CX671637

Overview
NameCX671637
Unique NameCX671637
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8937 contig Csv1_Contig8937:178..969. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX671637 vs. ExPASy Swiss-Prot
Match: SUC4_ARATH (Sucrose transport protein SUC4 OS=Arabidopsis thaliana GN=SUC4 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.481e-14
Identity = 39/64 (60.94%), Postives = 44/64 (68.75%), Query Frame = -2 
Query:  600 LGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVXXXXXXXXXXXXXXXIPRSSAQKPRALP 791
            LGVLNLAIVIPQ++VS+GSGPWDQLFGGGNSPA AV               +PR+  QKP  LP
Sbjct:  447 LGVLNLAIVIPQVIVSVGSGPWDQLFGGGNSPALAVGAATGFIGGIVAILALPRTRIQKPIPLP 510
[Close]
BLAST of CX671637 vs. ExPASy Swiss-Prot
Match: SUT2_ORYSJ (Sucrose transport protein 2 OS=Oryza sativa subsp. japonica GN=SUT2 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.477e-12
Identity = 30/36 (83.33%), Postives = 36/36 (100.00%), Query Frame = -2 
Query:  684 LGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAV 791
            +G+LNLAIVIPQ++VS+GSGPWDQLFGGGN+PAFAV
Sbjct:  437 MGILNLAIVIPQVIVSLGSGPWDQLFGGGNAPAFAV 472
[Close]
BLAST of CX671637 vs. ExPASy Swiss-Prot
Match: SUT2_ORYSI (Sucrose transport protein 2 OS=Oryza sativa subsp. indica GN=SUT2M PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.477e-12
Identity = 30/36 (83.33%), Postives = 36/36 (100.00%), Query Frame = -2 
Query:  684 LGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAV 791
            +G+LNLAIVIPQ++VS+GSGPWDQLFGGGN+PAFAV
Sbjct:  437 MGILNLAIVIPQVIVSLGSGPWDQLFGGGNAPAFAV 472
The following BLAST results are available for this feature:
BLAST of CX671637 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SUC4_ARATH4.481e-1460.94Sucrose transport protein SUC4 OS=Arabidopsis thal... [more]
SUT2_ORYSJ5.477e-1283.33Sucrose transport protein 2 OS=Oryza sativa subsp.... [more]
SUT2_ORYSI5.477e-1283.33Sucrose transport protein 2 OS=Oryza sativa subsp.... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_12C06_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12C06-F12-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671637 ID=CX671637; Name=CX671637; organism=Citrus sinensis; type=EST; length=792bp
CCAAATCAGGGCATAAAAGGTATGTCAGCATCAGGGTTTCAATCAGCGCA
ACTCACACAGTAACAGTTCGCCACCAAGCACAATTCACCGCATTCATGCA
TCAAATTACAGGCGCGAAATGCATGAGAATCCAACACATCACAATTGGAC
CACAATAGGGTCAATCAACTTTGCCTTCAGAAAATATGATGTTTCCATGC
GGAATAAATCCCAAATCGGCAGCGGCTTATCTTGAGTGGTAAGTAAGTAC
TCTTGGGAGTCACAAAGCAGCAATTCTAGAAGTGAAAATGAATTTCATCA
AAGAAATGTTGGACTCTTTTGGATAGCTCTCTCATGCAGTATTGAGTGGC
AATGATAATTAAATGTTACATTTAAGTTCCTATTATGGTTATGCACATAT
GTTGCTTGTTTCTCTTTGTCCACAAGCGCCACTGTTGATAGAGTCCCTTT
GAGCCTATGACTTGATTCCCAGAAACTTTCTCACTGTTTCCAGTTTAATT
TATTATTTGGCTATAGTGTTCTCAAAACTTCAAAAACTTCCAAGCAATTC
GATGCATTTAGACACTCACACATTTGGTAACCAAAGTAGGATCAGCTCAT
GGGAGGGCCCTGGGCTTCTGAGCGCTAGATCGAGGAATAGCTAATATTGC
TATGAGTCCACCAGCAAGGGCTGAAATTCCCCCAACAGCAAATGCTGGTG
AGTTTCCACCACCAAAGAGTTGATCCCATGGTCCGCTTCCCATGGAAACC
ACAATCTGTGGGATCACAATTGCCAGATTCAAAACACCCAAT
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