CX671593

Overview
NameCX671593
Unique NameCX671593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671593_ssr612 microsatellite CX671593_ssr612:612..621. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10229 contig Csv1_Contig10229:331..1009. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671593 vs. ExPASy Swiss-Prot
Match: PSBP_CUCSA (Oxygen-evolving enhancer protein 2, chloroplastic OS=Cucumis sativus GN=PSBP PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 8.833e-79
Identity = 145/167 (86.83%), Postives = 152/167 (91.02%), Query Frame = -3
Query:  189 PYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 677
            PY+GDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSN+SVII PTDKKSI D+GSPEEFLSKVDYLLGKQAY GKT+SEGGFDPDAVATANILEA+        YYF+SVLTRTADGDEGGKHQLITATV  GKLYICKAQAGDKRWFKGARK+VE  ASSFSVA
Sbjct:   97 PYSGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNLSVIINPTDKKSIKDFGSPEEFLSKVDYLLGKQAYFGKTASEGGFDPDAVATANILEATASNVNGKDYYFVSVLTRTADGDEGGKHQLITATVNDGKLYICKAQAGDKRWFKGARKFVEGAASSFSVA 263          
BLAST of CX671593 vs. ExPASy Swiss-Prot
Match: PSBP1_ARATH (Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Arabidopsis thaliana GN=PSBP1 PE=1 SV=2)

HSP 1 Score: 280.411 bits (716), Expect = 5.925e-75
Identity = 134/167 (80.24%), Postives = 154/167 (92.22%), Query Frame = -3
Query:  189 PYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 677
            PYNGDGFK+ +P+KWNPSKE E+PGQVLR+EDNFD+ SN++V++TPTDKKSITDYGSPEEFLS+V+YLLGKQAY G+T+SEGGFD +AVATANILE+S +     PYY+LSVLTRTADGDEGGKHQLITATV GGKLYICKAQAGDKRWFKGARK+VES A+SFSVA
Sbjct:   97 PYNGDGFKVQVPAKWNPSKEIEYPGQVLRFEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGKQAYFGETASEGGFDNNAVATANILESSSQEVGGKPYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGARKFVESAATSFSVA 263          
BLAST of CX671593 vs. ExPASy Swiss-Prot
Match: PSBP_SOLTU (Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum tuberosum GN=PSBP PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.941e-74
Identity = 136/167 (81.44%), Postives = 147/167 (88.02%), Query Frame = -3
Query:  189 PYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 677
            PYNGDGFKL IP+KWNPSKE EFPGQVLRYEDNFDS SN+ V +TPTDKKSITDYGSPEEFLSKVDYLLGKQAY GKT SEGGF+  AVATAN+LEAS        YY+LSVLTRTADGDEGGKHQLITATV  GKLYICKAQAGDKRWFKGA+K+VE+ A+SFS+A
Sbjct:   94 PYNGDGFKLQIPAKWNPSKEIEFPGQVLRYEDNFDSTSNLMVAVTPTDKKSITDYGSPEEFLSKVDYLLGKQAYFGKTDSEGGFESGAVATANLLEASSATVGGKQYYYLSVLTRTADGDEGGKHQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENAATSFSIA 260          
BLAST of CX671593 vs. ExPASy Swiss-Prot
Match: PSBP_PEA (Oxygen-evolving enhancer protein 2, chloroplastic OS=Pisum sativum GN=PSBP PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.941e-74
Identity = 137/167 (82.04%), Postives = 148/167 (88.62%), Query Frame = -3
Query:  189 PYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASV----RPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 677
            PYNGDGFKL +P+KWNPSKEREFPGQVLRYEDNFD+ SNVSV++  TDKKSITDYGSPEEFLSKVDYLLGKQA+ G+T SEGGFD +AVA ANILE+S        YY +SVLTRTADGDEGGKHQLITATVK GKLYICKAQAGDKRWFKGARK+VE TASSFSVA
Sbjct:   93 PYNGDGFKLLVPAKWNPSKEREFPGQVLRYEDNFDATSNVSVLVQTTDKKSITDYGSPEEFLSKVDYLLGKQAFFGQTDSEGGFDTNAVAVANILESSAPVIGGKQYYNISVLTRTADGDEGGKHQLITATVKDGKLYICKAQAGDKRWFKGARKFVEDTASSFSVA 259          
BLAST of CX671593 vs. ExPASy Swiss-Prot
Match: PSBP_SOLLC (Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum lycopersicum GN=PSBP PE=2 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 4.246e-73
Identity = 133/167 (79.64%), Postives = 146/167 (87.43%), Query Frame = -3
Query:  189 PYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 677
            PYNGDGFKL +P+KWNPSKE E+PGQVLRYEDNFDS SN+ V +TPTDKKSITDYGSPEEFLSKVDYLLGKQAY GKT SEGGF+  AVAT N+LEAS        YY+LSVLTRTADGDEGGKHQLITATV  GKLYICKAQAGDKRWFKGA+K+VE+ A+SFS+A
Sbjct:   92 PYNGDGFKLQVPAKWNPSKEVEYPGQVLRYEDNFDSTSNLIVAVTPTDKKSITDYGSPEEFLSKVDYLLGKQAYFGKTDSEGGFESGAVATRNLLEASSATVGGKEYYYLSVLTRTADGDEGGKHQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENAATSFSIA 258          
BLAST of CX671593 vs. ExPASy Swiss-Prot
Match: PSBP_SINAL (Oxygen-evolving enhancer protein 2, chloroplastic OS=Sinapis alba GN=PSBP PE=2 SV=2)

HSP 1 Score: 271.552 bits (693), Expect = 2.752e-72
Identity = 128/166 (77.11%), Postives = 151/166 (90.96%), Query Frame = -3
Query:  189 YNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 674
            Y+GDGF++ +P+KWNPS+E E+PGQVLRYEDNFD+ SN++V++TPTDKKSITDYGSPEEFLS+V+YLLGKQAY G+T+SEGGFD +AVATANILE +++     PYY+LSVLTRTADGDEGGKHQLITATV GGKLYICKAQAGDKRWFKGA K+VE  A+SFSVA
Sbjct:   95 YSGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGKQAYFGETASEGGFDNNAVATANILETNIQDVGGKPYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGANKFVEKAATSFSVA 260          
BLAST of CX671593 vs. ExPASy Swiss-Prot
Match: PSBP2_TOBAC (Oxygen-evolving enhancer protein 2-2, chloroplastic OS=Nicotiana tabacum GN=PSBP2 PE=1 SV=2)

HSP 1 Score: 271.166 bits (692), Expect = 3.595e-72
Identity = 131/166 (78.92%), Postives = 148/166 (89.16%), Query Frame = -3
Query:  189 YNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 674
            YNGDGFKL IPSKWNP+KE E+PGQVLR+EDNFD+ SNV V ITPTDKKSITD+GSPE+FLS+VDYLLG+QAYSGKT SEGGF+ DAVA AN+LE S       PYY+LSVLTRTADG+EGGKHQLITATV  GKLYICKAQAGDKRWFKGA+K+VE+TA+SFS+A
Sbjct:  100 YNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSSAEVGGKPYYYLSVLTRTADGNEGGKHQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 265          
BLAST of CX671593 vs. ExPASy Swiss-Prot
Match: PSBP1_TOBAC (Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Nicotiana tabacum GN=PSBP1 PE=3 SV=2)

HSP 1 Score: 270.396 bits (690), Expect = 6.131e-72
Identity = 132/166 (79.52%), Postives = 145/166 (87.35%), Query Frame = -3
Query:  189 YNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 674
            YNGDGFKL +P+KWNPSKE EFPGQVLRYEDNFDS SN+ V +TPTDKKSITDYGSPEEFL++VD+LLGKQAY GKT SEGGF+  AVATAN+LE S        YY LSVLTRTADGDEGGKHQLI+ATV GGKLYICKAQAGDKRWFKGARK+VE+ A+SFSVA
Sbjct:  103 YNGDGFKLQVPAKWNPSKEVEFPGQVLRYEDNFDSTSNLIVTVTPTDKKSITDYGSPEEFLTQVDFLLGKQAYFGKTDSEGGFESGAVATANLLETSSSTVGGKEYYILSVLTRTADGDEGGKHQLISATVNGGKLYICKAQAGDKRWFKGARKFVENAATSFSVA 268          
BLAST of CX671593 vs. ExPASy Swiss-Prot
Match: PSBP_SPIOL (Oxygen-evolving enhancer protein 2, chloroplastic OS=Spinacia oleracea GN=PSBP PE=1 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.046e-71
Identity = 129/167 (77.25%), Postives = 146/167 (87.43%), Query Frame = -3
Query:  189 PYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASV----RPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 677
            PYNGDGFKL +PSKWNPSKE+EFPGQVLRYEDNFD+ SN+SV++ PTDKKSITD+GSPE+FLS+VDYLLGKQAY GKT SEGGFD   VA+AN+LE+S        YY ++VLTRTADGDEGGKHQ+I ATVK GKLYICKAQAGDKRWFKGA+K+VES  SSFSVA
Sbjct:  101 PYNGDGFKLLVPSKWNPSKEKEFPGQVLRYEDNFDATSNLSVLVQPTDKKSITDFGSPEDFLSQVDYLLGKQAYFGKTDSEGGFDSGVVASANVLESSTPVVDGKQYYSITVLTRTADGDEGGKHQVIAATVKDGKLYICKAQAGDKRWFKGAKKFVESATSSFSVA 267          
BLAST of CX671593 vs. ExPASy Swiss-Prot
Match: PSBP_FRIAG (Oxygen-evolving enhancer protein 2, chloroplastic OS=Fritillaria agrestis GN=PSBP PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.366e-71
Identity = 132/167 (79.04%), Postives = 144/167 (86.23%), Query Frame = -3
Query:  189 PYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASV----RPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 677
            PY GDGF L IP+KWNPSKE EFPGQVLRYEDNFD  SNVSV +TPT KKSITDYG+PEEFLS VDYLLGKQAYSGKT+SEGGFDPD+VATANILE S        YY +SVLTRTADGDEGGKH +I+ATV  GKLYICKAQAGDKRWFKGA+K+VEST +SF+VA
Sbjct:   98 PYTGDGFNLLIPAKWNPSKEVEFPGQVLRYEDNFDVTSNVSVTVTPTSKKSITDYGTPEEFLSTVDYLLGKQAYSGKTASEGGFDPDSVATANILEVSTPVVGGKQYYNISVLTRTADGDEGGKHHVISATVTDGKLYICKAQAGDKRWFKGAKKFVESTTTSFNVA 264          
The following BLAST results are available for this feature:
BLAST of CX671593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PSBP_CUCSA8.833e-7986.83Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP1_ARATH5.925e-7580.24Oxygen-evolving enhancer protein 2-1, chloroplasti... [more]
PSBP_SOLTU2.941e-7481.44Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_PEA2.941e-7482.04Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_SOLLC4.246e-7379.64Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_SINAL2.752e-7277.11Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP2_TOBAC3.595e-7278.92Oxygen-evolving enhancer protein 2-2, chloroplasti... [more]
PSBP1_TOBAC6.131e-7279.52Oxygen-evolving enhancer protein 2-1, chloroplasti... [more]
PSBP_SPIOL1.046e-7177.25Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_FRIAG1.366e-7179.04Oxygen-evolving enhancer protein 2, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12A07_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12A07-B14-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671593 ID=CX671593; Name=CX671593; organism=Citrus sinensis; type=EST; length=679bp
TTTTTTTTTTTTTTTTTATACAAGAGGGCCCTTATATGCCATTAAATACT
CAAATATCCACAAGCTTTTTCCAACCAACTCCTTCAATTAGAAACTCAGA
AGCTTTTGGGGAAAGATGGGAGTAGATAATTCAAAACAAACAGCATACAT
TAAGTTGGATTTACATAAAAATTCTGATTAATGTCTCAAGCAACACTGAA
AGAACTGGCAGTGCTTTCCACATACTTTCTTGCTCCCTTAAACCACCTCT
TGTCTCCAGCTTGTGCCTTGCAGATGTAAAGCTTGCCACCTTTAACCGTG
GCTGTAATTAGTTGATGCTTGCCACCTTCATCTCCATCAGCAGTTCTTGT
TAATACAGACAAGAAGTAGTATGGTGGTCGGACTGAAGCCTCCAAGATGT
TAGCTGTTGCCACAGCATCAGGGTCGAAACCACCCTCAGACGAAGTTTTG
CCGGAATAGGCTTGTTTTCCCAGCAAGTAGTCCACCTTACTGAGGAATTC
CTCGGGGGAACCGTAGTCAGTGATGGATTTCTTGTCAGTTGGGGTGATTA
TGACGGAGACATTGCTGTTGGAATCGAAGTTGTCTTCGTATCTAAGAACC
TGACCCGGGAACTCTCTCTCTTTGCTGGGGTTCCATTTTGAGGGAATCGA
CAGCTTGAATCCATCTCCATTGTATGGCA
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