CX671545

Overview
NameCX671545
Unique NameCX671545
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX16_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4 OS=Caenorhabditis elegans GN=mog-4 PE=2 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 4.023e-43
Identity = 93/204 (45.59%), Postives = 130/204 (63.73%), Query Frame = 1
Query:  235 DSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGIN--TLKQMPGRKFP 840
            ++  ++  I + RKSLP+ +     +E V+++ +LII GETGSGKTTQLPQ+L+ AGFC GGK IG TQP             +E G +LG +VGYSIRF+D TS  T +KYMTDG+LLRE L +P L+ YSV+++DEAHERT+HTD+L GL+K +   R          + K   S   LD E  ++  +   + ++PGR+FP
Sbjct:  349 EAEKKKMSIEETRKSLPVYAFRDAFIEAVKEHQVLIIEGETGSGKTTQLPQYLYEAGFCEGGKRIGCTQPRRVAAMSVAARVADEVGCKLGTQVGYSIRFEDCTSEKTVLKYMTDGMLLREFLNEPDLASYSVMMIDEAHERTLHTDILFGLVKDIARFRK---------DLKLLISSATLDAEKFSSFFDDAPIFRIPGRRFP 543          
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX8_MOUSE (ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.294e-41
Identity = 95/192 (49.48%), Postives = 126/192 (65.62%), Query Frame = 1
Query:  151 QLSLEMPSVAEVSNSTHNPKLHSKPFFNDSSSRRQK----ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNAR 714
            Q++  M  +  + N     K H+  F  + +S  +K    IL+QR+SLPI  ++++LV+ V  N ILI++GETGSGKTTQ+ Q+L  AG+   GK IG TQP             EE G  LGQ VGY+IRF+D TS  T IKYMTDG+LLRE L+DP L++Y++I++DEAHERT+HTDVL GLLKK    R
Sbjct:  544 QIAANMRGIGMMPNDIPEWKKHA--FGGNKASYGKKTQMSILEQRESLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGK-IGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKR 732          
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX8_HUMAN (ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.294e-41
Identity = 95/192 (49.48%), Postives = 126/192 (65.62%), Query Frame = 1
Query:  151 QLSLEMPSVAEVSNSTHNPKLHSKPFFNDSSSRRQK----ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNAR 714
            Q++  M  +  + N     K H+  F  + +S  +K    IL+QR+SLPI  ++++LV+ V  N ILI++GETGSGKTTQ+ Q+L  AG+   GK IG TQP             EE G  LGQ VGY+IRF+D TS  T IKYMTDG+LLRE L+DP L++Y++I++DEAHERT+HTDVL GLLKK    R
Sbjct:  520 QIAANMRGIGMMPNDIPEWKKHA--FGGNKASYGKKTQMSILEQRESLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGK-IGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKR 708          
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX8_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 3.188e-40
Identity = 87/164 (53.05%), Postives = 111/164 (67.68%), Query Frame = 1
Query:  223 PFFNDSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNAR 714
            P F   S  +  I +QR+SLPI  ++K L++ V  N +L+++GETGSGKTTQ+ Q+L  AG+   GK IG TQP             EE G  LG+ VGY+IRF+D T   T IKYMTDG+LLRE L+D  LS+YSVI++DEAHERT+HTDVL GLLKK+   R
Sbjct:  498 PTFGQRS--KLSIQEQRESLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGK-IGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTIHTDVLFGLLKKLMKRR 658          
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: PRP22_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 OS=Schizosaccharomyces pombe GN=prp22 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 5.438e-40
Identity = 89/189 (47.09%), Postives = 120/189 (63.49%), Query Frame = 1
Query:  136 NSSVHQLSLEMPSVAEVSNSTHNPKLHSKPFFNDSSSRRQKIL--QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLK 696
            +S+  QL+ E PS  + + +            N S  +R  +   +QR+ LP+  + K+ +E V KN IL+++GETGSGKTTQ+ Q+L   G+    K+IG TQP             EE G  +G+ VGY+IRF+D+TS  T+IKYMTDG+L RE L+DP LS+YSVII+DEAHERTV TDVL GLLK
Sbjct:  471 DSAARQLTSETPSWRQATRNA-----------NISYGKRTTLSMKEQREGLPVFKLRKQFLEAVSKNQILVLLGETGSGKTTQITQYLAEEGYTSDSKMIGCTQPRRVAAMSVAKRVAEEVGCRVGEEVGYTIRFEDKTSRMTQIKYMTDGMLQRECLVDPLLSKYSVIILDEAHERTVATDVLFGLLK 648          
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX16_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 5.438e-40
Identity = 86/165 (52.12%), Postives = 112/165 (67.88%), Query Frame = 1
Query:  220 KPFFNDSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNAR 714
            KP  + S+  +  I + RKSLP+    ++L++ VR+  +LIIVGETGSGKTTQ+PQ+L  AGF + GK IG TQP             EE G +LG  VGYSIRF+D TS  T ++YMTDG+L+RE L  P L+ YSV+I+DEAHERT+HTD+L GLLK +   R
Sbjct:  447 KPGDDGSAQAKMTIQEVRKSLPVYPYREQLIDAVREYQVLIIVGETGSGKTTQIPQYLHEAGFSKTGK-IGCTQPRRVAAMSVAARVAEEVGCKLGNEVGYSIRFEDCTSQKTVLQYMTDGMLVREFLTAPDLASYSVLIIDEAHERTLHTDILFGLLKDITRFR 610          
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX15_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15 OS=Dictyostelium discoideum GN=dhx15 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.102e-40
Identity = 83/176 (47.16%), Postives = 119/176 (67.61%), Query Frame = 1
Query:  187 SNSTHNPKLHSKPFFNDSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNAR 714
            SN T +  +  K  F   S R  +IL++RK LP+   ++  ++ +++N ++I+VGETGSGKTTQ+PQF+  AG  R GK++GVTQP             EE   ELG+ VGYSIRF++ +S  T +KY+TDG+LLRE++ DP L++Y VII+DEAHERT+ TD+L GL+K +   R
Sbjct:   49 SNLTIDQWIPKKETF---SKRYYEILEKRKELPVWKQKEDFIKVIKENQVVILVGETGSGKTTQIPQFVVDAGLIRPGKMVGVTQPRRVAAISVAKRVSEEMDFELGEEVGYSIRFEELSSARTFMKYLTDGMLLRESMSDPTLNKYDVIILDEAHERTLSTDILFGLIKDILKRR 221          
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: MOG5_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 OS=Caenorhabditis elegans GN=mog-5 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.603e-39
Identity = 85/152 (55.92%), Postives = 107/152 (70.39%), Query Frame = 1
Query:  259 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNAR 714
            +++QR+SLPI +++K L+E +  N IL++VGETGSGKTTQ+ Q+   AG  R GK IG TQP             EE G +LG  VGY+IRF+D TS  T IKYMTDG+LLRE L+DP LS YS+I++DEAHERT+HTDVL GLLK     R
Sbjct:  533 MVEQRESLPIFALKKNLMEAMIDNQILVVVGETGSGKTTQMTQYAIEAGLGRRGK-IGCTQPRRVAAMSVAKRVAEEYGCKLGTDVGYTIRFEDCTSQDTIIKYMTDGMLLRECLIDPDLSGYSLIMLDEAHERTIHTDVLFGLLKAAARKR 683          
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: PRP16_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 OS=Schizosaccharomyces pombe GN=prp16 PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 7.852e-39
Identity = 84/157 (53.50%), Postives = 110/157 (70.06%), Query Frame = 1
Query:  244 SRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNAR 714
            +R +   +QR+ LP  +V ++L+  +R N +LI+VGETGSGKTTQL QFL+  G+ R G +IG TQP             EE GV LG  VGYSIRF+D T   T IKYMTDG+LLRE+L+   L +YSVII+DEAHER+++TD+L+GLLKKV + R
Sbjct:  480 ARTKSYREQREFLPAFAVREQLLSVIRDNQVLIVVGETGSGKTTQLAQFLYEDGYHRNG-MIGCTQPRRVAAMSVAKRVSEEMGVRLGSTVGYSIRFEDVTGPDTVIKYMTDGVLLRESLMQNNLEKYSVIIMDEAHERSLNTDILMGLLKKVLSRR 635          
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: PRH1_SCHPO (Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces pombe GN=prh1 PE=2 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 1.026e-38
Identity = 82/177 (46.33%), Postives = 117/177 (66.10%), Query Frame = 1
Query:  184 VSNSTHNPKLHSKPFFNDSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNAR 714
            V +   +P+  S+    +S S+R+ IL+QRK+LPI      L ++++ N ++++VGETGSGK+TQ+PQFL    + + G  + +TQP              E G  LG++VGYSIRFDD TS  TRIKY+TDG+LLRE + DP LS+Y  +I+DEAHERT+ TD+LLG +KK+   R
Sbjct:   68 VGSDNSSPEKRSE----NSPSKRKDILEQRKNLPIWEAHDTLCQQIQDNRVIVVVGETGSGKSTQIPQFLNECPYAQEG-CVAITQPRRVAAVNLAKRVAAEQGCRLGEQVGYSIRFDDTTSKKTRIKYLTDGMLLRELINDPILSQYHTLILDEAHERTLMTDMLLGFVKKIIKKR 239          
The following BLAST results are available for this feature:
BLAST of CX671545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
DHX16_CAEEL4.023e-4345.59Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX8_MOUSE1.294e-4149.48ATP-dependent RNA helicase DHX8 OS=Mus musculus GN... [more]
DHX8_HUMAN1.294e-4149.48ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN... [more]
DHX8_ARATH3.188e-4053.05Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
PRP22_SCHPO5.438e-4047.09Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX16_DICDI5.438e-4052.12Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX15_DICDI7.102e-4047.16Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
MOG5_CAEEL4.603e-3955.92Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
PRP16_SCHPO7.852e-3953.50Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
PRH1_SCHPO1.026e-3846.33Probable ATP-dependent RNA helicase prh1 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11F12_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11F12-L23-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671545 ID=CX671545; Name=CX671545; organism=Citrus sinensis; type=EST; length=860bp
GTAATTCTCGTTTGATTTCGTCTGTTGATTACCGGCATATGATGTTTATT
TTAAGAAGAAGAGAAGCAAAGAGAGCAACATCAAGTTCTTTCTCAAACAA
AAACTGAAGTGATAATCATAGTTGTTTGTTTTGGGAACTCTTCTGTACAT
CAATTAAGTCTCGAGATGCCGTCAGTGGCTGAAGTGAGTAACTCCACTCA
CAACCCCAAGCTTCACTCCAAACCCTTCTTCAATGACTCCTCTTCCAGGA
GGCAAAAAATTCTTCAACAGAGAAAATCCCTGCCAATTGCTTCAGTTGAG
AAACGACTTGTGGAGGAGGTCCGTAAAAATGATATTTTGATTATAGTTGG
TGAAACCGGAAGTGGAAAAACAACTCAATTGCCTCAGTTTCTGTTTCATG
CGGGATTTTGTCGCGGTGGTAAACTTATTGGAGTAACACAACCTAGGCGG
GTTGCGGCTGTCACTGTCGCTAAGCGGGTAGCAGAGGAATCTGGTGTTGA
GTTGGGCCAACGAGTTGGCTATTCCATTAGATTTGATGATAGGACTTCCA
CTTCAACAAGGATCAAGTACATGACTGATGGGCTGCTATTAAGGGAAGCA
TTACTTGATCCATACCTCTCTCGGTATTCTGTCATCATTGTTGATGAAGC
TCATGAGAGAACTGTCCATACTGATGTATTGCTGGGCTTGCTGAAAAAGG
TACAAAATGCAAGGTCAAAATCTGCAGATGGCCACTCTAATGGCAATAAC
AAGAATGCAGACAGTGACATGATACTGGACAGAGAAAATGACACAAATGG
CATCAATACTTTGAAGCAAATGCCAGGACGAAAATTTCCTCCTTTAAAGT
AATCATCATG
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