CX671581

Overview
NameCX671581
Unique NameCX671581
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671581 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.438e-27
Identity = 64/100 (64.00%), Postives = 80/100 (80.00%), Query Frame = -2
Query:  582 SSSSMKDIIARYNMHSSNISKLNHPSLELQL-ENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKG 878
            SSSSMK I+ R ++HS N+ KL+ PSLELQL ENS Y  LS+EI++KS +LRQMRGE+L GL IEELQ LE  LE GLSRV++ KGD+IM EI+ L++KG
Sbjct:   58 SSSSMKQILERRDLHSKNLEKLDQPSLELQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLNIEELQQLERSLETGLSRVIERKGDKIMREINQLQQKG 157          
BLAST of CX671581 vs. ExPASy Swiss-Prot
Match: SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.878e-27
Identity = 62/99 (62.63%), Postives = 81/99 (81.82%), Query Frame = -2
Query:  582 SSSMKDIIARYNMHSSNISKLNHPSLELQL-ENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKG 875
            SSSMK+++ R+N+ S N+ KL+ PSLELQL ENS +  +S+EIADKS +LRQMRGE+L GL IEELQ LE  LE GL+RV++TK D+IM+EIS L++KG
Sbjct:   59 SSSMKEVLERHNLQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLDIEELQQLEKALETGLTRVIETKSDKIMSEISELQKKG 157          
BLAST of CX671581 vs. ExPASy Swiss-Prot
Match: MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.807e-23
Identity = 54/100 (54.00%), Postives = 74/100 (74.00%), Query Frame = -2
Query:  579 SSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGA 878
            +SSSM +II +YN HS+N+ K   PSL+L LE+SKY  L+ ++A+ S +LRQMRGE+L GL+I+ELQ LE  LE GL RV+ TK  + M +IS L+RK +
Sbjct:   58 ASSSMNEIIDKYNTHSNNLGKAEQPSLDLNLEHSKYAHLNEQLAEASLRLRQMRGEELEGLSIDELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSS 157          
BLAST of CX671581 vs. ExPASy Swiss-Prot
Match: MAD55_ORYSJ (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.082e-18
Identity = 55/122 (45.08%), Postives = 74/122 (60.66%), Query Frame = -2
Query:  582 SSSSMKDIIARYNMHSSNISKLN-HPSLEL----------------------QLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKG 878
            +SS+M +II +Y  HS N+ K +  PS++L                      QLE+SK  SL+ ++A+ S QLRQMRGE+L GL++EELQ +E  LE GL RVL TK  + M EIS L+RKG
Sbjct:   58 ASSNMNEIIDKYTTHSKNLGKTDKQPSIDLNFFLIILLRTYTNSYAYIHLLLQLEHSKCSSLNEQLAEASLQLRQMRGEELEGLSVEELQQMEKNLEAGLQRVLCTKDQQFMQEISELQRKG 179          
BLAST of CX671581 vs. ExPASy Swiss-Prot
Match: MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 7.911e-18
Identity = 49/99 (49.49%), Postives = 67/99 (67.68%), Query Frame = -2
Query:  585 SSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLS-LSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 878
            +S+SM+ II RYN HS  + +     L+LQ E+S   + L  E+A+ S +LRQMRGE+LH L +E+LQ LE  LE GL  VL+TK  +I++EI  LERK
Sbjct:   77 ASTSMEQIIDRYNSHSKTLQRAEPSQLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQELEKSLESGLGSVLKTKSKKILDEIDGLERK 175          
The following BLAST results are available for this feature:
BLAST of CX671581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
JOIN_SOLLC1.438e-2764.00MADS-box protein JOINTLESS OS=Solanum lycopersicum... [more]
SVP_ARATH1.878e-2762.63MADS-box protein SVP OS=Arabidopsis thaliana GN=SV... [more]
MAD22_ORYSJ2.807e-2354.00MADS-box transcription factor 22 OS=Oryza sativa s... [more]
MAD55_ORYSJ2.082e-1845.08MADS-box transcription factor 55 OS=Oryza sativa s... [more]
MAD47_ORYSJ7.911e-1849.49MADS-box transcription factor 47 OS=Oryza sativa s... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_11H10_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11H10-P19-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671581 ID=CX671581; Name=CX671581; organism=Citrus sinensis; type=EST; length=879bp
TTTGGTTTACAAATTAATATCCTTTTAGTTTGGTGATCATTCTTCCAGCC
CACAAGCTTAAATATGTCGGCAATTATCCAGAAGTGCTTACACAATTGGA
AAAGACAAATAAAAGTAAAAACCAAAAAATAGCTATCTTGTAGATGTCCA
CAATTAATGCAAACATATACAGTACAGTACAATCACAAATAGCAGTGACA
CCAAGCCAACGATAATCGGATCGGCGAGAATCCAGAACAAGTCTCTTCTT
GGATATGTTCCGCTTTGACAATTCCATAAACACAACAGCATCTAAAAAAT
ATGGCAGGGTTACGACTTTATTCACTGTGGAATTAATCCTCTTTATTTGA
TTGTCTGCCCCCAGTTCAGCTGGAGTAGGGAAGCCCTAATTTGAGAGAAG
TATCAGAACTATCATCCTCAGGAGGAGGGCCACTGCTGCAGCTGCAGACG
TTGTTTACAGATTCTGATGACATGCCTTCTTCTTGGATAGCAATATCTGA
ATCCACTAAAACAACTCTTTTTCCCTTGCACGAGGAGGCCACCTTCTGCT
TTAGATTCTTGTTCTCCTCCAGCAGCTTAGCTCCCTTCCTTTCAAGTGTA
GAGATCTCATTCATAATCCGGTCACCCTTTGTCTGGAGCACACGGCTAAG
TCCCTGTTCAAGCATTGTTTCAAGGTGCTGGAGTTCCTCAATAGTCAATC
CATGAAGATCCTCTCCTCTCATCTGCCTTAGTTGACGGCTCTTATCAGCA
ATTTCCCTGCTCAAACTGAGATACTTGCTATTCTCCAACTGCAGTTCAAG
AGATGGATGATTCAATTTGCTGATGTTACTTGAATGCATGTTGTACCTTG
CAATTATGTCCTTCATGCTGGAGCTGGAG
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