CX671558

Overview
NameCX671558
Unique NameCX671558
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671558_ssr467 microsatellite CX671558_ssr467:467..476. BLAST: Citrus ESTs to Prunus persica proteins V1
CX671558_ssr484 microsatellite CX671558_ssr484:484..497. BLAST: Citrus ESTs to Prunus persica proteins V1
CX671558_ssr500 microsatellite CX671558_ssr500:500..509. BLAST: Citrus ESTs to Prunus persica proteins V1
CX671558_ssr269 microsatellite CX671558_ssr269:269..280. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5064 contig Csv1_Contig5064:1..760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671558 vs. ExPASy Swiss-Prot
Match: AB11G_ARATH (ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.569e-21
Identity = 46/80 (57.50%), Postives = 60/80 (75.00%), Query Frame = 1
Query:  520 FERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACMLLVESLMMIVASLVPNYL 759
            F+RERLNGHYG  AFV  NT SA P+L +I+ I G I Y + GLH G+ H+ +FVL L+A + +VESLMM +AS+VPN+L
Sbjct:  462 FQRERLNGHYGVAAFVIANTLSATPFLIMITFISGTICYFMVGLHPGFTHYLFFVLCLYASVTVVESLMMAIASIVPNFL 541          

HSP 2 Score: 53.5286 bits (127), Expect = 2.580e-15
Identity = 25/63 (39.68%), Postives = 33/63 (52.38%), Query Frame = 1
Query:   22 LEKKSTHADFLTQCIVLTSRSFVNMYRDLGYYWFRXXXXXXXXXXXATVFSNLGTDNNSIQVR 210
            L+   + A FL Q   LT RSF+NM RD GYYW R            T++ N+GT  ++I  R
Sbjct:  371 LDSGGSQASFLLQTYTLTKRSFINMSRDFGYYWLRLLIYILVTVCIGTIYLNVGTSYSAILAR 433          

HSP 3 Score: 49.2914 bits (116), Expect = 2.580e-15
Identity = 23/30 (76.67%), Postives = 25/30 (83.33%), Query Frame = 2
Query:  287 ARGSLLMFVASFLTFMTIGGFPSFVEDMKV 376
            ARGS   FV  F+TFM+IGGFPSFVEDMKV
Sbjct:  432 ARGSCASFVFGFVTFMSIGGFPSFVEDMKV 461          
BLAST of CX671558 vs. ExPASy Swiss-Prot
Match: AB15G_ARATH (ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.992e-15
Identity = 35/80 (43.75%), Postives = 55/80 (68.75%), Query Frame = 1
Query:  520 FERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACMLLVESLMMIVASLVPNYL 759
            F +ERL+G+YG + ++  N  S+ P+L  IS+I G I Y+L     G+ H+ +F L +F  + ++ESLMM+VAS+VPN+L
Sbjct:  440 FYKERLSGYYGVSVYILSNYISSFPFLVAISVITGTITYNLVKFRPGFSHYAFFCLNIFFSVSVIESLMMVVASVVPNFL 519          

HSP 2 Score: 47.7506 bits (112), Expect = 1.871e-11
Identity = 23/62 (37.10%), Postives = 33/62 (53.23%), Query Frame = 1
Query:   28 KKSTHADFLTQCIVLTSRSFVNMYRDLGYYWFRXXXXXXXXXXXATVFSNLGTDNNSIQVRI 213
            +K + A +  Q   LT+RSF+NM RD+GYYW R            T+F ++G    SI  R+
Sbjct:  351 RKGSEATWWKQLRTLTARSFINMCRDVGYYWTRIISYIVVSISVGTIFYDVGYSYTSILARV 412          

HSP 3 Score: 41.9726 bits (97), Expect = 1.871e-11
Identity = 19/30 (63.33%), Postives = 24/30 (80.00%), Query Frame = 2
Query:  287 ARGSLLMFVASFLTFMTIGGFPSFVEDMKV 376
            AR S   F+  F+TFM+IGGFPSF+E+MKV
Sbjct:  410 ARVSCGGFITGFMTFMSIGGFPSFLEEMKV 439          
BLAST of CX671558 vs. ExPASy Swiss-Prot
Match: AB12G_ARATH (ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.897e-14
Identity = 35/80 (43.75%), Postives = 55/80 (68.75%), Query Frame = 1
Query:  520 FERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACMLLVESLMMIVASLVPNYL 759
            F +ERL+G+YG + ++  N  S+ P+L  I+LI G+I Y++     G  H+ +F L +F  + ++ESLMM+VASLVPN+L
Sbjct:  441 FYKERLSGYYGVSVYIISNYVSSFPFLVAIALITGSITYNMVKFRPGVSHWAFFCLNIFFSVSVIESLMMVVASLVPNFL 520          

HSP 2 Score: 48.9062 bits (115), Expect = 5.075e-12
Identity = 24/62 (38.71%), Postives = 32/62 (51.61%), Query Frame = 1
Query:   28 KKSTHADFLTQCIVLTSRSFVNMYRDLGYYWFRXXXXXXXXXXXATVFSNLGTDNNSIQVRI 213
            +K + A +  Q   LT RSFVNM RD+GYYW R            T+F ++G    SI  R+
Sbjct:  352 RKGSEATWFKQLRTLTKRSFVNMCRDIGYYWSRIVIYIVVSFCVGTIFYDVGHSYTSILARV 413          

HSP 3 Score: 42.743 bits (99), Expect = 5.075e-12
Identity = 19/30 (63.33%), Postives = 24/30 (80.00%), Query Frame = 2
Query:  287 ARGSLLMFVASFLTFMTIGGFPSFVEDMKV 376
            AR S   F+  F+TFM+IGGFPSF+E+MKV
Sbjct:  411 ARVSCGGFITGFMTFMSIGGFPSFIEEMKV 440          
BLAST of CX671558 vs. ExPASy Swiss-Prot
Match: AB13G_ARATH (ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.963e-11
Identity = 34/80 (42.50%), Postives = 46/80 (57.50%), Query Frame = 1
Query:  520 FERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACMLLVESLMMIVASLVPNYL 759
            F RERLNGHYG   +   N  S+LP++ L+ L   +I   +     G  HF Y  L L   +  VES MM++AS+VPN+L
Sbjct:  435 FSRERLNGHYGVAVYTVSNLLSSLPFIILMCLSTSSITIYMVRFQSGGSHFFYNCLDLICAITTVESCMMMIASVVPNFL 514          

HSP 2 Score: 49.2914 bits (116), Expect = 3.154e-11
Identity = 21/58 (36.21%), Postives = 33/58 (56.90%), Query Frame = 1
Query:   28 KKSTHADFLTQCIVLTSRSFVNMYRDLGYYWFRXXXXXXXXXXXATVFSNLGTDNNSI 201
            KK +  ++  Q  +LT RSF+NM RDLGYYW R            ++F N+G ++ ++
Sbjct:  346 KKGSQTNWWKQLRILTQRSFINMSRDLGYYWMRIAVYIVLSICVGSIFFNVGRNHTNV 403          

HSP 3 Score: 39.6614 bits (91), Expect = 3.154e-11
Identity = 16/23 (69.57%), Postives = 21/23 (91.30%), Query Frame = 2
Query:  308 FVASFLTFMTIGGFPSFVEDMKV 376
            F+A F+TFM+IGGF SF+E+MKV
Sbjct:  412 FMAGFMTFMSIGGFQSFIEEMKV 434          
The following BLAST results are available for this feature:
BLAST of CX671558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
AB11G_ARATH3.569e-2157.50ABC transporter G family member 11 OS=Arabidopsis ... [more]
AB15G_ARATH4.992e-1543.75ABC transporter G family member 15 OS=Arabidopsis ... [more]
AB12G_ARATH1.897e-1443.75ABC transporter G family member 12 OS=Arabidopsis ... [more]
AB13G_ARATH1.963e-1142.50ABC transporter G family member 13 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_11G08_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11G08-N15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671558 ID=CX671558; Name=CX671558; organism=Citrus sinensis; type=EST; length=760bp
GCGTTACAGGATTCTGGAGCTCTGGAGAAAAAGAGTACCCATGCTGACTT
TCTCACTCAATGCATAGTTCTCACAAGCAGATCTTTTGTGAACATGTATC
GTGATCTAGGTTACTACTGGTTTCGCCTAGGTGTTTATGTCTTACTGGGA
GTAGGTCTTGCCACTGTATTTAGCAATCTTGGGACTGACAATAATTCAAT
TCAGGTGAGAATAAAATCTATTTTTATTAATCACTGTGAATTACCAGAGA
TTCATTATTTTGTTCTGTTTAATTAATTAATTTCAGGCAAGAGGTTCGCT
GCTCATGTTTGTAGCTTCATTTCTAACCTTCATGACCATTGGTGGATTCC
CTTCTTTTGTTGAGGACATGAAGGTACGTAAGCATACCCATACTAGAATT
TTGTATATCATTTTTTGTTAAAAGCACTTAATTTTTCTCTTACTTTTCAT
CTGACACTAAATTTGCGTGTGTGTGTATGTATATGTGTGTGTGTGTGTTT
GTGTGTGTGTATAAAGGTATTTGAGCGAGAGAGACTAAACGGGCACTATG
GTGCTACTGCGTTTGTGTTTGGCAACACGTTTTCTGCGCTGCCATACTTA
GCTCTCATTTCATTGATTCCTGGAGCGATAGTGTATGACCTTCCGGGACT
TCACAAAGGATATCAACACTTCACATACTTTGTTTTGTTATTGTTTGCTT
GCATGTTGCTCGTTGAGAGCCTAATGATGATCGTTGCAAGCTTGGTGCCC
AACTATCTGA
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