CX671543

Overview
NameCX671543
Unique NameCX671543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5063 contig Csv1_Contig5063:1..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671543 vs. ExPASy Swiss-Prot
Match: FLA17_ARATH (Fasciclin-like arabinogalactan protein 17 OS=Arabidopsis thaliana GN=FLA17 PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 3.556e-75
Identity = 152/250 (60.80%), Postives = 181/250 (72.40%), Query Frame = 1
Query:   64 LLMFIFPLQLTASMQLQGNNA--THSGQINSNSVLVALLDSHYTELSELVEKALLLQPLEDAVGKHSITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTLLLHHIVSTRIELNRTATEST---QHHTLSSDSVELTSHDSGDKFISQSKVIHPNAVDRPDGVIHGIERLLIPRSVQQDFNNRRNLRSISAVRPEGAPEVDPRTNRLKKPTPASKPGSSPALPVYYAMXXXXXXXXXXXXXXXXXHHHF 798
            L +F   L  +A+  L  N +  + SGQINSNSVLVALLDS YTEL+ELVEKALLLQ LEDAVG+H+ITIFAP+NEALERDLDPEFKRFLLEPGNLKSLQTLL+ HI+  R+  N+  +E +   +HHTL +D V L S+  G K +  +++I P+ + RPDG+IHGIERLLIPRSVQ+DFN RR+L+SISAV PEGAPEVDPRTNRLKKP      GS PALP+  AM                  HHF
Sbjct:   14 LFLFFSVLIFSAASALSKNQSPSSGSGQINSNSVLVALLDSRYTELAELVEKALLLQTLEDAVGRHNITIFAPRNEALERDLDPEFKRFLLEPGNLKSLQTLLMFHIIPNRVGSNQWPSEESGRVKHHTLGNDQVRL-SNGQGKKMVDLAEIIRPDDLTRPDGLIHGIERLLIPRSVQEDFNRRRSLQSISAVLPEGAPEVDPRTNRLKKPAAPVPAGSPPALPIQSAMAPGPSLAPAPAPGPGGKQHHF 262          
BLAST of CX671543 vs. ExPASy Swiss-Prot
Match: FLA18_ARATH (Fasciclin-like arabinogalactan protein 18 OS=Arabidopsis thaliana GN=FLA18 PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 2.019e-70
Identity = 152/257 (59.14%), Postives = 179/257 (69.65%), Query Frame = 1
Query:   55 SFLLLMFIFPLQLTASMQLQGN-NATHSGQINSNSVLVALLDSHYTELSELVEKALLLQPLEDAVGKHSITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTLLLHHIVSTRIELNRTATEST---QHHTLSSDSVELTSH---DSGDKFISQSKVIHPNAVDRPDGVIHGIERLLIPRSVQQDFNNRRNLRSISAVRPEGAPEVDPRTNRLKK-PTPASKP-GSSPALPVYYAMXXXXXXXXXXXXXXXXXHHHF 798
            S + + F F   L AS    G+ N T SGQINSNSVLVALLDS YTEL+ELVEKALLLQ LEDAVG+H+ITIFAP+NEALERDLDP+FKRFLL+PGNLKSLQTLLL HI+  R+  N+   E++   +H TL  D V   S     +G + ++ + +  P+ + RPDG+IHGIERLLIPRSVQ+DFN RRNLRSISAV PEGAPE+DPRTNRLKK  T  S P GS P LP+  AM                 H HF
Sbjct:    9 SVITIFFSFFFLLNASALESGHHNITGSGQINSNSVLVALLDSRYTELAELVEKALLLQTLEDAVGRHNITIFAPRNEALERDLDPDFKRFLLQPGNLKSLQTLLLSHIIPKRVGSNQWPEENSGRVKHVTLGHDQVLHLSKLKGTNGKRLVNSAVITRPDDLTRPDGLIHGIERLLIPRSVQEDFNRRRNLRSISAVLPEGAPEIDPRTNRLKKSATAVSVPAGSPPVLPIESAMAPGPSLAPAPAPGPGGAHKHF 265          
BLAST of CX671543 vs. ExPASy Swiss-Prot
Match: FLA16_ARATH (Fasciclin-like arabinogalactan protein 16 OS=Arabidopsis thaliana GN=FLA16 PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 2.019e-70
Identity = 145/226 (64.16%), Postives = 173/226 (76.55%), Query Frame = 1
Query:   58 FLLLMFIFPLQLTASMQLQGNNATHSGQINSNSVLVALLDSHYTELSELVEKALLLQPLEDAVGKHSITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTLLLHHIVSTRIELNRTATESTQHHTLSSDSVELTSHDSGDKFISQSKVIHPNAVDRPDGVIHGIERLLIPRSVQQDFNNRRNLRSISAVRPEGAPEVDPRTNRLKKPTPASKPGSSPALPVYYAM 735
            FLLL+F+     TA      +N    GQINSNSVLVALLDSHYTEL+ELVEKALLLQ LE+AVGKH+ITIFAP+N+ALER+LDP FK FLLEP NLKSLQ+LL+ HI+  RI   +  + S  H TLS+D + LT  D     +  +++I P+ V RPDG+IHGIERLLIPRSVQ+DFN RR+LRSISAV PEGAPEVDPRT+RLKKP+PA   G+ P LP+Y AM
Sbjct:   10 FLLLLFLTTSIATALP----DNKPVPGQINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGKHNITIFAPRNDALERNLDPLFKSFLLEPRNLKSLQSLLMFHILPKRITSPQWPSLSHHHRTLSNDHLHLTV-DVNTLKVDSAEIIRPDDVIRPDGIIHGIERLLIPRSVQEDFNRRRSLRSISAVIPEGAPEVDPRTHRLKKPSPAVPAGAPPVLPIYDAM 230          
BLAST of CX671543 vs. ExPASy Swiss-Prot
Match: FLA15_ARATH (Fasciclin-like arabinogalactan protein 15 OS=Arabidopsis thaliana GN=FLA15 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 7.940e-67
Identity = 137/245 (55.92%), Postives = 171/245 (69.80%), Query Frame = 1
Query:   64 LLMFIFPLQLTASMQLQGNNATHSGQINSNSVLVALLDSHYTELSELVEKALLLQPLEDAVGKHSITIFAPKNEALERDLDPEFKRFLLEPGNLKSLQTLLLHHIVSTRIELNRTATESTQHHTLSSDSVELTSHDSGDKFISQSKVIHPNAVDRPDGVIHGIERLLIPRSVQQDFNNRRNLRSISAVRPEGAPEVDPRTNRLKKPTPASKPGSSPALPVYYAMXXXXXXXXXXXXXXXXXHHHF 798
            L   +F L LT S+     +   SGQINSNSVLVALLDSHYTEL+ELVEKALLLQ LE+AVG+H+ITIFAP+N+ALE++LDPEFK FLL+P NLKSLQ+LL+ HI+  RI   + ++    H TLS+D +  T+       ++ +++  P+ + RPDG+IHGIERLLIPRSVQ+DFN RR+LRSI+AV PEGAPEVDPRT+RLKK       G+ P LPVY AM                  HHF
Sbjct:    4 LSKLLFFLLLTISITTALPDKPGSGQINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGQHNITIFAPRNDALEKNLDPEFKSFLLQPKNLKSLQSLLMFHILPKRITSPQFSSAVVSHRTLSNDHLHFTNGK-----VNSAEITKPDDLTRPDGIIHGIERLLIPRSVQEDFNRRRSLRSIAAVLPEGAPEVDPRTHRLKKKPAPIPAGAPPVLPVYDAMSPGPSLAPAPAPGPGGPRHHF 243          
The following BLAST results are available for this feature:
BLAST of CX671543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
FLA17_ARATH3.556e-7560.80Fasciclin-like arabinogalactan protein 17 OS=Arabi... [more]
FLA18_ARATH2.019e-7059.14Fasciclin-like arabinogalactan protein 18 OS=Arabi... [more]
FLA16_ARATH2.019e-7064.16Fasciclin-like arabinogalactan protein 16 OS=Arabi... [more]
FLA15_ARATH7.940e-6755.92Fasciclin-like arabinogalactan protein 15 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_11F11_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11F11-L21-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671543 ID=CX671543; Name=CX671543; organism=Citrus sinensis; type=EST; length=799bp
CGTTCATTCAATTCATTCTATTCGGTTTCAATGGCCGAAACTCGGAAACT
CATTTCATTTCTTCTTTTAATGTTTATATTCCCTCTCCAACTCACGGCTT
CAATGCAATTGCAAGGAAACAACGCAACTCACTCTGGCCAAATCAACTCC
AACTCAGTCCTGGTCGCACTTCTCGACTCGCATTACACCGAACTCTCTGA
GCTCGTCGAGAAAGCTCTCCTCTTGCAGCCACTCGAAGATGCTGTCGGCA
AGCACAGCATCACCATTTTCGCTCCCAAAAATGAAGCTTTGGAGCGGGAT
CTCGATCCCGAGTTCAAGCGCTTCTTGCTCGAGCCAGGCAACTTGAAGTC
TCTTCAGACGCTTTTGCTTCATCACATTGTCTCCACGCGAATAGAGTTAA
ACCGGACTGCCACCGAGTCAACTCAGCATCATACACTGTCCAGTGATTCA
GTCGAGCTAACGAGTCATGATTCGGGTGATAAATTTATAAGTCAATCCAA
GGTCATTCATCCGAACGCCGTGGACCGTCCAGATGGAGTCATCCACGGCA
TCGAACGGCTGCTAATCCCTCGATCCGTACAGCAAGATTTCAACAACCGA
AGGAATCTCCGTTCAATCTCAGCCGTTAGACCGGAAGGAGCACCAGAGGT
CGACCCGAGGACAAACCGGTTGAAGAAACCGACACCAGCCTCCAAACCCG
GCTCATCTCCGGCCCTTCCGGTTTACTACGCAATGGCTCCCGGGTCTTCA
CTAGCTCCGGCCCCGGCACCAGGGCCGGGCGGGCCGCACCACCACTTCA
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