CX671545
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX16_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4 OS=Caenorhabditis elegans GN=mog-4 PE=2 SV=2) HSP 1 Score: 175.252 bits (443), Expect = 4.023e-43 Identity = 93/204 (45.59%), Postives = 130/204 (63.73%), Query Frame = 1 Query: 235 DSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGIN--TLKQMPGRKFP 840 ++ ++ I + RKSLP+ + +E V+++ +LII GETGSGKTTQLPQ+L+ AGFC GGK IG TQP +E G +LG +VGYSIRF+D TS T +KYMTDG+LLRE L +P L+ YSV+++DEAHERT+HTD+L GL+K + R + K S LD E ++ + + ++PGR+FP Sbjct: 349 EAEKKKMSIEETRKSLPVYAFRDAFIEAVKEHQVLIIEGETGSGKTTQLPQYLYEAGFCEGGKRIGCTQPRRVAAMSVAARVADEVGCKLGTQVGYSIRFEDCTSEKTVLKYMTDGMLLREFLNEPDLASYSVMMIDEAHERTLHTDILFGLVKDIARFRK---------DLKLLISSATLDAEKFSSFFDDAPIFRIPGRRFP 543
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX8_MOUSE (ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 1.294e-41 Identity = 95/192 (49.48%), Postives = 126/192 (65.62%), Query Frame = 1 Query: 151 QLSLEMPSVAEVSNSTHNPKLHSKPFFNDSSSRRQK----ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNAR 714 Q++ M + + N K H+ F + +S +K IL+QR+SLPI ++++LV+ V N ILI++GETGSGKTTQ+ Q+L AG+ GK IG TQP EE G LGQ VGY+IRF+D TS T IKYMTDG+LLRE L+DP L++Y++I++DEAHERT+HTDVL GLLKK R Sbjct: 544 QIAANMRGIGMMPNDIPEWKKHA--FGGNKASYGKKTQMSILEQRESLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGK-IGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKR 732
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX8_HUMAN (ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 1.294e-41 Identity = 95/192 (49.48%), Postives = 126/192 (65.62%), Query Frame = 1 Query: 151 QLSLEMPSVAEVSNSTHNPKLHSKPFFNDSSSRRQK----ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNAR 714 Q++ M + + N K H+ F + +S +K IL+QR+SLPI ++++LV+ V N ILI++GETGSGKTTQ+ Q+L AG+ GK IG TQP EE G LGQ VGY+IRF+D TS T IKYMTDG+LLRE L+DP L++Y++I++DEAHERT+HTDVL GLLKK R Sbjct: 520 QIAANMRGIGMMPNDIPEWKKHA--FGGNKASYGKKTQMSILEQRESLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGK-IGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKR 708
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX8_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2) HSP 1 Score: 165.622 bits (418), Expect = 3.188e-40 Identity = 87/164 (53.05%), Postives = 111/164 (67.68%), Query Frame = 1 Query: 223 PFFNDSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNAR 714 P F S + I +QR+SLPI ++K L++ V N +L+++GETGSGKTTQ+ Q+L AG+ GK IG TQP EE G LG+ VGY+IRF+D T T IKYMTDG+LLRE L+D LS+YSVI++DEAHERT+HTDVL GLLKK+ R Sbjct: 498 PTFGQRS--KLSIQEQRESLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGK-IGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTIHTDVLFGLLKKLMKRR 658
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: PRP22_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 OS=Schizosaccharomyces pombe GN=prp22 PE=2 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 5.438e-40 Identity = 89/189 (47.09%), Postives = 120/189 (63.49%), Query Frame = 1 Query: 136 NSSVHQLSLEMPSVAEVSNSTHNPKLHSKPFFNDSSSRRQKIL--QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLK 696 +S+ QL+ E PS + + + N S +R + +QR+ LP+ + K+ +E V KN IL+++GETGSGKTTQ+ Q+L G+ K+IG TQP EE G +G+ VGY+IRF+D+TS T+IKYMTDG+L RE L+DP LS+YSVII+DEAHERTV TDVL GLLK Sbjct: 471 DSAARQLTSETPSWRQATRNA-----------NISYGKRTTLSMKEQREGLPVFKLRKQFLEAVSKNQILVLLGETGSGKTTQITQYLAEEGYTSDSKMIGCTQPRRVAAMSVAKRVAEEVGCRVGEEVGYTIRFEDKTSRMTQIKYMTDGMLQRECLVDPLLSKYSVIILDEAHERTVATDVLFGLLK 648
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX16_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 5.438e-40 Identity = 86/165 (52.12%), Postives = 112/165 (67.88%), Query Frame = 1 Query: 220 KPFFNDSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNAR 714 KP + S+ + I + RKSLP+ ++L++ VR+ +LIIVGETGSGKTTQ+PQ+L AGF + GK IG TQP EE G +LG VGYSIRF+D TS T ++YMTDG+L+RE L P L+ YSV+I+DEAHERT+HTD+L GLLK + R Sbjct: 447 KPGDDGSAQAKMTIQEVRKSLPVYPYREQLIDAVREYQVLIIVGETGSGKTTQIPQYLHEAGFSKTGK-IGCTQPRRVAAMSVAARVAEEVGCKLGNEVGYSIRFEDCTSQKTVLQYMTDGMLVREFLTAPDLASYSVLIIDEAHERTLHTDILFGLLKDITRFR 610
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX15_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15 OS=Dictyostelium discoideum GN=dhx15 PE=3 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 7.102e-40 Identity = 83/176 (47.16%), Postives = 119/176 (67.61%), Query Frame = 1 Query: 187 SNSTHNPKLHSKPFFNDSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNAR 714 SN T + + K F S R +IL++RK LP+ ++ ++ +++N ++I+VGETGSGKTTQ+PQF+ AG R GK++GVTQP EE ELG+ VGYSIRF++ +S T +KY+TDG+LLRE++ DP L++Y VII+DEAHERT+ TD+L GL+K + R Sbjct: 49 SNLTIDQWIPKKETF---SKRYYEILEKRKELPVWKQKEDFIKVIKENQVVILVGETGSGKTTQIPQFVVDAGLIRPGKMVGVTQPRRVAAISVAKRVSEEMDFELGEEVGYSIRFEELSSARTFMKYLTDGMLLRESMSDPTLNKYDVIILDEAHERTLSTDILFGLIKDILKRR 221
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: MOG5_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 OS=Caenorhabditis elegans GN=mog-5 PE=2 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 4.603e-39 Identity = 85/152 (55.92%), Postives = 107/152 (70.39%), Query Frame = 1 Query: 259 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNAR 714 +++QR+SLPI +++K L+E + N IL++VGETGSGKTTQ+ Q+ AG R GK IG TQP EE G +LG VGY+IRF+D TS T IKYMTDG+LLRE L+DP LS YS+I++DEAHERT+HTDVL GLLK R Sbjct: 533 MVEQRESLPIFALKKNLMEAMIDNQILVVVGETGSGKTTQMTQYAIEAGLGRRGK-IGCTQPRRVAAMSVAKRVAEEYGCKLGTDVGYTIRFEDCTSQDTIIKYMTDGMLLRECLIDPDLSGYSLIMLDEAHERTIHTDVLFGLLKAAARKR 683
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: PRP16_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 OS=Schizosaccharomyces pombe GN=prp16 PE=2 SV=2) HSP 1 Score: 160.999 bits (406), Expect = 7.852e-39 Identity = 84/157 (53.50%), Postives = 110/157 (70.06%), Query Frame = 1 Query: 244 SRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNAR 714 +R + +QR+ LP +V ++L+ +R N +LI+VGETGSGKTTQL QFL+ G+ R G +IG TQP EE GV LG VGYSIRF+D T T IKYMTDG+LLRE+L+ L +YSVII+DEAHER+++TD+L+GLLKKV + R Sbjct: 480 ARTKSYREQREFLPAFAVREQLLSVIRDNQVLIVVGETGSGKTTQLAQFLYEDGYHRNG-MIGCTQPRRVAAMSVAKRVSEEMGVRLGSTVGYSIRFEDVTGPDTVIKYMTDGVLLRESLMQNNLEKYSVIIMDEAHERSLNTDILMGLLKKVLSRR 635
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: PRH1_SCHPO (Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces pombe GN=prh1 PE=2 SV=2) HSP 1 Score: 160.614 bits (405), Expect = 1.026e-38 Identity = 82/177 (46.33%), Postives = 117/177 (66.10%), Query Frame = 1 Query: 184 VSNSTHNPKLHSKPFFNDSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNAR 714 V + +P+ S+ +S S+R+ IL+QRK+LPI L ++++ N ++++VGETGSGK+TQ+PQFL + + G + +TQP E G LG++VGYSIRFDD TS TRIKY+TDG+LLRE + DP LS+Y +I+DEAHERT+ TD+LLG +KK+ R Sbjct: 68 VGSDNSSPEKRSE----NSPSKRKDILEQRKNLPIWEAHDTLCQQIQDNRVIVVVGETGSGKSTQIPQFLNECPYAQEG-CVAITQPRRVAAVNLAKRVAAEQGCRLGEQVGYSIRFDDTTSKKTRIKYLTDGMLLRELINDPILSQYHTLILDEAHERTLMTDMLLGFVKKIIKKR 239 The following BLAST results are available for this feature:
BLAST of CX671545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 87
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671545 ID=CX671545; Name=CX671545; organism=Citrus sinensis; type=EST; length=860bpback to top |