CX671561

Overview
NameCX671561
Unique NameCX671561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5600 contig Csv1_Contig5600:45..881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX671561 vs. ExPASy Swiss-Prot
Match: BETL1_ARATH (Bet1-like protein At4g14600 OS=Arabidopsis thaliana GN=At4g14600 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.280e-42
Identity = 88/137 (64.23%), Postives = 106/137 (77.37%), Query Frame = -2 
Query:  372 MASSSHRXXXXXXXXXXXXXYRSREGLSTRPVAGSDEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVXXXXXXXXXLYMWSKMFRR 782
            MAS+ HR             YRSREGLSTR  AGS+EIQLRIDP+++DLDDEITGL  QV+QL+N+AQEI SEA FQ+DFLD+LQMTLI+AQAGVKNN+R+LN SI++ G+NHIMHVV         LY+WSKMF+R
Sbjct:    1 MASNPHRSGAGGSLYGGAAPYRSREGLSTRNAAGSEEIQLRIDPMHSDLDDEITGLHGQVRQLKNIAQEIGSEAKFQRDFLDELQMTLIRAQAGVKNNIRKLNMSIIRSGNNHIMHVVLFALLVFFVLYIWSKMFKR 137
[Close]
BLAST of CX671561 vs. ExPASy Swiss-Prot
Match: BETL2_ARATH (Bet1-like protein At1g29060 OS=Arabidopsis thaliana GN=At1g29060 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.394e-39
Identity = 80/116 (68.97%), Postives = 97/116 (83.62%), Query Frame = -2 
Query:  372 RSREGLSTRPVAGSDEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVXXXXXXXXXLYMWSKMFRR 719
            RSREGLSTR  +GS+EIQLRIDP+++DLDDEI GL  QV+QL+N+AQEI SEA  Q+DFLD+LQMTLI+AQAGVKNN+R+LN SI++ G+NHIMHVV         LYMWSKMF+R
Sbjct:   19 RSREGLSTRNASGSEEIQLRIDPMHSDLDDEILGLHGQVRQLKNIAQEIGSEAKSQRDFLDELQMTLIRAQAGVKNNIRKLNLSIIRSGNNHIMHVVLFALLLFFILYMWSKMFKR 134
The following BLAST results are available for this feature:
BLAST of CX671561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BETL1_ARATH3.280e-4264.23Bet1-like protein At4g14600 OS=Arabidopsis thalian... [more]
BETL2_ARATH3.394e-3968.97Bet1-like protein At1g29060 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_11G10_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11G10-N19-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671561 ID=CX671561; Name=CX671561; organism=Citrus sinensis; type=EST; length=837bp
CTTTTTTTTTAGGAGCATGCGTATGCTAGTACGTCATTCAATTCACTCAA
TAACCATTTCACAAAGATAGTAAGTGCAAAAATTTACAAGCTTAAATGGA
AATAAGATTTAGTTCTCTCTATTATAGAGATAATTCTTCGAAACCTAGCG
AATACTTTTACCCACTGATATCCCATCATTCACACAGAAGCTAACTTGTA
ATGATACATGAAAGACCTAAAACAAACAATTTCAGAAAGTCATTACATCT
GCAACATCATCAGGAAATGAAGTGCTAGCACTTCAGTCTAGAAACCTTGT
GCAGAACCAGGGAGCTTTCACCTTCAGTCATCGAATTCTTAGCATGGTGC
GCACCAGCCATTCTAACTTCATCGTCTGAACATTTTGGACCACATGTAGA
GAATGAAGAAAAGAAATAGAGCAAAAAGAACCACATGCATTATATGGTTA
GAACCATGTTTGACAATGCTCTTGTTTAATCTCCTCATGTTGTTCTTCAC
ACCTGCTTGAGCTTTGATCAGAGTCATTTGCAATTGATCTAAAAAATCCT
TCTGAAATGATGCTTCTGAATGTATCTCTTGAGCAACATTTCTCAACTGC
TTAACTTGGCTACGGAGACCAGTGATCTCATCGTCCAGGTCAGCATTCAC
AGGATCGATCCGCAACTGTATTTCATCTGAACCGGCGACCGGTCTAGTGC
TGAGGCCCTCTCTTGATCTGTAAGGAGCGGCGCCCCCGTAAAATGGCCCG
CCGGCACCGCCTCTGTGAGAACTGGAAGCCATTATGAAATTGACCAAGCC
GAATAAGACTTTATCGATCGAAAATTTGACAAGGCCT
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