CX671579

Overview
NameCX671579
Unique NameCX671579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671579_ssr8 microsatellite CX671579_ssr8:8..19. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CX671579 vs. ExPASy Swiss-Prot
Match: PANK2_ARATH (Pantothenate kinase 2 OS=Arabidopsis thaliana GN=At4g32180 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.209e-29
Identity = 63/72 (87.50%), Postives = 66/72 (91.67%), Query Frame = 3 
Query:  153 QISWMEKFVLKGTEITAPVPMAPSGTTGLGGFEVPLSKGSTLRSDASALNVGVLHLVPTLEVFPLLADPKMY 368
            +ISWMEKFV +GTEITAPVPM PS TTGLGGFEVP S+GS LRSDASALNVGVLHLVPTLEVFPLLADPK Y
Sbjct:  432 KISWMEKFVRRGTEITAPVPMTPSKTTGLGGFEVPSSRGSALRSDASALNVGVLHLVPTLEVFPLLADPKTY 503
The following BLAST results are available for this feature:
BLAST of CX671579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PANK2_ARATH3.209e-2987.50Pantothenate kinase 2 OS=Arabidopsis thaliana GN=A... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_11H09_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11H09-P17-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671579 ID=CX671579; Name=CX671579; organism=Citrus sinensis; type=EST; length=847bp
TTAGAACATTATTATTATTTTTTAATTATATAGTCAACCACCATTGCTTT
TAGGAATTTAATTAAGCATCGACTGTCCAAACGTATGCAGTAATGTCCTT
TTCAACTTTATTCTTATTGGATCCTCGGTTGATATTTATCTTGGTTCAAA
TGCAGATTTCGTGGATGGAAAAATTTGTTCTGAAGGGAACTGAGATTACT
GCTCCTGTACCTATGGCTCCATCTGGAACCACTGGACTTGGAGGCTTTGA
AGTTCCTCTATCCAAAGGCAGCACTTTGCGTTCTGATGCAAGTGCGTTAA
ACGTTGGAGTTCTTCATCTAGTACCCACTTTGGAAGTGTTTCCTCTGCTA
GCCGACCCCAAAATGTATGCAAAATTGCTTATTGGTTTTTTGTTCATTAC
TCGAACTAACTTTTCTTTGCAACAACCTTGTTGAACACTTGTACTCATGA
ATTGTCTGATTAAATATTGGATAGATCTGGGAGTCTGGGTTATCAAAAAA
ATATTGGATGGATCTGATTCACAGTTTTCGTGGTTCTCTCACGTTTAGTT
ACGCATTCGTTTTCATTTCTGATTTTTAAGTGGTTTTGCTTATTATGTCA
CTGATGGGTTTATATTTTGCATCAGTCCCTTTGTTGTAATTCAATTTTCA
GCAAATGATATTTTGTGCGGAAATTCAATAGATACAGGCTTTACTTGATT
TCCAATTAATCTATTGGTTTTTCAGTTAACGCAGTTGCTGATGCATTCTA
CATAATATTTATTTGATTTCTATGTTTATTTTAATGTGCCTCCAGGTATG
AGCCTAACACCATTGATCTCGCAGATCACAGCGAGTTAGAGTGAGTT
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