CX671542

Overview
NameCX671542
Unique NameCX671542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5063 contig Csv1_Contig5063:574..1455. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671542 vs. ExPASy Swiss-Prot
Match: FLA17_ARATH (Fasciclin-like arabinogalactan protein 17 OS=Arabidopsis thaliana GN=FLA17 PE=2 SV=1)

HSP 1 Score: 400.208 bits (1027), Expect = 8.052e-111
Identity = 204/277 (73.65%), Postives = 223/277 (80.51%), Query Frame = -1
Query:   52 SVQQDFNNRRNLRSISAVRPEGAPEVDPRTNRLKKPTPASKPGSSPALPVYYAMXXXXXXXXXXXXXXXXPHHHFNGEKQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHVIPEYQTEESMYNAVRRFGKISYDTLRLPHKVLAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPPEETSTKLSESKKNVKVAVKQKPATRRGKLLEVACQMLGAFGQDSHFSTCQ 882
            SVQ+DFN RR+L+SISAV PEGAPEVDPRTNRLKKP      GS PALP+  AM                  HHF+GE QVKDFI TLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQI+YYH+IPEYQTEESMYN+VRRFGK+ +DTLR PHKV A+EADGSVKFG G+ SAYLFDPDIYTDGRISVQGIDGVLFP EE      E  ++VK  VK+    RRGKLLEVAC MLGAFG+D++ S C+
Sbjct:  188 SVQEDFNRRRSLQSISAVLPEGAPEVDPRTNRLKKPAAPVPAGSPPALPIQSAMAPGPSLAPAPAPGPGGKQHHFDGEAQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIVYYHIIPEYQTEESMYNSVRRFGKVKFDTLRFPHKVAAKEADGSVKFGDGEKSAYLFDPDIYTDGRISVQGIDGVLFPQEE------EVVESVKKPVKKIVQPRRGKLLEVACSMLGAFGKDTYLSKCR 458          
BLAST of CX671542 vs. ExPASy Swiss-Prot
Match: FLA16_ARATH (Fasciclin-like arabinogalactan protein 16 OS=Arabidopsis thaliana GN=FLA16 PE=2 SV=1)

HSP 1 Score: 399.438 bits (1025), Expect = 1.373e-110
Identity = 208/277 (75.09%), Postives = 225/277 (81.23%), Query Frame = -1
Query:   52 SVQQDFNNRRNLRSISAVRPEGAPEVDPRTNRLKKPTPASKPGSSPALPVYYAMXXXXXXXXXXXXXXXXPHHHFNGEKQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHVIPEYQTEESMYNAVRRFGKISYDTLRLPHKVLAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPPEETSTKLSESKKNVKVAVKQKPATRRGKLLEVACQMLGAFGQDSHFSTCQ 882
            SVQ+DFN RR+LRSISAV PEGAPEVDPRT+RLKKP+PA   G+ P LP+Y AM                P  HFNG+ QVKDFI TLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQI+YYH+IPEYQTEESMYNAVRRFGK+ YD+LR PHKVLAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFP EET    +E K    V VK+   +RRGKL+EVAC+M+G     S F  CQ
Sbjct:  177 SVQEDFNRRRSLRSISAVIPEGAPEVDPRTHRLKKPSPAVPAGAPPVLPIYDAMSPGPSLAPAPAPGPGGPRGHFNGDAQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKVKYDSLRFPHKVLAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPKEETPA--TEIKPAAPV-VKKVSKSRRGKLMEVACRMMG-----SRFIPCQ 445          
BLAST of CX671542 vs. ExPASy Swiss-Prot
Match: FLA15_ARATH (Fasciclin-like arabinogalactan protein 15 OS=Arabidopsis thaliana GN=FLA15 PE=2 SV=1)

HSP 1 Score: 397.512 bits (1020), Expect = 5.219e-110
Identity = 209/277 (75.45%), Postives = 221/277 (79.78%), Query Frame = -1
Query:   52 SVQQDFNNRRNLRSISAVRPEGAPEVDPRTNRLKKPTPASKPGSSPALPVYYAMXXXXXXXXXXXXXXXXPHHHFNGEKQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHVIPEYQTEESMYNAVRRFGKISYDTLRLPHKVLAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPPEETSTKLSESKKNVKVAVKQKPATRRGKLLEVACQMLGAFGQDSHFSTCQ 882
            SVQ+DFN RR+LRSI+AV PEGAPEVDPRT+RLKK       G+ P LPVY AM                P HHFNGE QVKDFI TLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQI+YYH+IPEYQTEESMYN+VRRFGKI YD+LR PHKV AQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFP E+T     E K  V V VK+ P  RRGKL+EVAC MLG     S F TCQ
Sbjct:  169 SVQEDFNRRRSLRSIAAVLPEGAPEVDPRTHRLKKKPAPIPAGAPPVLPVYDAMSPGPSLAPAPAPGPGGPRHHFNGEAQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNSVRRFGKIRYDSLRFPHKVEAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPEEKTPV---EKKTGVPV-VKKAPKPRRGKLMEVACTMLG-----SQFPTCQ 436          
BLAST of CX671542 vs. ExPASy Swiss-Prot
Match: FLA18_ARATH (Fasciclin-like arabinogalactan protein 18 OS=Arabidopsis thaliana GN=FLA18 PE=2 SV=1)

HSP 1 Score: 390.578 bits (1002), Expect = 6.380e-108
Identity = 205/278 (73.74%), Postives = 219/278 (78.78%), Query Frame = -1
Query:   55 SVQQDFNNRRNLRSISAVRPEGAPEVDPRTNRLKKP-TPASKP-GSSPALPVYYAMXXXXXXXXXXXXXXXXPHHHFNGEKQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHVIPEYQTEESMYNAVRRFGKISYDTLRLPHKVLAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPPEETSTKLSESKKNVKVAVKQKPATRRGKLLEVACQMLGAFGQDSHFSTC 882
            SVQ+DFN RRNLRSISAV PEGAPE+DPRTNRLKK  T  S P GS P LP+  AM                 H HFNG+ QVKDFI TLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAM KLTTDQLSEPGAPEQI+YYH+IPEYQTEESMYN+VRRFGK+ Y+TLR PHKV A+EADGSVKFG GD SAYLFDPDIYTDGRISVQGIDGVLFP E    K  E+ K     VK+    RRGKLLEVAC MLGA G+DS+ S C
Sbjct:  189 SVQEDFNRRRNLRSISAVLPEGAPEIDPRTNRLKKSATAVSVPAGSPPVLPIESAMAPGPSLAPAPAPGPGGAHKHFNGDAQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMGKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNSVRRFGKVKYETLRFPHKVGAKEADGSVKFGSGDRSAYLFDPDIYTDGRISVQGIDGVLFPEE----KEEETVKKPTGPVKKVVQPRRGKLLEVACSMLGAIGKDSYLSRC 462          
The following BLAST results are available for this feature:
BLAST of CX671542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
FLA17_ARATH8.052e-11173.65Fasciclin-like arabinogalactan protein 17 OS=Arabi... [more]
FLA16_ARATH1.373e-11075.09Fasciclin-like arabinogalactan protein 16 OS=Arabi... [more]
FLA15_ARATH5.219e-11075.45Fasciclin-like arabinogalactan protein 15 OS=Arabi... [more]
FLA18_ARATH6.380e-10873.74Fasciclin-like arabinogalactan protein 18 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_11F11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11F11-L21-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671542 ID=CX671542; Name=CX671542; organism=Citrus sinensis; type=EST; length=882bp
AGAATTGGAATTCTACCTTTATCCTTGTTTGAAGTATTCTTTTAATTTTC
ACTGGCATGTGCTGAAATGGGAATCTTGTCCAAAGGCACCAAGCATCTGG
CATGCCACTTCAAGCAATTTTCCTCTTCTTGTTGCAGGTTTTTGTTTTAC
AGCGACTTTGACATTTTTTTTACTTTCCGATAATTTCGTCGACGTTTCCT
CGGGCGGGAACAAAACCCCGTCAATTCCCTGAACCGAAATTCGGCCATCG
GTATAAATATCGGGGTCAAACAAATAGGCCGATCCGTCACCATGGCCGAA
TTTCACAGACCCATCAGCTTCCTGTGCCAAAACTTTATGCGGCAAACGCA
GCGTATCGTACGAAATCTTCCCGAATCTTCTCACCGCATTGTACATGCTC
TCCTCCGTCTGATACTCCGGAATCACGTGGTAGTAAATAATCTGTTCCGG
CGCTCCCGGCTCGCTCAGCTGGTCCGTCGTCAGCTTAGCCATGGCTTCAT
CATTCGGCGCCAATACCGTCAAAACATATCCCTCCGACACAAGCCGCCCC
ATTTCCGTTGCCAGCGACGTCAGATTCACTAAAATATCGGCCATTTCGTT
GTACCCGCCGTAGTGTAAAAGCGTTTGGATGAAATCCTTCACTTGCTTCT
CTCCGTTGAAGTGGTGGTGCGGCCCGCCCGGCCCTGGTGCCGGGGCCGGA
GCTAGTGAAGGACCGGGAGCCATTGCGTAGTAAACCGGAAGGGCCGGAGA
TGAGCCGGGTTTGGAGGCTGGTGTCGGTTTCTTCAACCGGTTTGTCCTCG
GGTCGACCTCTGGTGCTCCTTCCGGTCTAACGGCTGAGATTGAACGGAGA
TTCCTTCGGTTGTTGAAATCTTGCTGTACGGA
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