CX671616

Overview
NameCX671616
Unique NameCX671616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX671616 vs. ExPASy Swiss-Prot
Match: NUP53_DANRE (Nucleoporin NUP53 OS=Danio rerio GN=nup35 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.559e-13
Identity = 51/148 (34.46%), Postives = 77/148 (52.03%), Query Frame = -2 
Query:  161 IVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKP-LDPMQRQALNERINSQGFMTLP--PPSSRTSELNSFRASSRPY---YLQNGNTSTGQSGGAIASPAKSMVSKIMDLMFG 586
            I  F FPPA  + +L +F + G ILKHV      NWMH+ YQ++  A+KALSK+G      +++GVKP +D    ++L++   S    T P   P + +  L++ R+  RP    Y  + +     S        +S VSK M+ MFG
Sbjct:  161 ITVFGFPPASASYILLQFAQYGNILKHVMS-NTGNWMHVQYQSKLQARKALSKDGKIFGEAIMIGVKPCIDKSVMESLDKGSTSSSVFTPPVKAPCTPSHPLSTPRSVMRPLSAAYKASSSDYQVVSDQQTPKKDESFVSKAMEYMFG 307
[Close]
BLAST of CX671616 vs. ExPASy Swiss-Prot
Match: NUP53_HUMAN (Nucleoporin NUP53 OS=Homo sapiens GN=NUP35 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.100e-11
Identity = 50/159 (31.45%), Postives = 79/159 (49.69%), Query Frame = -2 
Query:  161 IVPFRFPPADTNLVLREFEKCGVILKHVPGPRDANWMHILYQNRSDAQKALSKNGMQINGVLIVGVKP------LDPMQRQALNE-------RINSQGFMTLPPPSSRTSEL----NSFRASSRPYYLQNGNTSTGQSGGAIASPAKSMVSKIMDLMFG 586
            +  F FP A  + +L +F + G ILKHV      NWMHI YQ++  A+KALSK+G      +++GVKP      ++   R AL+         I + G  T P  + R S +     +++AS+  Y + +   +  +         +S+VSK M+ MFG
Sbjct:  176 VTVFGFPQASASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCIDKSVMESSDRCALSSPSLAFTPPIKTLGTPTQPGSTPRISTMRPLATAYKASTSDYQVISDRQTPKKD--------ESLVSKAMEYMFG 325
The following BLAST results are available for this feature:
BLAST of CX671616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NUP53_DANRE2.559e-1334.46Nucleoporin NUP53 OS=Danio rerio GN=nup35 PE=1 SV=... [more]
NUP53_HUMAN9.100e-1131.45Nucleoporin NUP53 OS=Homo sapiens GN=NUP35 PE=1 SV... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_12B07_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12B07-D14-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671616 ID=CX671616; Name=CX671616; organism=Citrus sinensis; type=EST; length=863bp
CAATTAGAGCTATATTATTCCCAAACCAGGGAAAATTGCCGATTTGAGCT
ACAAAGGACATTTGCAGATAGCCAGATACTCTCAATTATATATTTGAATT
GCTTCATACATTTGATTATAACAAGAAAATAGAAATCTAGTGGGTGACTG
TATCCTAAATGCCAAACATCAAATCCATGATTTTGGAAACCATAGACTTG
GCTGGGGAAGCAATGGCACCTCCTGACTGTCCTGTGCTTGTATTTCCATT
TTGAAGATAATATGGGCGCGAGGATGCTCTAAATGAGTTCAGCTCCGAGG
TTCTGCTGGACGGAGGGGGCAGAGTCATAAATCCTTGACTGTTAATTCTT
TCATTCAAAGCTTGGCGTTGCATTGGATCCAATGGTTTCACACCAACAAT
TAGGACTCCATTGATTTGCATCCCATTCTTGCTGAGAGCCTTTTGAGCAT
CAGAACGATTCTGATATAGAATGTGCATCCAGTTAGCATCTCTTGGACCA
GGAACATGTTTCAAGATCACACCACACTTTTCAAATTCTCGCAAAACCAA
ATTGGTATCAGCTGGAGGAAATCTGAAGGGAACAATCAAAAAGCTTGAGA
TTAGTGTCATAAATATGAAATACAATTTGTTACTCACATAATAGATATTC
AAGATAATATTTCTAACTTATTATTCAAAGGTTAAACCTTGCATAAACAC
TTGGCAACTTTAAAACAATCATAGAACAAGCAATCAGCCCAGCGGCTTAN
AAATAGTGTTTTATGGATGCCAAAGGAAATGAAATCTCTCCATCTAGTCC
CCAATAGCATGCATAGTAACATTTGATCACTTTTACAAAATGTTATTACA
AGACAGTGTCAGT
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