CX671640

Overview
NameCX671640
Unique NameCX671640
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12210 contig Csv1_Contig12210:24..866. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671640 vs. ExPASy Swiss-Prot
Match: ETFD_PONAB (Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Pongo abelii GN=ETFDH PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 4.427e-71
Identity = 134/236 (56.78%), Postives = 164/236 (69.49%), Query Frame = -1
Query:  169 GAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHED--------LNMEIYWDTLRNSWVWQELQRARNYRPAFE--YGLLPGLAICGLEHYILRGKSPYTLKHGKPDYEATDAARLHSPIEYPKPDGVLSFDVPTSLHRSNTNHEHDQPAHLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQ-LKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 843
            G +IGC+ GF+NVPKIKGTHTAMKSG+LAAE+ F  L  +        L++  Y D L+NSWVW+EL   RN RP+     G+  G+   G+ ++ILRG  P+TLKH   D+E    A+  +PIEYPKPDG +SFD+ +S+  S TNHEHDQPAHL LRD  IP   NL  Y GPE R+CPA VYE+VP E+    +LQINAQNC+HCK CDIKDP QNI W VPEGGGGP Y+ M
Sbjct:  382 GLLIGCSPGFMNVPKIKGTHTAMKSGILAAESIFNQLTSENLQSKTMGLHVTEYEDNLKNSWVWKELYSVRNIRPSCHGVLGVYGGMIYTGIFYWILRGMEPWTLKHKGSDFERLKPAKDCTPIEYPKPDGQISFDLLSSVALSGTNHEHDQPAHLTLRDDSIPVNRNLSIYDGPEQRFCPAGVYEFVPVEQGDGFRLQINAQNCVHCKTCDIKDPSQNINWVVPEGGGGPAYNGM 617          
BLAST of CX671640 vs. ExPASy Swiss-Prot
Match: ETFD_HUMAN (Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Homo sapiens GN=ETFDH PE=1 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 4.427e-71
Identity = 134/236 (56.78%), Postives = 164/236 (69.49%), Query Frame = -1
Query:  169 GAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHED--------LNMEIYWDTLRNSWVWQELQRARNYRPAFE--YGLLPGLAICGLEHYILRGKSPYTLKHGKPDYEATDAARLHSPIEYPKPDGVLSFDVPTSLHRSNTNHEHDQPAHLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQ-LKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 843
            G +IGC+ GF+NVPKIKGTHTAMKSG+LAAE+ F  L  +        L++  Y D L+NSWVW+EL   RN RP+     G+  G+   G+ ++ILRG  P+TLKH   D+E    A+  +PIEYPKPDG +SFD+ +S+  S TNHEHDQPAHL LRD  IP   NL  Y GPE R+CPA VYE+VP E+    +LQINAQNC+HCK CDIKDP QNI W VPEGGGGP Y+ M
Sbjct:  382 GLLIGCSPGFMNVPKIKGTHTAMKSGILAAESIFNQLTSENLQSKTIGLHVTEYEDNLKNSWVWKELYSVRNIRPSCHGVLGVYGGMIYTGIFYWILRGMEPWTLKHKGSDFERLKPAKDCTPIEYPKPDGQISFDLLSSVALSGTNHEHDQPAHLTLRDDSIPVNRNLSIYDGPEQRFCPAGVYEFVPVEQGDGFRLQINAQNCVHCKTCDIKDPSQNINWVVPEGGGGPAYNGM 617          
BLAST of CX671640 vs. ExPASy Swiss-Prot
Match: ETFD_RAT (Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Rattus norvegicus GN=Etfdh PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.429e-69
Identity = 133/236 (56.36%), Postives = 161/236 (68.22%), Query Frame = -1
Query:  169 GAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHED--------LNMEIYWDTLRNSWVWQELQRARNYRPAFE--YGLLPGLAICGLEHYILRGKSPYTLKHGKPDYEATDAARLHSPIEYPKPDGVLSFDVPTSLHRSNTNHEHDQPAHLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQ-LKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 843
            G +IGC+ GF+NVPKIKGTHTAMKSG LAAEA F  L  +        L++  Y D L+ SWVW+EL   RN RP+     G+  G+   G+ ++ILRG  P+TLKH   D E    A+  +PIEYPKPDG +SFD+ +S+  S TNHEHDQPAHL L+D  IP   NL  Y GPE R+CPA VYE+VP E+    +LQINAQNC+HCK CDIKDP QNI W VPEGGGGP Y+ M
Sbjct:  381 GLLIGCSPGFMNVPKIKGTHTAMKSGSLAAEAIFKQLTSENLQSKTAGLHVTEYEDNLKQSWVWKELHAVRNIRPSCHGILGVYGGMIYTGIFYWILRGMEPWTLKHKGSDSEQLKPAKDCTPIEYPKPDGQISFDLLSSVALSGTNHEHDQPAHLTLKDDSIPVNRNLSIYDGPEQRFCPAGVYEFVPLEQGDGFRLQINAQNCVHCKTCDIKDPSQNINWVVPEGGGGPAYNGM 616          
BLAST of CX671640 vs. ExPASy Swiss-Prot
Match: ETFD_PIG (Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial (Fragment) OS=Sus scrofa GN=ETFDH PE=1 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 7.067e-69
Identity = 130/236 (55.08%), Postives = 161/236 (68.22%), Query Frame = -1
Query:  169 GAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHED--------LNMEIYWDTLRNSWVWQELQRARNYRPAFE--YGLLPGLAICGLEHYILRGKSPYTLKHGKPDYEATDAARLHSPIEYPKPDGVLSFDVPTSLHRSNTNHEHDQPAHLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQ-LKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 843
            G +IGC+ GF+NVPKIKGTHTAMKSG LAAE+ F  L  +        L++  Y D L+NSWVW+EL   RN RP+     G+  G+   G+ ++I RG  P+TLKH   D +    A+  +PIEYPKPDG +SFD+ +S+  S TNHEHDQPAHL L+D  +P   NL  Y GPE R+CPA VYE+VP E+    +LQINAQNC+HCK CDIKDP QNI W VPEGGGGP Y+ M
Sbjct:  372 GLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLTSENLQSKTIGLHVTEYEDNLKNSWVWKELYSVRNIRPSCHGILGVYGGMIYTGIFYWIFRGMEPWTLKHKGSDSDQLKPAKDCTPIEYPKPDGQISFDLLSSVALSGTNHEHDQPAHLTLKDDSVPVNRNLSIYDGPEQRFCPAGVYEFVPLEQGDGFRLQINAQNCVHCKTCDIKDPSQNINWVVPEGGGGPAYNGM 607          
BLAST of CX671640 vs. ExPASy Swiss-Prot
Match: ETFD_MOUSE (Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Mus musculus GN=Etfdh PE=1 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 1.206e-68
Identity = 131/236 (55.51%), Postives = 161/236 (68.22%), Query Frame = -1
Query:  169 GAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHED--------LNMEIYWDTLRNSWVWQELQRARNYRPAFE--YGLLPGLAICGLEHYILRGKSPYTLKHGKPDYEATDAARLHSPIEYPKPDGVLSFDVPTSLHRSNTNHEHDQPAHLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQ-LKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 843
            G +IGC+ GF+NVPKIKGTHTAMKSG LAAE+ F  L  +        L++  Y D L+ SWVW+EL   RN RP+     G+  G+   G+ ++ILRG  P+TLKH   D +    A+  +PIEYPKPDG +SFD+ +S+  S TNHEHDQPAHL L+D  IP   NL  Y GPE R+CPA VYE+VP E+    +LQINAQNC+HCK CDIKDP QNI W VPEGGGGP Y+ M
Sbjct:  381 GLLIGCSPGFMNVPKIKGTHTAMKSGSLAAESIFKQLTSENLQSKTTGLHVTEYEDNLKQSWVWKELHAVRNIRPSCHGILGVYGGMIYTGIFYWILRGMEPWTLKHKGSDSDQLKPAKDCTPIEYPKPDGQISFDLLSSVALSGTNHEHDQPAHLTLKDDSIPVNRNLSIYDGPEQRFCPAGVYEFVPLEQGDGFRLQINAQNCVHCKTCDIKDPSQNINWVVPEGGGGPAYNGM 616          
BLAST of CX671640 vs. ExPASy Swiss-Prot
Match: ETFD_BOVIN (Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Bos taurus GN=ETFDH PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.574e-68
Identity = 129/236 (54.66%), Postives = 161/236 (68.22%), Query Frame = -1
Query:  169 GAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHED--------LNMEIYWDTLRNSWVWQELQRARNYRPAFE--YGLLPGLAICGLEHYILRGKSPYTLKHGKPDYEATDAARLHSPIEYPKPDGVLSFDVPTSLHRSNTNHEHDQPAHLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQ-LKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 843
            G +IGC+ GF+NVPKIKGTHTAMKSG+LAAE+ F  L  +        L++  Y D L+ SWVW+EL   RN RP+     G+  G+   G+ ++I RG  P+TLKH   D +    A+  +PIEYPKPDG +SFD+ +S+  S TNHEHDQPAHL L+D  +P   NL  Y GPE R+CPA VYE+VP E+    +LQINAQNC+HCK CDIKDP QNI W VPEGGGGP Y+ M
Sbjct:  382 GLLIGCSPGFMNVPKIKGTHTAMKSGILAAESIFNQLTNENLQSKTIGLDVTEYEDNLKKSWVWKELYAVRNIRPSCHSILGVYGGMIYTGIFYWIFRGMEPWTLKHKGSDSDKLKPAKDCTPIEYPKPDGQISFDLLSSVALSGTNHEHDQPAHLTLKDDSVPVNRNLSIYDGPEQRFCPAGVYEFVPVEQGDGFRLQINAQNCVHCKTCDIKDPSQNINWVVPEGGGGPAYNGM 617          
BLAST of CX671640 vs. ExPASy Swiss-Prot
Match: ETFD_DICDI (Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Dictyostelium discoideum GN=etfdh PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.514e-66
Identity = 124/241 (51.45%), Postives = 160/241 (66.39%), Query Frame = -1
Query:  169 GAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH----------------EDLNMEIYWDTLRNSWVWQELQRARNYRPAFEYGLLPGLAICGLEHYILRGKSPYTLKHGKPDYEATDAARLHSPIEYPKPDGVLSFDVPTSLHRSNTNHEHDQPAHLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 843
            GA++GC AGF++VPK+KG+H AMK+G+LAAEA F  L                 E L +  Y + L+ SWVW+EL+  RNYRP+  +G +PGL    LE YI RG +P+TL +GKPD E    A     IEY KPDG ++FD+ TS+ RS TNHE +QP HL++RD ++ + VN   Y GPE R+CPA VYE+V  EK + +L  N+  CLHCK CDIKDP QNI++TVPEGGGGP Y  M
Sbjct:  366 GALVGCTAGFVHVPKVKGSHYAMKTGILAAEAAFPQLISQQEKEQEQEQDKPSVEPLLINEYPEELKKSWVWKELREVRNYRPSLHWGTIPGLIYGALEMYIFRGHTPWTLSNGKPDNERLKPAAECKKIEYKKPDGQITFDLMTSVMRSGTNHEENQPIHLKVRDMEVAKKVNRDIYDGPEGRFCPAGVYEWVEGEKGEKELVRNSVFCLHCKTCDIKDPTQNIDFTVPEGGGGPKYGAM 606          
BLAST of CX671640 vs. ExPASy Swiss-Prot
Match: ETFD_CAEEL (Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Caenorhabditis elegans GN=let-721 PE=2 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 1.093e-61
Identity = 119/235 (50.64%), Postives = 157/235 (66.81%), Query Frame = -1
Query:  169 GAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHED------LNMEIYWDTLRNSWVWQELQRARNYRPAFE--YGLLPGLAICGLEHYILRGKSPYTLKHGKPDYEATDAARLHSPIEYPKPDGVLSFDVPTSLHRSNTNHEHDQPAHLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLK--LQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 843
            G ++GC+AGFLNV K+KGTH AMKSGM+AAE+ F  + +       ++   Y   +R+++V +EL+  RN RP+F    G + GL   G+ +   RG  P+TL HGK D E     +    I+YPKPDG L+FD+ TS+  + TNH  DQPAHL L++ ++P  VNL  Y GPE+R+CPA VYE+VP E ++ K  LQINAQNC+HCK CDIKDP+QNI W  PEGGGGP Y  M
Sbjct:  363 GCLVGCSAGFLNVAKLKGTHNAMKSGMVAAESIFEDIQQKGEDVQTIDPATYDKNIRDTYVVKELKATRNIRPSFNTSLGYIGGLIYSGIFYVFGRGIEPWTLGHGKKDNEKLIPVKDAKEIDYPKPDGKLTFDLLTSVSLTGTNHTEDQPAHLTLKNDQVPLDVNLAVYGGPEARFCPAGVYEFVPSEADESKKRLQINAQNCIHCKTCDIKDPQQNINWVTPEGGGGPKYEGM 597          
BLAST of CX671640 vs. ExPASy Swiss-Prot
Match: ETFD_SCHPO (Probable electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Schizosaccharomyces pombe GN=SPAC20G8.04c PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.250e-57
Identity = 115/233 (49.36%), Postives = 154/233 (66.09%), Query Frame = -1
Query:  172 GAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEA-----GFGVLHEDLNMEIYWDTLRNSWVWQELQRARNYRPAFE--YGLLPGLAICGLEHYILRGKSPYTLKHGKPDYEATDAARLHSPIEYPKPDGVLSFDVPTSLHRSNTNHEHDQPAHLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQL--KLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSV 843
            GA+IGC+AGF+NV KIKGTHTAMKSG++AA+A     G     + L +  Y + L+N++V++EL   RN RP+F    G   G+A   +E Y+L+G+ P+TLKH   D +AT +A  + PI YPKPD VLSFD+PTS+ RS T H  +QP HL    PK  +      Y G E+++CPA VYEYV DE +    +  IN+QNC+HCK CDIKDP Q I+W  P+GG GP Y++
Sbjct:  400 GALIGCSAGFVNVAKIKGTHTAMKSGIVAADAIVDAFGRDAASKPLLLNDYEENLKNTYVFKELYSVRNIRPSFHSFLGNYGGMAYSAVEAYVLKGRVPWTLKHKGGDAKATKSASKYKPINYPKPDNVLSFDIPTSVSRSATMHAENQPCHLFDHRPKDRKSC-FETYKGVENKFCPAGVYEYVNDEASSYGKRFVINSQNCVHCKTCDIKDPLQGIQWKTPQGGDGPKYTL 631          
BLAST of CX671640 vs. ExPASy Swiss-Prot
Match: ETFD_PSEAE (Electron transfer flavoprotein-ubiquinone oxidoreductase OS=Pseudomonas aeruginosa GN=PA2953 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.786e-57
Identity = 118/230 (51.30%), Postives = 140/230 (60.87%), Query Frame = -1
Query:  169 GAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDLN----MEIYWDTLRNSWVWQELQRARNYRPAF-EYGLLPGLAICGLEHYILRGKSPYTLKHGKPDYEATDAARLHSPIEYPKPDGVLSFDVPTSLHRSNTNHEHDQPAHLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 843
            GA+IGC  G LN  KIKG+HTAMKSGMLAA+A    L         +  Y D  + SW++ EL R+RN+  A  ++G + G A   ++  I  GK P TL   KPDY     A     I+YPKPDG LSFD  +S+  SNTNHE DQP HL+L D  IP   NLP Y  P  RYCPA VYE V ++    + QINAQNC+HCK CDIKDP QNI W  PEG GGP Y  M
Sbjct:  322 GALIGCDLGTLNFAKIKGSHTAMKSGMLAADAIAEALAAGREGGDELSSYVDAFKASWLYDELFRSRNFGAAIHKFGAIGGGAFNFIDQNIFGGKIPVTLHDDKPDYACLKKASEAPKIDYPKPDGKLSFDKLSSVFLSNTNHEEDQPIHLKLADASIPIEKNLPLYDEPAQRYCPAGVYEVVANDDGSKRFQINAQNCVHCKTCDIKDPAQNITWVAPEGTGGPNYPNM 551          
The following BLAST results are available for this feature:
BLAST of CX671640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ETFD_PONAB4.427e-7156.78Electron transfer flavoprotein-ubiquinone oxidored... [more]
ETFD_HUMAN4.427e-7156.78Electron transfer flavoprotein-ubiquinone oxidored... [more]
ETFD_RAT2.429e-6956.36Electron transfer flavoprotein-ubiquinone oxidored... [more]
ETFD_PIG7.067e-6955.08Electron transfer flavoprotein-ubiquinone oxidored... [more]
ETFD_MOUSE1.206e-6855.51Electron transfer flavoprotein-ubiquinone oxidored... [more]
ETFD_BOVIN1.574e-6854.66Electron transfer flavoprotein-ubiquinone oxidored... [more]
ETFD_DICDI2.514e-6651.45Electron transfer flavoprotein-ubiquinone oxidored... [more]
ETFD_CAEEL1.093e-6150.64Electron transfer flavoprotein-ubiquinone oxidored... [more]
ETFD_SCHPO1.250e-5749.36Probable electron transfer flavoprotein-ubiquinone... [more]
ETFD_PSEAE2.786e-5751.30Electron transfer flavoprotein-ubiquinone oxidored... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12C07_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12C07-F14-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671640 ID=CX671640; Name=CX671640; organism=Citrus sinensis; type=EST; length=843bp
GAACGTTGCTAAAATGGGCTATTTCATTACTTCAGGAAGGAGATCAACAT
TTCATACATTTCGCTGGTTTGAGCTTTGTGAGCATTGAGAGGGTCACTTT
CCGGTGGCCGAAAGTTATTATTGTGAATACAAGCCAACATTATTTTGCAT
CGAGCAGTGCGGTGTCTACATGACCGAATAGCCAGGGCCACCACCTCCCT
CTGGCACCGTCCATTCGATGTTCTGCTTTGGATCTTTGATGTCGCATGCC
TTGCAATGCAAGCAATTTTGAGCATTGATCTGCAGCTTGAGCTGATTCTT
TTCATCTGGGACATACTCGTATACACGGGCAGGACAATATCGAGACTCAG
GTCCAGCATACTCTGGTAAATTCACAAGTTCAGGAATCTTTGGGTCCCTT
AAGCGAAGATGAGCAGGTTGATCGTGTTCATGATTTGTGTTGCTCCTGTG
CAGGGAGGTTGGTACGTCAAAAGATAATACCCCATCAGGCTTTGGATATT
CAATTGGTGAGTGTAGGCGTGCAGCATCGGTTGCTTCGTAATCAGGCTTC
CCATGCTTCAGTGTGTAGGGCGACTTTCCTCTCAGTATGTAGTGCTCTAA
CCCGCAGATTGCCAAACCAGGAAGTAGTCCATACTCGAATGCAGGTCGGT
AGTTTCTAGCTCTTTGGAGTTCTTGCCACACCCATGAATTCCGCAGGGTG
TCCCAATATATCTCCATATTCAAGTCCTCATGTAATACACCAAAGCCAGC
TTCGGCTGCAAGCATTCCTGATTTCATTGCAGTATGGGTTCCCTTTATTT
TTGGTACATTCAAGAAGCCAGCCGCACATCCAATAATTGCTCC
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