CX671562

Overview
NameCX671562
Unique NameCX671562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5600 contig Csv1_Contig5600:48..824. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX671562 vs. ExPASy Swiss-Prot
Match: BETL1_ARATH (Bet1-like protein At4g14600 OS=Arabidopsis thaliana GN=At4g14600 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.877e-42
Identity = 86/137 (62.77%), Postives = 104/137 (75.91%), Query Frame = 2 
Query:   53 MASSSHRXXXXXXXXXXXXXXRSREGLSTRPVAGSDEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVXXXXXXXXXXYMWSKMFRR 463
            MAS+ HR              RSREGLSTR  AGS+EIQLRIDP+++DLDDEITGL  QV+QL+N+AQEI SEA FQ+DFLD+LQMTLI+AQAGVKNN+R+LN SI++ G+NHIMHVV          Y+WSKMF+R
Sbjct:    1 MASNPHRSGAGGSLYGGAAPYRSREGLSTRNAAGSEEIQLRIDPMHSDLDDEITGLHGQVRQLKNIAQEIGSEAKFQRDFLDELQMTLIRAQAGVKNNIRKLNMSIIRSGNNHIMHVVLFALLVFFVLYIWSKMFKR 137
[Close]
BLAST of CX671562 vs. ExPASy Swiss-Prot
Match: BETL2_ARATH (Bet1-like protein At1g29060 OS=Arabidopsis thaliana GN=At1g29060 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.977e-39
Identity = 79/116 (68.10%), Postives = 96/116 (82.76%), Query Frame = 2 
Query:  116 RSREGLSTRPVAGSDEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVXXXXXXXXXXYMWSKMFRR 463
            RSREGLSTR  +GS+EIQLRIDP+++DLDDEI GL  QV+QL+N+AQEI SEA  Q+DFLD+LQMTLI+AQAGVKNN+R+LN SI++ G+NHIMHVV          YMWSKMF+R
Sbjct:   19 RSREGLSTRNASGSEEIQLRIDPMHSDLDDEILGLHGQVRQLKNIAQEIGSEAKSQRDFLDELQMTLIRAQAGVKNNIRKLNLSIIRSGNNHIMHVVLFALLLFFILYMWSKMFKR 134
The following BLAST results are available for this feature:
BLAST of CX671562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BETL1_ARATH2.877e-4262.77Bet1-like protein At4g14600 OS=Arabidopsis thalian... [more]
BETL2_ARATH2.977e-3968.10Bet1-like protein At1g29060 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_11G10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11G10-N19-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671562 ID=CX671562; Name=CX671562; organism=Citrus sinensis; type=EST; length=777bp
CCTTGTCAAATTTTCGATCGATAAAGTCTTATTCGGCTTGGTCAATTTCA
TAATGGCTTCCAGTTCTCACAGAGGCGGTGCCGGCGGGCCATTTTACGGG
GGCGCCGCTCCTTACAGATCAAGAGAGGGCCTCAGCACTAGACCGGTCGC
CGGTTCAGATGAAATACAGTTGCGGATCGATCCTGTGAATGCTGACCTGG
ACGATGAGATCACTGGTCTCCGTAGCCAAGTTAAGCAGTTGAGAAATGTT
GCTCAAGAGATACATTCAGAAGCATCATTTCAGAAGGATTTTTTAGATCA
ATTGCAAATGACTCTGATCAAAGCTCAAGCAGGTGTGAAGAACAACATGA
GGAGATTAAACAAGAGCATTGTCAAACATGGTTCTAACCATATAATGCAT
GTGGTTCTTTTTGCTCTATTTCTTTTCTTCATTCTCTACATGTGGTCCAA
AATGTTCAGACGATGAAGTTAGAATGGCTGGTGCGCACCATGCTAAGAAT
TCGATGACTGAAGGTGAAAGCTCCCTGGTTCTGCACAAGGTTTCTAGACT
GAAGTGCTAGCACTTCATTTCCTGATGATGTTGCAGATGTAATGACTTTC
TGAAATTGTTTGTTTTAGGTCTTTCATGTATCATTACAAGTTAGCTTCTG
TGTGAATGATGGGATATCAGTGGGTAAAAGTATTCGCTAGGTTTCGAAGA
ATTATCTCTATAATAGAGAGAACTAAATCTTATTTCCATTTAAGCTTGTA
AATTTTTGCACTTACTATCTTTGTGAA
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