CX671638

Overview
NameCX671638
Unique NameCX671638
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671638 vs. ExPASy Swiss-Prot
Match: TAF13_PONAB (Transcription initiation factor TFIID subunit 13 OS=Pongo abelii GN=TAF13 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.845e-22
Identity = 52/94 (55.32%), Postives = 73/94 (77.66%), Query Frame = 2
Query:  422 KRKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSVEDFLYLIRKDLPKLNRCTELLSMQEELKQARKAFE 703
            KRKR +F K+L+ MMYGFGDD NP  E+V ++ED+V+E++T++ HKA  IG + G++ VED ++LIRKD  K  R  +LL+M EELK+ARKAF+
Sbjct:   27 KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118          
BLAST of CX671638 vs. ExPASy Swiss-Prot
Match: TAF13_MOUSE (Transcription initiation factor TFIID subunit 13 OS=Mus musculus GN=Taf13 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.845e-22
Identity = 52/94 (55.32%), Postives = 73/94 (77.66%), Query Frame = 2
Query:  422 KRKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSVEDFLYLIRKDLPKLNRCTELLSMQEELKQARKAFE 703
            KRKR +F K+L+ MMYGFGDD NP  E+V ++ED+V+E++T++ HKA  IG + G++ VED ++LIRKD  K  R  +LL+M EELK+ARKAF+
Sbjct:   27 KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118          
BLAST of CX671638 vs. ExPASy Swiss-Prot
Match: TAF13_HUMAN (Transcription initiation factor TFIID subunit 13 OS=Homo sapiens GN=TAF13 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.845e-22
Identity = 52/94 (55.32%), Postives = 73/94 (77.66%), Query Frame = 2
Query:  422 KRKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSVEDFLYLIRKDLPKLNRCTELLSMQEELKQARKAFE 703
            KRKR +F K+L+ MMYGFGDD NP  E+V ++ED+V+E++T++ HKA  IG + G++ VED ++LIRKD  K  R  +LL+M EELK+ARKAF+
Sbjct:   27 KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118          
BLAST of CX671638 vs. ExPASy Swiss-Prot
Match: TAF13_BOVIN (Transcription initiation factor TFIID subunit 13 OS=Bos taurus GN=TAF13 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.845e-22
Identity = 52/94 (55.32%), Postives = 73/94 (77.66%), Query Frame = 2
Query:  422 KRKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSVEDFLYLIRKDLPKLNRCTELLSMQEELKQARKAFE 703
            KRKR +F K+L+ MMYGFGDD NP  E+V ++ED+V+E++T++ HKA  IG + G++ VED ++LIRKD  K  R  +LL+M EELK+ARKAF+
Sbjct:   27 KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118          
BLAST of CX671638 vs. ExPASy Swiss-Prot
Match: TAF13_DICDI (Transcription initiation factor TFIID subunit 13 OS=Dictyostelium discoideum GN=taf13 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20
Identity = 48/96 (50.00%), Postives = 68/96 (70.83%), Query Frame = 2
Query:  416 SFKRKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSVEDFLYLIRKDLPKLNRCTELLSMQEELKQARKAFE 703
            S KRKR +F K+L+HMMYGFGD   PL E++ L+E++V E++ ++  KA  + +K GK   ED ++L+RKD  K  R  ELL M EELK+A+KAF+
Sbjct:    2 STKRKR-MFSKELKHMMYGFGDVREPLHESIDLLEELVFEFIQEMTLKAAQVSNKRGKFQTEDLVFLVRKDPKKYYRVIELLRMNEELKKAKKAFD 96          
BLAST of CX671638 vs. ExPASy Swiss-Prot
Match: TAF13_SCHPO (Transcription initiation factor TFIID subunit 13 OS=Schizosaccharomyces pombe GN=taf13 PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14
Identity = 35/93 (37.63%), Postives = 59/93 (63.44%), Query Frame = 2
Query:  425 RKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSVEDFLYLIRKDLPKLNRCTELLSMQEELKQARKAFE 703
            R++ +F KDL+ +MY FGDD NP P+++ ++E+IVV+Y+ ++  +A  I     K+ V+DF + +R D  KL R  ELL +Q+ +   R   +
Sbjct:   13 RRQHLFTKDLKSLMYAFGDDVNPAPDSINVLEEIVVDYINEMCLEAARIAGNRNKVKVDDFKFALRDDPKKLGRVEELLVLQKMIADTRNVMK 105          
BLAST of CX671638 vs. ExPASy Swiss-Prot
Match: TAF13_YEAST (Transcription initiation factor TFIID subunit 13 OS=Saccharomyces cerevisiae GN=TAF13 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 35/96 (36.46%), Postives = 58/96 (60.42%), Query Frame = 2
Query:  425 RKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLA----HKAQDIGSKGGKLSVEDFLYLIRKDLPKLNRCTELLSMQEELKQARKAF 700
            +K  +F KD+  ++Y +GD P PL  TV  ++++V  Y+ D+     H AQ+  S+  KL +EDF + +RKD  KL R  EL++  + + +A+K F
Sbjct:    6 KKTNLFNKDVSSLLYAYGDVPQPLQATVQCLDELVSGYLVDVCTNAFHTAQN--SQRNKLRLEDFKFALRKDPIKLGRAEELIATNKLITEAKKQF 99          
The following BLAST results are available for this feature:
BLAST of CX671638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TAF13_PONAB2.845e-2255.32Transcription initiation factor TFIID subunit 13 O... [more]
TAF13_MOUSE2.845e-2255.32Transcription initiation factor TFIID subunit 13 O... [more]
TAF13_HUMAN2.845e-2255.32Transcription initiation factor TFIID subunit 13 O... [more]
TAF13_BOVIN2.845e-2255.32Transcription initiation factor TFIID subunit 13 O... [more]
TAF13_DICDI5.933e-2050.00Transcription initiation factor TFIID subunit 13 O... [more]
TAF13_SCHPO3.725e-1437.63Transcription initiation factor TFIID subunit 13 O... [more]
TAF13_YEAST8.587e-1136.46Transcription initiation factor TFIID subunit 13 O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_12C06_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12C06-F12-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671638 ID=CX671638; Name=CX671638; organism=Citrus sinensis; type=EST; length=708bp
GTGTACCGGTCTCACTCCTTCACGTCATTTCTGTTAATCTTAGAAGCTTT
TATCGATAGGAAAAATAAAAGAGAAGAGATTGATTAGTTTGTACTAGGAA
TCGTTTTGTAATGGGGGCGCGATAGAGTTAGGAGAAAAAGTTAGATTTTT
CTTCTTTTTAATTTCCATGTTATGCTTATTCTCTGCCATCAAAATTCAAT
GTTCCAGATGACAGTTAGGGTTTTAAGTTTTCCGTAGCATTTTTTTTAGG
TGTCTGTGTAGTTAGTTATATTCTATTTGAATTTGATTGCTGAATCGAAG
TTGATTTTCGGATAGGTTTTAAAGGAAGAAAGTTAGTGCATATAAGATGA
GCAACCCTTCTACGGGACAATCCTCAAAATCAAAAGCAGGATCCTCGCAG
CCCTATGAAACAACTTCATTTAAGCGCAAGCGAGGAGTCTTTCAAAAAGA
TCTTCAGCACATGATGTATGGTTTTGGCGATGATCCTAATCCACTTCCAG
AAACCGTGGCCCTTGTGGAGGACATAGTTGTGGAGTATGTCACAGATTTG
GCACACAAAGCGCAAGATATTGGTTCAAAGGGAGGAAAGCTATCCGTTGA
AGATTTTCTTTATTTAATTCGAAAGGACCTGCCAAAACTTAACCGCTGTA
CAGAATTGTTGTCCATGCAAGAGGAGCTGAAGCAGGCAAGAAAAGCTTTT
GAGGTAGA
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