSADIST 822
            M+R RDRTEDFKD  R++AVS+GY+ESK+A+ MASFIIHKP+ERS FTKAA KTL+SI  LE F+L HRKDYV++ RTTEQE+DSIE EV AFIK CKEQIDIL NSI ++EANSKGWLGL  DN NAD+IAHKHGVVLILSEKLHSVTAQFDQ+RA RFQD INRAMPRRK KR  + ++  I+T
Sbjct:    1 MSRFRDRTEDFKDSVRNSAVSIGYNESKVASTMASFIIHKPKERSPFTKAAFKTLDSIKELELFMLKHRKDYVDLHRTTEQEKDSIEQEVAAFIKACKEQIDILINSIRNEEANSKGWLGLPADNFNADSIAHKHGVVLILSEKLHSVTAQFDQLRATRFQDIINRAMPRRKPKR-VIKEATPINT 185
The following BLAST results are available for this feature:
BLAST of CX671656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SYP81_ARATH1.045e-7274.19Syntaxin-81 OS=Arabidopsis thaliana GN=SYP81 PE=2 ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_12D04_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12D04-H8-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671656 ID=CX671656; Name=CX671656; organism=Citrus sinensis; type=EST; length=834bp
CCAATTTCTCTTACCTTCGCGGACACAGTTGAATCTTTCTAGCTCCCATG
GCGGAGTTTCAGAATTCTTTTATTTGAGATTGATCAAAACTGAAGAACAA
TCCTTTGCAAAGACTGAGATCTGCTTGAGTTTCAACAAATTACGAAGAAT
CCATTCTCAGCTTGTTTGGTAACCATATATTCTGGCAATGCAGATGAGTT
TGCACTCGCATAAGCTTTCCAAATATCATTTCTATAACACGGGTATTGCT
TGTGATGATAAATTATGGCGAGAATTAGGGATAGAACTGAGGATTTTAAA
GATGTCGCGAGGCATACTGCTGTTTCTCTAGGTTATGATGAGTCCAAACT
GGCAGCCATAATGGCTTCTTTCATAATTCATAAACCACGGGAAAGATCAT
CTTTTACCAAAGCTGCTCTCAAAACGCTTGAAAGCATTGGAGCTTTGGAA
CAGTTTATTTTGAATCATAGGAAAGATTATGTTGAGATGCAGCGTACAAC
TGAACAAGAAAGAGATAGCATTGAGCATGAAGTTACGGCTTTTATTAAAA
CTTGCAAAGAACAAATTGATATTCTCCAAAATAGCATAAATGATGATGAA
GCAAATTCAAAGGGCTGGCTGGGCCTTAAAGGTGATAACTCCAACGCTGA
TACAATAGCTCACAAACATGGGGTGGTTCTAATTTTAAGTGAGAAACTGC
ATTCAGTTACGGCACAGTTTGATCAGATGAGAGCCATCCGTTTCCAAGAT
GCTATTAACAGAGCAATGCCAAGAAGAAAACTCAAGCGAGAGACTGTTTC
AAAATCTGCAGATATTTCCACACCAAACAAGTCT
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