CX671590

Overview
NameCX671590
Unique NameCX671590
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671590 vs. ExPASy Swiss-Prot
Match: LE14B_PRUAR (LEC14B homolog OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 7.127e-54
Identity = 93/130 (71.54%), Postives = 106/130 (81.54%), Query Frame = -1
Query:  268 KMSSNTTDNSRLRDYDWDYRWMEYPSSARRLKHPHDQSSATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAP 657
            KMSS    + RLRD+DWDYRWMEYP+ A+ LKHP+DQS ATY+GH VLRTLIRCY SP YST QKYIYTGSSD+ VYIYDLV+GAQVA+L+ H  PVRDC WHP+YPML+SSSWD  I RWE PG  + P
Sbjct:  332 KMSSRAMYSPRLRDHDWDYRWMEYPAHAKTLKHPNDQSLATYRGHGVLRTLIRCYLSPAYSTGQKYIYTGSSDHCVYIYDLVTGAQVARLNHHEGPVRDCSWHPLYPMLVSSSWDGTIARWEFPGDDQVP 461          
BLAST of CX671590 vs. ExPASy Swiss-Prot
Match: LE14B_LITER (LEC14B protein OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.474e-48
Identity = 89/131 (67.94%), Postives = 101/131 (77.10%), Query Frame = -1
Query:  265 KMSSNTTDNSRLRDYDWDYRWMEYPSSARRLKHPHDQSSATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWEIPGIGEAPL 657
            KMSSN     + R+ +WDYRWMEYP  AR LKHP D S ATYKGHSVL TLIRCYFSP+YST QKYIYTGS D +VYIYDLV+G QV+ L +H A VRDC WHP YPML+SSS+D  IV+WE  G  EAP+
Sbjct:  334 KMSSNAGGTIQSRNSEWDYRWMEYPQEARDLKHPSDLSGATYKGHSVLCTLIRCYFSPDYSTGQKYIYTGSHDANVYIYDLVTGDQVSTLQYHKATVRDCSWHPNYPMLVSSSFDGEIVKWEYRGNDEAPV 464          
BLAST of CX671590 vs. ExPASy Swiss-Prot
Match: DCA11_BOVIN (DDB1- and CUL4-associated factor 11 OS=Bos taurus GN=DCAF11 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.015e-28
Identity = 58/108 (53.70%), Postives = 72/108 (66.67%), Query Frame = -1
Query:  292 DWDYRWMEYPSSA-RRLKHPHDQSSATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 612
            +WDYRW + P  A R+LK P D S  TY+GH VL TLIRC FSP +ST Q++IY+G S   V +YDL+SG  V KL  H A VRD  WHP    ++SSSWD N+  W+
Sbjct:  404 NWDYRWQQVPKKAWRKLKLPGDSSLMTYRGHGVLHTLIRCRFSPTHSTGQQFIYSGCSTGKVVVYDLLSGHVVKKLTTHKACVRDVSWHPFEEKIVSSSWDGNLRLWQ 511          
BLAST of CX671590 vs. ExPASy Swiss-Prot
Match: DCA11_PONAB (DDB1- and CUL4-associated factor 11 OS=Pongo abelii GN=DCAF11 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 8.773e-28
Identity = 58/108 (53.70%), Postives = 72/108 (66.67%), Query Frame = -1
Query:  292 DWDYRWMEYPSSA-RRLKHPHDQSSATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 612
            +WDYRW + P  A R+LK P D S  TY+GH VL TLIRC FSP +ST Q++IY+G S   V +YDL+SG  V KL  H A VRD  WHP    ++SSSWD N+  W+
Sbjct:  404 NWDYRWQQVPKKAWRKLKLPGDSSLMTYRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQ 511          
BLAST of CX671590 vs. ExPASy Swiss-Prot
Match: DCA11_HUMAN (DDB1- and CUL4-associated factor 11 OS=Homo sapiens GN=DCAF11 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.773e-28
Identity = 58/108 (53.70%), Postives = 72/108 (66.67%), Query Frame = -1
Query:  292 DWDYRWMEYPSSA-RRLKHPHDQSSATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 612
            +WDYRW + P  A R+LK P D S  TY+GH VL TLIRC FSP +ST Q++IY+G S   V +YDL+SG  V KL  H A VRD  WHP    ++SSSWD N+  W+
Sbjct:  404 NWDYRWQQVPKKAWRKLKLPGDSSLMTYRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQ 511          
BLAST of CX671590 vs. ExPASy Swiss-Prot
Match: DCA11_MOUSE (DDB1- and CUL4-associated factor 11 OS=Mus musculus GN=Dcaf11 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.954e-27
Identity = 57/108 (52.78%), Postives = 72/108 (66.67%), Query Frame = -1
Query:  292 DWDYRWMEYPSSA-RRLKHPHDQSSATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 612
            +WDYRW + P  A ++LK P D S  TY+GH VL TLIRC FSP +ST Q++IY+G S   V +YDL+SG  V KL  H A VRD  WHP    ++SSSWD N+  W+
Sbjct:  404 NWDYRWQQVPKIAWKKLKLPGDSSLMTYRGHGVLHTLIRCRFSPAHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQ 511          
BLAST of CX671590 vs. ExPASy Swiss-Prot
Match: DCA11_RAT (DDB1- and CUL4-associated factor 11 OS=Rattus norvegicus GN=Dcaf11 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.354e-27
Identity = 56/108 (51.85%), Postives = 72/108 (66.67%), Query Frame = -1
Query:  292 DWDYRWMEYPSSA-RRLKHPHDQSSATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRWE 612
            +WDYRW + P  A ++LK P D S  TY+GH VL TLIRC FSP +ST Q++IY+G S   V +YDL+SG  V KL  H A VRD  WHP    ++SSSWD ++  W+
Sbjct:  404 NWDYRWQQVPKKAWKKLKLPGDSSLMTYRGHGVLHTLIRCRFSPAHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRDVSWHPFEEKIVSSSWDGSLRLWQ 511          
BLAST of CX671590 vs. ExPASy Swiss-Prot
Match: DCA11_CAEEL (DDB1- and CUL4-associated factor 11 homolog OS=Caenorhabditis elegans GN=wdr-23 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.699e-19
Identity = 51/122 (41.80%), Postives = 67/122 (54.92%), Query Frame = -1
Query:  295 MSSNTTDNSRLRDYDWDYRWMEYPSSARRLKHP--HDQSSATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRW 654
            MS      + ++   WDYRW   P     L  P   D S  T +GHSVL TL+R  FSPE ST ++YIYTG +   V +YD++SG    +L  H A VR+C WHP    ++SS+WD     W
Sbjct:  394 MSGVEATRACVQSQHWDYRWQPAPPG---LCQPVAGDTSVMTLRGHSVLHTLVRANFSPE-STGRRYIYTGCARGEVVVYDIMSGTVSRRLKGHTAVVRECDWHPTENEIVSSAWDGVTTVW 511          
BLAST of CX671590 vs. ExPASy Swiss-Prot
Match: DCA11_CAEBR (DDB1- and CUL4-associated factor 11 homolog OS=Caenorhabditis briggsae GN=wdr-23 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.404e-17
Identity = 46/107 (42.99%), Postives = 62/107 (57.94%), Query Frame = -1
Query:  295 WDYRWMEYPSSARRLKHP--HDQSSATYKGHSVLRTLIRCYFSPEYSTAQKYIYTGSSDNSVYIYDLVSGAQVAKLDFHNAPVRDCCWHPIYPMLISSSWDCNIVRW 609
            WDYRW   P     L  P   D S  T +GHSVL TL+R  FSPE +T +++IYTG +   + +YD+V+G    +L  H A VR+C WHP    ++S+SWD     W
Sbjct:  388 WDYRWQPAPPG---LCQPVQGDTSVMTLRGHSVLHTLVRAKFSPE-NTGRRFIYTGCARGEIVVYDIVTGTVSRRLKGHQAVVRECDWHPQENEIVSTSWDGVTTVW 490          
The following BLAST results are available for this feature:
BLAST of CX671590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
LE14B_PRUAR7.127e-5471.54LEC14B homolog OS=Prunus armeniaca PE=2 SV=1[more]
LE14B_LITER4.474e-4867.94LEC14B protein OS=Lithospermum erythrorhizon PE=2 ... [more]
DCA11_BOVIN3.015e-2853.70DDB1- and CUL4-associated factor 11 OS=Bos taurus ... [more]
DCA11_PONAB8.773e-2853.70DDB1- and CUL4-associated factor 11 OS=Pongo abeli... [more]
DCA11_HUMAN8.773e-2853.70DDB1- and CUL4-associated factor 11 OS=Homo sapien... [more]
DCA11_MOUSE1.954e-2752.78DDB1- and CUL4-associated factor 11 OS=Mus musculu... [more]
DCA11_RAT4.354e-2751.85DDB1- and CUL4-associated factor 11 OS=Rattus norv... [more]
DCA11_CAEEL5.699e-1941.80DDB1- and CUL4-associated factor 11 homolog OS=Cae... [more]
DCA11_CAEBR1.404e-1742.99DDB1- and CUL4-associated factor 11 homolog OS=Cae... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_12A05_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12A05-B10-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671590 ID=CX671590; Name=CX671590; organism=Citrus sinensis; type=EST; length=657bp
TTTTTTTTTTTTTTTTTAGATGAATGCCACATATGTTAAGATTCAAATTA
AAATTTAGATGTTGGGATGCATAGTATTGCTCCAAATTTAATGGACTATA
AAATAGCAATCTGAAACATTTTTTGAGTTTTTTTTTTTTTAAAAAAGCTT
GATCATACACAGCACTACCCGTCCAAATTATCAAAACCTATGCGTGCATG
AAAGCATTATTCACCTCAATGCTCTTCCGAAAAAACGTCTTGCTCTTACT
GTTCTCCGCTTTGGTAGTGGAGCCTCACCGATCCCAGGAATTTCCCATCT
AACAATGTTGCAATCCCAAGAGGAGCTAATAAGCATAGGATAGATAGGGT
GCCAACAACAATCTCTTACGGGAGCATTATGGAAATCAAGTTTTGCAACT
TGGGCTCCACTCACTAGATCATAAATGTAAACAGAGTTATCACTAGATCC
GGTGTAGATGTACTTTTGAGCAGTGCTATATTCTGGGGAGAAGTAACAGC
GAATGAGAGTACGCAAGACCGAATGTCCTTTATATGTAGCCGATGATTGA
TCATGGGGATGTTTCAACCTTCTTGCAGAAGATGGGTATTCCATCCATCT
ATAATCCCAGTCATAATCTCTAAGCCTTGAATTATCTGTGGTGTTTGAGG
ACATCTT
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