CX671564

Overview
NameCX671564
Unique NameCX671564
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671564_ssr379 microsatellite CX671564_ssr379:379..393. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CX671564 vs. ExPASy Swiss-Prot
Match: Y1934_ARATH (Uncharacterized protein At1g09340, chloroplastic OS=Arabidopsis thaliana GN=At1g09340 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.160e-26
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = -3 
Query:  187 QHFFASVEKAKHVLGWKPEFDLVEGLADSYNLDFGRGTYRKEADFSTDDMILGKKLVLQ 363
            QHFFASVEKAKHVLGWKPEFDLVEGL DSYNLDFGRGT+RKEADF+TDDMIL KKLVLQ
Sbjct:  320 QHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFTTDDMILSKKLVLQ 378
The following BLAST results are available for this feature:
BLAST of CX671564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1934_ARATH7.160e-2693.22Uncharacterized protein At1g09340, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_11G11_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11G11-N21-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671564 ID=CX671564; Name=CX671564; organism=Citrus sinensis; type=EST; length=824bp
GAAAATGACTTGCATTGATTTATTAATTCTCATACAAGGTTTACGATACA
TGTGGAACTCAAATATTTTCAGTTGAAACCATAAACCACGAACAGTAGGC
AGCCTAGAGCTTGGATGAAAATGATCAACGAAGTAACTGTAAGGAGGAAA
AAAAAAAACCCTAGGAAATGTGTGAATGAACTAGGCCTGAAGAACGAGTT
TCTTGCCGAGAATCATGTCATCTGTGGAGAAATCAGCCTCTTTCCTGTAT
GTACCCCTGCCAAAGTCTAGGTTGTATGAGTCTGCAAGACCTTCCACCAG
GTCAAACTCAGGTTTCCATCCGAGCACATGCTTTGCCTTCTCAACTGACG
CAAAGAAATGCTGCATGCATTACACACAAAAATAAAATAAAATAAAAAGC
TACCAAAAATTTTCCTTTGATTTTGGCAAGGTGATAACAATGATATTGGC
TGAAAAACCATCATGCTAAAATAAATGGCAAATTTGGAAACAACATTTCT
CCTCCATTTCCGGGTAACCTTTGACCATGTTGATGAATAAGAAAAAGATT
ACCATGAAAAGTTCCTAGTTTCTACTTTCTAGATGCTGATCTCACCTTAA
AGAATTTTCTTCTTGATAGGAGCCTTATCCTTTGAATATCATTTTCAGAG
GAGTATTGAATAATGCTATTTTTCAAGGTCTCCAAGCTTTTTGGATTATA
TGCAAATATAGAATGCCAGCATCGATCTCTTAACCATGTTGACTGAAAAT
GCAGTTTTTAAGCTTGCAATTACCTGGTCCCTGAATGGAAAGCCTTCTTT
TTACCAAGTCAAACTCTTTGGGGT
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