CX671619

Overview
NameCX671619
Unique NameCX671619
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length399
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13356 contig Csv1_Contig13356:274..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671619 vs. ExPASy Swiss-Prot
Match: CSK2A_MAIZE (Casein kinase II subunit alpha OS=Zea mays GN=ACK2 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.818e-17
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 3
Query:    3 HLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFYQVRAAENSRVRA 143
            HLVSPEAIDFLDKLLRYDHQ+RLTA EAM HPYF QVRAAENSR RA
Sbjct:  286 HLVSPEAIDFLDKLLRYDHQERLTALEAMTHPYFQQVRAAENSRTRA 332          
BLAST of CX671619 vs. ExPASy Swiss-Prot
Match: CSK22_ARATH (Casein kinase II subunit alpha-2 OS=Arabidopsis thaliana GN=CKA2 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.818e-17
Identity = 41/46 (89.13%), Postives = 45/46 (97.83%), Query Frame = 3
Query:    3 HLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFYQVRAAENSRVR 140
            HLVSPEAID+LDKLLRYDHQDRLTA+EAMAHPYF QVRAAE+SR+R
Sbjct:  286 HLVSPEAIDYLDKLLRYDHQDRLTAKEAMAHPYFAQVRAAESSRMR 331          
BLAST of CX671619 vs. ExPASy Swiss-Prot
Match: CSK21_ARATH (Casein kinase II subunit alpha-1 OS=Arabidopsis thaliana GN=CKA1 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 6.910e-17
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 3
Query:    3 HLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFYQVRAAENSRVRA 143
            HLVSPEAIDFLDKLLRYDHQDRLTA+EAMAH YF QVRAAE SR+R+
Sbjct:  286 HLVSPEAIDFLDKLLRYDHQDRLTAKEAMAHAYFAQVRAAETSRMRS 332          
BLAST of CX671619 vs. ExPASy Swiss-Prot
Match: CSK23_ARATH (Probable casein kinase II subunit alpha OS=Arabidopsis thaliana GN=At2g23080 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.179e-16
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 3
Query:    3 HLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFYQVRAAENSRVR 140
            HLVSPEAIDFLDKLL+YDHQDRLTAREAM HPYF QV+AAE+SR+R
Sbjct:  286 HLVSPEAIDFLDKLLQYDHQDRLTAREAMDHPYFAQVKAAESSRLR 331          
BLAST of CX671619 vs. ExPASy Swiss-Prot
Match: CSK21_RAT (Casein kinase II subunit alpha OS=Rattus norvegicus GN=Csnk2a1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.635e-13
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 3
Query:    3 HLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFYQV 113
            HLVSPEA+DFLDKLLRYDHQ RLTAREAM HPYFY V
Sbjct:  291 HLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTV 327          
BLAST of CX671619 vs. ExPASy Swiss-Prot
Match: CSK21_RABIT (Casein kinase II subunit alpha OS=Oryctolagus cuniculus GN=CSNK2A1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.635e-13
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 3
Query:    3 HLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFYQV 113
            HLVSPEA+DFLDKLLRYDHQ RLTAREAM HPYFY V
Sbjct:  291 HLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTV 327          
BLAST of CX671619 vs. ExPASy Swiss-Prot
Match: CSK21_HUMAN (Casein kinase II subunit alpha OS=Homo sapiens GN=CSNK2A1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.635e-13
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 3
Query:    3 HLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFYQV 113
            HLVSPEA+DFLDKLLRYDHQ RLTAREAM HPYFY V
Sbjct:  291 HLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTV 327          
BLAST of CX671619 vs. ExPASy Swiss-Prot
Match: CSK21_BOVIN (Casein kinase II subunit alpha OS=Bos taurus GN=CSNK2A1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.635e-13
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 3
Query:    3 HLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFYQV 113
            HLVSPEA+DFLDKLLRYDHQ RLTAREAM HPYFY V
Sbjct:  291 HLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTV 327          
BLAST of CX671619 vs. ExPASy Swiss-Prot
Match: CSK21_CHICK (Casein kinase II subunit alpha OS=Gallus gallus GN=CSNK2A1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.054e-13
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 3
Query:    3 HLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFYQV 113
            HLVSPEA+DFLDKLLRYDHQ RLTAREAM HPYFY +
Sbjct:  291 HLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYPI 327          
BLAST of CX671619 vs. ExPASy Swiss-Prot
Match: CSK21_XENLA (Casein kinase II subunit alpha OS=Xenopus laevis GN=csnk2a1 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.033e-12
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 3
Query:    3 HLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFYQV 113
            HLVSPEA+DFLDKLLRYDHQ RLTAREAM HPYFY +
Sbjct:  291 HLVSPEALDFLDKLLRYDHQTRLTAREAMDHPYFYPI 327          
The following BLAST results are available for this feature:
BLAST of CX671619 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
CSK2A_MAIZE1.818e-1789.36Casein kinase II subunit alpha OS=Zea mays GN=ACK2... [more]
CSK22_ARATH1.818e-1789.13Casein kinase II subunit alpha-2 OS=Arabidopsis th... [more]
CSK21_ARATH6.910e-1787.23Casein kinase II subunit alpha-1 OS=Arabidopsis th... [more]
CSK23_ARATH1.179e-1686.96Probable casein kinase II subunit alpha OS=Arabido... [more]
CSK21_RAT4.635e-1389.19Casein kinase II subunit alpha OS=Rattus norvegicu... [more]
CSK21_RABIT4.635e-1389.19Casein kinase II subunit alpha OS=Oryctolagus cuni... [more]
CSK21_HUMAN4.635e-1389.19Casein kinase II subunit alpha OS=Homo sapiens GN=... [more]
CSK21_BOVIN4.635e-1389.19Casein kinase II subunit alpha OS=Bos taurus GN=CS... [more]
CSK21_CHICK6.054e-1386.49Casein kinase II subunit alpha OS=Gallus gallus GN... [more]
CSK21_XENLA1.033e-1286.49Casein kinase II subunit alpha OS=Xenopus laevis G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12B09_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12B09-D18-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671619 ID=CX671619; Name=CX671619; organism=Citrus sinensis; type=EST; length=399bp
AGCATCTAGTTTCCCCAGAGGCCATTGATTTTCTTGATAAGCTTCTTCGC
TATGATCACCAGGACAGGCTTACAGCCAGAGAGGCAATGGCTCATCCTTA
TTTCTATCAAGTGAGGGCTGCAGAAAATAGCAGAGTGCGCGCGCATTAGC
TCCATGCTTAGTCCCTTCCTGAGTATACTTGTATTTCATTTGGGCCCATT
CTTATGGATGGAGTATATTTCTGGTCTATTGATAAGTCGTTGTACCAGTA
GTCTATAGCTCGCATCCATATTTTCAGATGGTCTATTGACAAGTAGTTGG
TAGTATACTTGTATTTCATTTGAGCTTTAATGTTGCTCGTGTGGACTGTA
CAGCTTGTTCCGTTGTGTTTGCCTTATACATGTCAATTATTTGTACAAA
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