CX671639

Overview
NameCX671639
Unique NameCX671639
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671639 vs. ExPASy Swiss-Prot
Match: VPS35_HUMAN (Vacuolar protein sorting-associated protein 35 OS=Homo sapiens GN=VPS35 PE=1 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 4.435e-37
Identity = 93/222 (41.89%), Postives = 134/222 (60.36%), Query Frame = -1
Query:  226 EMALRLYLQCAEAANDCDLE---PVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGVENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWV---DDQDG--IKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEMQS-ESTTLDPAANAFFASTKRYIEFQKKKGGAMGEKYD 864
            E+ LRL+LQ A AA +   E    VAYEF +QAF LYE+EI+DSKAQ+ AI LIIGT +R+  F  EN + L  +    +++LLKKPDQ RAV  C+HLFW     D++G  +  G+RV+ CLK+AL+IAN            S  V LF+EILN+Y+YF+EK N  +T   +  LI+ I  ++ + ES+      N  F +T  ++  +++   + G  Y+
Sbjct:  578 ELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMD-------PSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLRRESPESEGPIYE 792          
BLAST of CX671639 vs. ExPASy Swiss-Prot
Match: VPS35_BOVIN (Vacuolar protein sorting-associated protein 35 OS=Bos taurus GN=VPS35 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.435e-37
Identity = 93/222 (41.89%), Postives = 134/222 (60.36%), Query Frame = -1
Query:  226 EMALRLYLQCAEAANDCDLE---PVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGVENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWV---DDQDG--IKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEMQS-ESTTLDPAANAFFASTKRYIEFQKKKGGAMGEKYD 864
            E+ LRL+LQ A AA +   E    VAYEF +QAF LYE+EI+DSKAQ+ AI LIIGT +R+  F  EN + L  +    +++LLKKPDQ RAV  C+HLFW     D++G  +  G+RV+ CLK+AL+IAN            S  V LF+EILN+Y+YF+EK N  +T   +  LI+ I  ++ + ES+      N  F +T  ++  +++   + G  Y+
Sbjct:  578 ELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMD-------PSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLRRESPESEGPIYE 792          
BLAST of CX671639 vs. ExPASy Swiss-Prot
Match: VPS35_MOUSE (Vacuolar protein sorting-associated protein 35 OS=Mus musculus GN=Vps35 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.566e-37
Identity = 93/222 (41.89%), Postives = 134/222 (60.36%), Query Frame = -1
Query:  226 EMALRLYLQCAEAANDCDLE---PVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGVENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWV---DDQDG--IKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEMQS-ESTTLDPAANAFFASTKRYIEFQKKKGGAMGEKYD 864
            E+ LRL+LQ A AA +   E    VAYEF +QAF LYE+EI+DSKAQ+ AI LIIGT +R+  F  EN + L  +    +++LLKKPDQ RAV  C+HLFW     D++G  +  G+RV+ CLK+AL+IAN            S  V LF+EILN+Y+YF+EK N  +T   +  LI+ I  ++ + ES+      N  F +T  ++  +++   + G  Y+
Sbjct:  578 ELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMD-------PSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRSRRESPESEGPIYE 792          
BLAST of CX671639 vs. ExPASy Swiss-Prot
Match: VPS35_SCHPO (Vacuolar protein sorting-associated protein 35 OS=Schizosaccharomyces pombe GN=vps35 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.785e-31
Identity = 75/184 (40.76%), Postives = 108/184 (58.70%), Query Frame = -1
Query:  331 SPEMALRLYLQCAEAANDCDLEPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGVENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWV----DDQDGIKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEMQS 870
            S E+ L LYL  AE A+  +    AYEFFTQAF +YEE + DS+ Q   + +IIG LQ+   F V++ DTL  K T Y+++LLKKPDQC  +Y  SHL+W     +D    +D +RVL CL+++L+IA+A        +       LF+ IL +Y Y++++    I A  I  LI+L    M+S
Sbjct:  551 SLELCLALYLSAAEMADQENYPDFAYEFFTQAFSIYEESVLDSELQYQQLLMIIGKLQKTRNFSVDDYDTLITKCTLYASKLLKKPDQCCGIYLASHLWWQVASGEDSRPFQDPKRVLECLQKSLKIADACMDQLTSLK-------LFINILERYFYYYDQHCESIIAKHISGLIDLTEQNMRS 727          
BLAST of CX671639 vs. ExPASy Swiss-Prot
Match: VPS35_YEAST (Vacuolar protein sorting-associated protein 35 OS=Saccharomyces cerevisiae GN=VPS35 PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 4.446e-29
Identity = 75/193 (38.86%), Postives = 119/193 (61.66%), Query Frame = -1
Query:  331 EMALRLYLQCAEAANDCDLEPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRI-SVFGVENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFW------VDDQDGI-----KDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFF---EKGNTQITASAIQSLIELITSEMQS 864
            ++ L+L LQCA  A+   L  ++Y+FF+QAF ++EE ++DSK Q+ A+  I  +LQ+  S++     D+L  + T + ++LLKK DQCRAVY CSHL+W      + +++GI     +DG+RVL CL+R+LR+A++          +     L VEILN+ LY+F   ++  T I+   I  LIELI + ++S
Sbjct:  647 DLILKLNLQCAILADQLQLNEISYDFFSQAFTIFEESLSDSKTQLQALIYIAQSLQKTRSLYKEAYYDSLIVRCTLHGSKLLKKQDQCRAVYLCSHLWWATEISNIGEEEGITDNFYRDGKRVLECLQRSLRVADSIMD-------NEQSCELMVEILNRCLYYFIHGDESETHISIKYINGLIELIKTNLKS 832          
BLAST of CX671639 vs. ExPASy Swiss-Prot
Match: VPS35_DICDI (Vacuolar sorting protein 35 OS=Dictyostelium discoideum GN=vps35 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.061e-22
Identity = 68/206 (33.01%), Postives = 112/206 (54.37%), Query Frame = -1
Query:  250 EMALRLYLQCAEAANDCDLEPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGVENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWVDDQD-GIKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEMQSESTTLDPAANAFFASTKRYIEFQKKKG 864
            +++ RLYLQ  +  + C L     E   +A ++++E+IAD KAQV A+ L+I TL  +S+   E  ++L  +    ++RLL   DQ + +  CSHLFWVD+     ++ + VL  LK+AL I         ++  SS  +  FV+ILN+ L++ +K    +    +  L+ELI +    E+   DPA   +  +T +YI+ Q  KG
Sbjct:  586 DLSFRLYLQALQTFDHCGLVSRVKELAIKALLIFQEDIADFKAQVMALQLLISTLNSLSIPNEEIYESLAAQTIKQASRLLLPQDQAKLISTCSHLFWVDNPSRQYQNPDSVLQALKKALSI---------ISNESSPGLGTFVDILNECLFYCDKETDAVPIQFVSDLVELIRTTHVKEA---DPAL-PYLQNTIKYIQSQNYKG 778          
The following BLAST results are available for this feature:
BLAST of CX671639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
VPS35_HUMAN4.435e-3741.89Vacuolar protein sorting-associated protein 35 OS=... [more]
VPS35_BOVIN4.435e-3741.89Vacuolar protein sorting-associated protein 35 OS=... [more]
VPS35_MOUSE7.566e-3741.89Vacuolar protein sorting-associated protein 35 OS=... [more]
VPS35_SCHPO2.785e-3140.76Vacuolar protein sorting-associated protein 35 OS=... [more]
VPS35_YEAST4.446e-2938.86Vacuolar protein sorting-associated protein 35 OS=... [more]
VPS35_DICDI1.061e-2233.01Vacuolar sorting protein 35 OS=Dictyostelium disco... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_12C07_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12C07-F14-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671639 ID=CX671639; Name=CX671639; organism=Citrus sinensis; type=EST; length=873bp
TTTTAACACCTAAAAAAAATTTTTTTTTATTACACTTAAAGTTACAGAAA
CCTGTGAAGGTGACAGCGACAATAAAACCCTTAAACAGAAGAAATCAATT
TTCTTTTCATTTGTGACATGAAAGTAATGAATCTAAGACTTTGACACTTG
GGGGGGGGGGGGGTCTGTATTTACTTTTCCGAGAATTTTTCTGTATCGAG
CTCAAAAAAGTCACACGTTGATGGGATCATATTTCTCACCCATTGCACCA
CCTTTCTTTTTCTGGAATTCAATGTACCGTTTCGTGCTCGCAAAGAAAGC
ATTAGCAGCAGGATCTAGGGTTGTGGACTCACTCTGCATCTCACTAGTGA
TTAACTCAATGAGGCTTTGTATTGCTGAAGCTGTGATCTGTGTGTTTCCT
TTCTCAAAAAAATAGAGGTACTTGTTAAGTATTTCAACAAAGAGAACTAC
AGGCCCGCTGCTACCCCGTGCAACATTGGCCATTTGTTGAGCAGCATTCG
CAATCCTCAAGGCACGCTTTAGGCATAGGAGGACCCTTTCTCCGTCCTTA
ATACCATCTTGATCATCAACCCAAAAGAGATGTGAGCATGCATAAACTGC
TCGGCACTGATCGGGTTTCTTTAAAAGCCTTGCAGAATACCCAGTGGCCT
TGTGTGTCAAAGTATCCCTATTCTCAACACCAAATACACTTATCCTCTGT
AGAGTTCCAATTATCAGATGTATTGCTGTCACCTGGGCTTTGGAGTCCGC
AATTTCTTCTTCATATAACATAAATGCTTGAGTGAAAAATTCATAGGCAA
CAGGCTCGAGATCACAGTCATTAGCAGCCTCAGCACATTGCAGGTATAAT
CTCAATGCCATTTCAGGTGATGG
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