CX671548

Overview
NameCX671548
Unique NameCX671548
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11701 contig Csv1_Contig11701:898..1606. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671548 vs. ExPASy Swiss-Prot
Match: SDE3_ARATH (Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.797e-24
Identity = 63/184 (34.24%), Postives = 101/184 (54.89%), Query Frame = -2
Query:  127 EAVLEIYKRSSKCRILVCAPINRTGDVLMRSLK----KKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECFQLPSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLVDASSATEPETMIALTNLANENTTVILTGAPNNRTSWVRSDIARKNGLRVSHFERLHATKTYSNFNPMFIT 666
            EA++++Y      R+LVCAP N   D ++  L      +I  +++FR NAA R  + +  +I+  C ++    F+ P L+ L R++++ ST+ S+  L+ EG+  GHF+HI L +A  A+EPE MIA++NL    T V+L G P      + S  A   GL  S+ ERL     Y   +  ++T
Sbjct:  433 EAIVQLYTTQRNARVLVCAPSNSAADHILEKLLCLEGVRIKDNEIFRLNAATRSYEEIKPEIIRFCFFDE-LIFKCPPLKALTRYKLVVSTYMSASLLNAEGVNRGHFTHILLDEAGQASEPENMIAVSNLCLTETVVVLAGDPRQLGPVIYSRDAESLGLGKSYLERLFECDYYCEGDENYVT 615          
BLAST of CX671548 vs. ExPASy Swiss-Prot
Match: MOV10_BOVIN (Putative helicase MOV-10 OS=Bos taurus GN=MOV10 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.172e-21
Identity = 64/192 (33.33%), Postives = 100/192 (52.08%), Query Frame = -2
Query:  127 EAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGEC-FQLPSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLVDASSATEPETMIALTNLA------NENTTVILTGAPNNRTSWVRSDIARKNGLRVSHFERLHA-----TKTYSNFNPMFIT 666
            EA+ ++ K   K  IL CAP N   D+L + L+  +P S ++R  A  R++  VP DI P C ++  +  F  PS ++L  +RV+ +T  ++ RL +   P  HF+HIF+ +A  A EPE+++A+  L       N    ++L G P      +R  + +K+GL  S  ERL        K    +NP FIT
Sbjct:  536 EAIKQVVKHLPKAHILACAPSNSGADLLCQRLRVHLPSS-IYRLLAPSRDIHLVPEDIKPCCNWDAKKGDFVFPSKKKLQEYRVLITTLITASRLVSAQFPIDHFTHIFIDEAGHAMEPESLVAIAGLMEVKEADNPGGQLVLAGDPRQLGPVLRCPLTQKHGLGYSLLERLLTFNALYKKGPDGYNPQFIT 726          
BLAST of CX671548 vs. ExPASy Swiss-Prot
Match: MOV10_HUMAN (Putative helicase MOV-10 OS=Homo sapiens GN=MOV10 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.507e-20
Identity = 63/193 (32.64%), Postives = 101/193 (52.33%), Query Frame = -2
Query:  127 EAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEG--GECFQLPSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLVDASSATEPETMIALTNLANENTT------VILTGAPNNRTSWVRSDIARKNGLRVSHFERLHA-----TKTYSNFNPMFIT 666
            EA+ ++ K   K  IL CAP N   D+L + L+  +P S ++R  A  R++  VP DI P C ++   GE +  P+ ++L  +RV+ +T  ++ RL +   P  HF+HIF+ +A    EPE+++A+  L     T      ++L G P      +RS + +K+GL  S  ERL        K    ++P FIT
Sbjct:  536 EAIKQVVKHLPKAHILACAPSNSGADLLCQRLRVHLPSS-IYRLLAPSRDIRMVPEDIKPCCNWDAKKGE-YVFPAKKKLQEYRVLITTLITAGRLVSAQFPIDHFTHIFIDEAGHCMEPESLVAIAGLMEVKETGDPGGQLVLAGDPRQLGPVLRSPLTQKHGLGYSLLERLLTYNSLYKKGPDGYDPQFIT 726          
BLAST of CX671548 vs. ExPASy Swiss-Prot
Match: MOV10_CHICK (Putative helicase MOV-10 OS=Gallus gallus GN=MOV10 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.507e-20
Identity = 60/194 (30.93%), Postives = 97/194 (50.00%), Query Frame = -2
Query:  127 EAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGE-CFQLPSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLVDASSATEPETMIALTNL-------ANEN-TTVILTGAPNNRTSWVRSDIARKNGLRVSHFERLHA-----TKTYSNFNPMFIT 666
            EA+ +++      RIL CAP N   D+L + L   I    ++R  A+      VP D+ P C ++  E C+  PS + L  +R++ +T  ++ RL +   P G+FSH+F+ +   A EPE+++A+  L        N N   ++L G P       RS +A ++GL  S  ERL        K+   +NP F+T
Sbjct:  528 EAIKQVWSCFKDARILACAPSNSAADLLCQRLLTNIAPRYIYRIMASSANYKDVPADVRPCCNWDDSEKCYVYPSKKLLKPYRILITTLVTAGRLVSANFPPGYFSHVFIDECGHAVEPESVVAIAGLLTTMDPDTNPNGGQLVLAGDPQQLGPVPRSPLAAQHGLGTSLLERLMLHNALYAKSDEGYNPQFVT 721          
BLAST of CX671548 vs. ExPASy Swiss-Prot
Match: MOV10_MOUSE (Putative helicase MOV-10 OS=Mus musculus GN=Mov10 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.580e-20
Identity = 64/193 (33.16%), Postives = 102/193 (52.85%), Query Frame = -2
Query:  127 EAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEG--GECFQLPSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLVDASSATEPETMIALTNL------ANENTTVILTGAPNNRTSWVRSDIARKNGLRVSHFERLHA-----TKTYSNFNPMFIT 666
            EA+ ++ K   K  IL CAP N   D+L + L+  +P S ++R  A  R++  VP DI   C ++   GE +  P+ + L ++RV+ +T  ++ RL +   P  HF+HIF+ +A    EPE+++A+  L       N    ++L G P      +RS +A K+GL  S  ERL A      K  + ++P FIT
Sbjct:  537 EAIKQVVKHLPKAHILACAPSNSGADLLCQRLRVHLPSS-IYRLLAPSRDIRMVPEDIKTCCNWDAKKGE-YVYPAKKHLQQYRVLITTLITASRLVSAQFPIDHFTHIFIDEAGHCMEPESLVAIAGLMDVKETGNPGGQLVLAGDPRQLGPVLRSPLALKHGLGYSLLERLLAYNSLYKKGPNGYDPQFIT 727          
BLAST of CX671548 vs. ExPASy Swiss-Prot
Match: M10L1_MOUSE (Putative helicase Mov10l1 OS=Mus musculus GN=Mov10l1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.282e-18
Identity = 63/192 (32.81%), Postives = 98/192 (51.04%), Query Frame = -2
Query:  127 EAVLEIYKRSSKCRILVCAPINRTGD-VLMRSLKKKIPK-SDMFRANAAFREVDGVPVDILPLCLYEGGECFQLPSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLVDASSATEPETMIALTNLANENTTVILTGAPNNRTSWVRSDIARKNGLRVSHFERLHATKTY----------SNFNPMFIT 666
            EAVL+++      RILVCAP N   D V +R  + K+PK + M R NA  R  + +   I P C    GE      +    RFR+I +T +S+   +  G+  G+F+H+F+ +A  A+EPE +I L  +++ N  ++L G P      ++S +A   GL VS  ERL +   Y            +NP+ +T
Sbjct:  784 EAVLQVHYALPDSRILVCAPSNSAADLVCLRLHESKVPKPAAMVRVNATCRFEETIIDAIKPYC--RDGE-----DIWRASRFRIIITTCSSAGLFYQIGVRVGYFTHVFVDEAGQASEPECLIPLGLISDINGQIVLAGDPMQLGPVIKSRLAMAYGLNVSMLERLMSRPAYLRDENAFGACGAYNPLLVT 968          
BLAST of CX671548 vs. ExPASy Swiss-Prot
Match: MV10A_DANRE (Putative helicase mov-10-A OS=Danio rerio GN=mov10a PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.779e-17
Identity = 57/168 (33.93%), Postives = 87/168 (51.79%), Query Frame = -2
Query:  172 EAVLEIYKRSSKCRILVCAPINRTGDVLMRSL--KKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECFQLPSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLVDASSATEPETMIALTNLANENT-TVILTGAPNNRTSWVRSDIARKNGLRVSHFERL 666
            EA+ ++ K +   RIL CAP N   D L   L   + +   +++R  A+ R    +P  +L       GE    P  ++LM ++++  T  ++ RL + G P GHFSHIF+ +A  A EPE +I++  L N  T  ++L G P      +RS  A K GL +S  ERL
Sbjct:  562 EAIKQVEKNTGGARILACAPSNSAADQLGEKLITSQHVDARNIYRIYASSRNPKEIP-KVLENNSNVEGENIIFPCKEDLMPYKIVVCTLVTAGRLVSGGFPVGHFSHIFVDEAGHAVEPEIVISVAGLLNAETGQLVLAGDPKQLGPILRSPFAIKYGLGLSLLERL 728          
BLAST of CX671548 vs. ExPASy Swiss-Prot
Match: M10L1_HUMAN (Putative helicase Mov10l1 OS=Homo sapiens GN=MOV10L1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.779e-17
Identity = 61/192 (31.77%), Postives = 95/192 (49.48%), Query Frame = -2
Query:  127 EAVLEIYKRSSKCRILVCAPINRTGDVLMRSL--KKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECFQLPSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLVDASSATEPETMIALTNLANENTTVILTGAPNNRTSWVRSDIARKNGLRVSHFERLHATKTYSN----------FNPMFIT 666
            EAVL+++      RILVCAP N   D++   L   K +  + M R NA  R  + V   + P C    GE      + +  RFR+I +T +SS   +  G+  GHF+H+F+ +A  A+EPE +I L  +++ +  ++L G P      ++S +A   GL VS  ERL +   Y             NP+ +T
Sbjct:  782 EAVLQVHFALPDSRILVCAPSNSAADLVCLRLHESKVLQPATMVRVNATCRFEEIVIDAVKPYC--RDGE-----DIWKASRFRIIITTCSSSGLFYQIGVRVGHFTHVFVDEAGQASEPECLIPLGLMSDISGQIVLAGDPMQLGPVIKSRLAMAYGLNVSFLERLMSRPAYQRDENAFGACGAHNPLLVT 966          
BLAST of CX671548 vs. ExPASy Swiss-Prot
Match: ARMI_DROME (Probable RNA helicase armi OS=Drosophila melanogaster GN=armi PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 60/208 (28.85%), Postives = 92/208 (44.23%), Query Frame = -2
Query:  127 EAVLEIYKRSSKCRILVCAPINRTGDVLMRSL--KKKIPKSDMFRANAAFR-EVDGVPVDILPLCLYEG----GECFQLPSLQE-----------LMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLVDASSATEPETMIALTNLANENTTVILTGAPNNRTSWVRSDIARKNGLRVSHFERLHATKTY----------SNFNPMFIT 666
            E +L++ +     RILV  P N + D++ + L   K + + D  R  +  + E D +P +I+  C        G C     + E           +   R+  ST T+       G PAGHF+H+   +A   TEPETM+ +  L  + + V+L+G P    S V S IA K G  +S  ERL     Y          S +NP+ +T
Sbjct:  821 ETLLQLVRNLPGARILVGTPSNSSADLVTKRLIDSKALLQGDFIRLVSYNQVEKDLIPPEIMSYCATSDVGAVGSCEDKMMVTESGLKLRCQAKFIGTHRITISTCTTLGNFLQLGFPAGHFTHVLFDEAGQCTEPETMVPIVMLTKKRSQVVLSGDPRQLQSIVTSRIASKMGFSISFLERLLERSPYRKDLQRFPESSGYNPLVLT 1028          
BLAST of CX671548 vs. ExPASy Swiss-Prot
Match: MV10B_DANRE (Putative helicase mov-10-B OS=Danio rerio GN=mov10b PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 51/168 (30.36%), Postives = 81/168 (48.21%), Query Frame = -2
Query:  172 EAVLEIYKRSSKCRILVCAPINRTGDVLMRSL--KKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECFQLPSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLVDASSATEPETMIALTNLAN-ENTTVILTGAPNNRTSWVRSDIARKNGLRVSHFERL 666
            EA+ ++ K      IL CAP N   D L   L   + +    ++R  A+ R    +P  +   C  +  E    P  ++LM ++++  T  ++ RL   G    HF+H F+ +A  A E ET+I++  L N E   ++L G P      +RS +A  +GL VS  ERL
Sbjct:  567 EAIKQVEKNIPDAYILACAPSNSAADQLCEKLITSEHVDAHKIYRLYASSRNQKDIPKILKDNCNVD-EEMIDFPCKEDLMSYKILICTLVTAGRLVTGGFSEDHFTHNFVDEAGHAVESETIISVAGLLNAEKGQLVLAGDPKQLGPILRSPLAINHGLDVSLLERL 733          
The following BLAST results are available for this feature:
BLAST of CX671548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SDE3_ARATH1.797e-2434.24Probable RNA helicase SDE3 OS=Arabidopsis thaliana... [more]
MOV10_BOVIN3.172e-2133.33Putative helicase MOV-10 OS=Bos taurus GN=MOV10 PE... [more]
MOV10_HUMAN3.507e-2032.64Putative helicase MOV-10 OS=Homo sapiens GN=MOV10 ... [more]
MOV10_CHICK3.507e-2030.93Putative helicase MOV-10 OS=Gallus gallus GN=MOV10... [more]
MOV10_MOUSE4.580e-2033.16Putative helicase MOV-10 OS=Mus musculus GN=Mov10 ... [more]
M10L1_MOUSE3.282e-1832.81Putative helicase Mov10l1 OS=Mus musculus GN=Mov10... [more]
MV10A_DANRE2.779e-1733.93Putative helicase mov-10-A OS=Danio rerio GN=mov10... [more]
M10L1_HUMAN2.779e-1731.77Putative helicase Mov10l1 OS=Homo sapiens GN=MOV10... [more]
ARMI_DROME1.686e-1428.85Probable RNA helicase armi OS=Drosophila melanogas... [more]
MV10B_DANRE1.093e-1330.36Putative helicase mov-10-B OS=Danio rerio GN=mov10... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11G02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11G02-N3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671548 ID=CX671548; Name=CX671548; organism=Citrus sinensis; type=EST; length=709bp
TTTTTTTTTCAAGAAATGTTCTTACATTCACACATTTACAACCAGGCACA
GTAGTAACAAATACATGGAAGTAAACTAAGTTATAACAGAGGTTATTGTT
ACTGCAGTACTCAAAGTTTACAGCATAGTAATGAACATTGGATTGAAATT
GCTATAGGTCTTGGTGGCATGAAGTCTTTCAAAATGTGACACCCTTAATC
CATTCTTCCTAGCAATATCGGAGCGGACCCAACTCGTACGGTTATTAGGA
GCACCGGTGAGTATCACGGTCGTGTTCTCATTAGCCAAATTTGTGAGAGC
TATCATTGTCTCTGGCTCAGTAGCAGATGAGGCATCAACAAGAAAAATGT
GACTAAAATGTCCAGCAGGTATGCCCTCGTTGTGGAGGCGAAAGCTGCTT
GTAAAAGTTGAGAATATTACCCTGAATCGCATCAATTCCTGAAGTGAAGG
CAATTGAAAACACTCCCCCCCTTCATAAAGGCACAAGGGGAGGATGTCAA
CTGGTACCCCATCTACCTCTCTGAATGCAGCGTTGGCTCGAAACATATCA
GACTTTGGAATCTTCTTCTTCAAACTTCTCATTAATACATCACCTGTTCT
ATTTATAGGAGCACAGACTAGAATTCGACACTTAGATGACCTCTTATAAA
TTTCAAGTACTGCTTCTCGAACAACCCATCCGGTTTTGGATAGATTGTCA
CTAGTTGCA
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