CX671648

Overview
NameCX671648
Unique NameCX671648
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX671648 vs. ExPASy Swiss-Prot
Match: TCP4_ARATH (Transcription factor TCP4 OS=Arabidopsis thaliana GN=TCP4 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.168e-22
Identity = 66/157 (42.04%), Postives = 82/157 (52.23%), Query Frame = -2 
Query:  321 SAWSE-SAEMSRFQRMVAWXXXXXXXXXXXXXXXXXGFVFNSQQPPPVQPLFGQNQLFHSQRGPLQSSNTPSVRAWIDQPIGLTNDXXXXXXXXXXXXXXXXQPAVHQSVISGIGFASPVGEFS-GFRIPARIQGEDEEHDHGIHNRPSSTSSDSRH 785
            S+W + S+E  R QR+VAW                  F   +      QP+ GQ+Q  +SQRGPLQSS +P +RAW D      +                  P VHQS I GIGFAS  GEFS GFRIPAR QG++EE   G+ ++PSS SS SRH
Sbjct:  271 SSWEQQSSEFGRIQRLVAWNSGGGGGATDTGNGGGFLFAPPTPSTTSFQPVLGQSQQLYSQRGPLQSSYSPMIRAWFDP-----HHHHQSISTDDLNHHHHLPPPVHQSAIPGIGFAS--GEFSSGFRIPARFQGQEEEQHDGLTHKPSSASSISRH 420
[Close]
BLAST of CX671648 vs. ExPASy Swiss-Prot
Match: TCP3_ARATH (Transcription factor TCP3 OS=Arabidopsis thaliana GN=TCP3 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.892e-22
Identity = 71/159 (44.65%), Postives = 83/159 (52.20%), Query Frame = -2 
Query:  321 ESAEMSRFQRMVAWXXXXXXXXXXXXXXXXXGFVFNSQQPPPVQPLFGQNQLFHSQRGPLQSSNTPSVRAWID--------QPIGLTNDXXXXXXXXXXXXXXXXQPAVHQSVISGIGFASPVGEFSGFRIPARIQGEDEEHDHGIHNRPSSTSSDSRH 773
            +S E  + QR+V+W                  FVF S  P  + P++ Q+QL  SQRGPLQS NTP +RAW D        Q    T+D                 P +HQS I GI FAS  GEFSGFRIPAR QGE EE  HG  N+PSS SSDSRH
Sbjct:  250 QSPEFGKIQRLVSWNNVGAAESAGSTGG----FVFAS--PSSLHPVYSQSQLL-SQRGPLQSINTPMIRAWFDPHHHHHHHQQSMTTDDLHHHHPYHIP-------PGIHQSAIPGIAFASS-GEFSGFRIPARFQGEQEE--HGGDNKPSSASSDSRH 391
The following BLAST results are available for this feature:
BLAST of CX671648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TCP4_ARATH1.168e-2242.04Transcription factor TCP4 OS=Arabidopsis thaliana ... [more]
TCP3_ARATH9.892e-2244.65Transcription factor TCP3 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_12C11_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12C11-F22-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671648 ID=CX671648; Name=CX671648; organism=Citrus sinensis; type=EST; length=789bp
GACAAACATCAATGATATTCCAAAGTCTGTTAACTTGAACACATAACAAA
ACCAACAGAAAATAAACAAAGTTGAGCTTCAAGAGCTCACTTCAAATCAT
GATGCAAACATAAACTTGATAGAAGTTAAAACAAACCAAGGATTGAAAAA
CTTGAAATCCATCCAGAATTTTTCTTCTTCCCACGGTTTTAGGCCATTGA
ATTTAAAATGCTCCAAATCTCCTCTCTTCACTTGCTCTTGATTGAGTTCC
ATCAAATCAGCTCCCATGTGACACAAAACAATCAACAAGTCCTGTTAGAG
AGGAAAACGATCTGATTTCAATGGCGAGAATCAGAGGAAGTAGAGGATGG
CCTATTGTGAATGCCATGGTCATGTTCCTCATCTTCGCCTTGGATTCGTG
CTGGAATGCGAAATCCAGAGAATTCACCAACAGGAGAGGCGAATCCAATG
CCGGATATCACAGATTGATGGACTGCTGGCTGTTGTAGAATTTGATGATG
GTGAAGGTGATGATGATGCTGTTGTCGATGGTCATTGGTAAGACCAATTG
GTTGGTCTATCCAAGCACGAACCGAAGGCGTGTTACTGGACTGAAGGGGT
CCCCTCTGTGAATGAAACAACTGGTTTTGGCCGAACAACGGCTGCACTGG
CGGCGGCTGCTGCGAATTAAACACAAATCCACCACCACTTGCATTACCAG
CTGAATCATCTGCAGCACCACCACCGCTATTCCAAGCCACCATTCTCTGG
AATCTTGACATTTCTGCTGACTCAGACCAAGCTGAAGCA
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