CX671546

Overview
NameCX671546
Unique NameCX671546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671546_ssr138 microsatellite CX671546_ssr138:138..149. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CX671546 vs. ExPASy Swiss-Prot
Match: CML22_ARATH (Probable calcium-binding protein CML22 OS=Arabidopsis thaliana GN=CML22 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.444e-48
Identity = 105/197 (53.30%), Postives = 132/197 (67.01%), Query Frame = 1 
Query:  295 MLCHC-GSQN--KYARLDAKLEKKMIEVKKSSSGHSNFKSIDSVIVRFPQFKDGLKNIKSVFEQYDKDSNGTIDRXXXXXXXXXXXXXXXXXXXXDLFKSCDIDGSEGIQFNEFIVLLCLIYLLTTP--XXXXXXXXXXPQL-KATFDAIVEVFLFLDKNGDGRLNKKDMVKTL-NESYPREKSPAHVTRTRFEEMD 864
            MLC C  S+N  KYA LDAKL +KM+E +    GH + KS+DS+I++FP+ ++GL+NI+SVFE YD D+NGTID                      L+  CD+DGS+GIQFNEFIVLLCLIYLL  P            P+L ++ FD IVEVFLFLDK+G G+LNK D++KTL NE YP E+SP+HVT  RFEEMD
Sbjct:    1 MLCCCVNSENNKKYAELDAKLARKMVESRSIYPGHRSLKSMDSIIMKFPKLREGLRNIRSVFESYDNDTNGTIDIEELKKCLEELKLSLSDEEVKGLYSWCDVDGSKGIQFNEFIVLLCLIYLLAKPSSESSTESREMGPKLVESIFDPIVEVFLFLDKDGKGKLNKADVIKTLNNEDYPLERSPSHVTNMRFEEMD 197
[Close]
BLAST of CX671546 vs. ExPASy Swiss-Prot
Match: CML21_ARATH (Probable calcium-binding protein CML21 OS=Arabidopsis thaliana GN=CML21 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.604e-31
Identity = 71/179 (39.66%), Postives = 112/179 (62.57%), Query Frame = 1 
Query:  337 DAKLEKKMIE-VKKSSSGHSNFKSIDSVIVRFPQFKDGLKNIKSVFEQYDKDSNGTIDRXXXXXXXXXXXXXXXXXXXXDLFKSCDIDGSEGIQFNEFIVLLCLIYLL--TTPXXXXXXXXXXPQLKATFDAIVEVFLFLDKNGDGRLNKKDMVKTLNESYPREKSPAHVTRTRFEEMD 864
            + KLE K+IE V++ +S  +  KS +S++++FP+  DGL+N K++F+++D+DSNG+ID                     DLFK+CDI+   GI F EFIVLLCL+YLL   +           P+L+ TF+ +V+ F+FLD+N DG +++++MV+ ++ES   E+S   +   RFEEMD
Sbjct:   18 ETKLEAKIIEAVQRRASRGTTMKSFNSIVLKFPKIDDGLRNCKAIFQEFDEDSNGSIDHTELKNCIRKLEISFDEEEINDLFKACDINEDMGITFTEFIVLLCLVYLLKDDSSTLQKKWTMGMPKLEPTFETLVDTFVFLDENKDGYVSREEMVRAIDES--GERSSGRIAMKRFEEMD 194
The following BLAST results are available for this feature:
BLAST of CX671546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CML22_ARATH1.444e-4853.30Probable calcium-binding protein CML22 OS=Arabidop... [more]
CML21_ARATH1.604e-3139.66Probable calcium-binding protein CML21 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_11G01_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11G01-N1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671546 ID=CX671546; Name=CX671546; organism=Citrus sinensis; type=EST; length=864bp
AAGAGTTGTAAGGATTCTGCTGATGCTTTCTTCGTCGTCAAAGGCCATAA
TGGCATCTCCACTTTTTAGAGAATCCCGTTTTGCTTAATCTTTACTCCCT
TTTTCTCCAGCTTTCCACTCGCTAAATTCTCTTTTCGTCCTTCCTTCCTC
ATTATGCCTTTTTTTTTGTAACGCTTTTCTTCTTTTGAAAGAACCACTTG
CCTCCTCTATCAAACCACATCTCCCCCAAAGATTTCAATGGGCACATCTC
ACCCTTGCCCTCCTCTGAAGTACTTATCCAACAAAGTTAGAGGCATGCTT
TGCCATTGCGGTTCACAAAACAAGTACGCAAGGTTGGATGCAAAGCTTGA
GAAGAAAATGATTGAAGTTAAGAAGAGTTCATCTGGACATAGCAATTTCA
AATCAATTGACAGTGTAATTGTACGATTCCCTCAGTTCAAAGACGGACTG
AAAAACATTAAAAGTGTCTTTGAGCAATATGACAAAGACTCCAATGGAAC
TATTGACCGTGAAGAACTTAAAAAATGCTTAGAGGAATTGCAACTCCATC
TTAAAGAGGAGGAAATTGAGGATTTGTTCAAATCTTGTGACATTGATGGG
AGTGAAGGCATACAATTCAACGAGTTTATTGTTCTTCTCTGTCTGATCTA
TCTACTAACAACGCCCTCTTCATCTTCCATGTCGAAGATGGGCTCACCTC
AGCTCAAGGCCACATTTGATGCTATAGTTGAAGTATTTTTGTTTCTTGAT
AAAAATGGTGACGGAAGGCTGAACAAGAAAGACATGGTCAAGACTTTGAA
TGAATCTTATCCTCGGGAGAAATCACCTGCACACGTAACCAGGACTCGAT
TCGAGGAAATGGAC
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