CX671536

Overview
NameCX671536
Unique NameCX671536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12466 contig Csv1_Contig12466:858..1702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671536 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 6.966e-97
Identity = 151/182 (82.97%), Postives = 159/182 (87.36%), Query Frame = -2
Query:  299 NIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 844
            NIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNVADDDIVKLVDTFPGQSIDFFGALRARVY DEVR W            LVNSKE  P+FEQP+MT++KLL YG M+VQEQENVKRVQLADKY+SEAALG+AN DAI+ G FYG
Sbjct:  256 NIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYG 437          

HSP 2 Score: 67.781 bits (164), Expect = 6.966e-97
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = -3
Query:  154 GGKAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQY 264
            GG+AAQQ+ NVPVPEGCTDP A N+DPTARSDDGSC Y
Sbjct:  437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVY 474          
BLAST of CX671536 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 300.056 bits (767), Expect = 5.368e-94
Identity = 142/182 (78.02%), Postives = 162/182 (89.01%), Query Frame = -2
Query:  299 NIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 844
            NIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR DNV D+DIVK+VD+FPGQSIDFFGALRARVYDDEVR W            LVNS+E  P FEQP+MT+EKL+EYG M+V+EQENVKRVQLA++YLSEAALG+AN+DA+++G+FYG
Sbjct:  247 NIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 428          

HSP 2 Score: 66.2402 bits (160), Expect = 5.368e-94
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = -3
Query:  151 GKAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQYT 261
            G+ AQQ  N+PVPEGCTDP A+NFDPTARSDDGSC YT
Sbjct:  428 GQGAQQAGNLPVPEGCTDPVAKNFDPTARSDDGSCLYT 465          
BLAST of CX671536 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 288.5 bits (737), Expect = 3.777e-92
Identity = 142/182 (78.02%), Postives = 151/182 (82.97%), Query Frame = -2
Query:  299 NIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 844
            NIADNPT VQLPGMYNKEEN RVPII TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D + D+DIV LVD FPGQSIDFFGALRARVYDDEVR +            LVNS+E  P FEQP MT EKL+EYGNM+V EQENVKRVQLA+ YLS+AALG+ANADAI  G FYG
Sbjct:  256 NIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYG 437          

HSP 2 Score: 71.633 bits (174), Expect = 3.777e-92
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = -3
Query:  154 GKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQY 261
            GK AQQ+N+PVPEGCTDP AENFDPTARSDDG+C Y
Sbjct:  437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVY 472          
BLAST of CX671536 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 2.429e-91
Identity = 138/182 (75.82%), Postives = 159/182 (87.36%), Query Frame = -2
Query:  299 NIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 844
            NIAD PT VQLPGMYNK ENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+ DNV+D+ +VK+VDTFPGQSIDFFGALRARVYDDEVR W            LVNS++   TFEQP+MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AALG+AN DA+++G+FYG
Sbjct:  246 NIADAPTNVQLPGMYNKRENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427          

HSP 2 Score: 65.0846 bits (157), Expect = 2.429e-91
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = -3
Query:  151 GKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYT 261
            GK AQQ  +PVPEGCTD  A+N+DPTARSDDGSC YT
Sbjct:  427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYT 463          
BLAST of CX671536 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 282.722 bits (722), Expect = 4.946e-89
Identity = 136/182 (74.73%), Postives = 150/182 (82.42%), Query Frame = -2
Query:  299 NIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 844
            NIADNPT VQLPGMYNK++N RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIF+ D V  + +VKLVD FPGQSIDFFGALRARVY DEVR W            LVNSK+  P FEQP MT++KL+EYGNM+VQEQENVKRVQLAD+Y+S AALG+AN DAI  G F+G
Sbjct:  254 NIADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFG 435          

HSP 2 Score: 67.0106 bits (162), Expect = 4.946e-89
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = -3
Query:  148 GKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 261
            GKAAQQ+++PV +GCTDP A+N+DPTARSDDGSC Y L
Sbjct:  435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472          
BLAST of CX671536 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.567e-84
Identity = 153/182 (84.07%), Postives = 162/182 (89.01%), Query Frame = -2
Query:  299 NIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 844
            NIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR+DNVA +DIVKLVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEAALG+AN+DA+ +G FYG
Sbjct:  256 NIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437          
BLAST of CX671536 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 2.766e-81
Identity = 146/182 (80.22%), Postives = 160/182 (87.91%), Query Frame = -2
Query:  299 NIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 844
            NIAD PT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV D+ +V+LVDTFPGQSIDFFGALRARVYDDEVR W            LVNS+E  PTF+QP+MT+EKL+EYG+M+VQEQENVKRVQLADKYLSEAALG+AN DA+++G FYG
Sbjct:  243 NIADAPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 424          
BLAST of CX671536 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 2.766e-81
Identity = 146/180 (81.11%), Postives = 158/180 (87.78%), Query Frame = -2
Query:  305 NIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNF 844
            NIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++DIVK+VD FPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTFEQP+MT++KLL+YGNM+V+EQENVKRVQLADKY+SEAALG+AN DAI+ G F
Sbjct:  256 NIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435          
BLAST of CX671536 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 298.13 bits (762), Expect = 3.995e-80
Identity = 143/181 (79.01%), Postives = 158/181 (87.29%), Query Frame = -2
Query:  302 NIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 844
            NIADNPT VQLPGMYNKEEN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR D V ++DI KLVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTF+QP+M+++KLL+YGNM+VQEQENVKRVQLADKYL+EAALG AN DAI+SG+F+
Sbjct:  258 NIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438          
BLAST of CX671536 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 296.59 bits (758), Expect = 1.162e-79
Identity = 143/181 (79.01%), Postives = 159/181 (87.85%), Query Frame = -2
Query:  302 NIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 844
            NIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V ++ +V+LVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTFEQP++T+EKLLEYG+M+V EQENVKRVQLADKYL+EAALGEAN DA+++G+F+
Sbjct:  252 NIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432          
The following BLAST results are available for this feature:
BLAST of CX671536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA1_LARTR6.966e-9782.97Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ5.368e-9478.02Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH3.777e-9278.02Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU2.429e-9175.82Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL4.946e-8974.73Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO1.567e-8484.07Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU2.766e-8180.22Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR2.766e-8181.11Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU3.995e-8079.01Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE1.162e-7979.01Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11F08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11F08-L15-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671536 ID=CX671536; Name=CX671536; organism=Citrus sinensis; type=EST; length=845bp
TTTTTGATCGAATAAAGAGTTGTGATATAACACAAAATTAGAGGATTCTT
TCTAATTAACAAAGAAATGAAAATGCAACAATATTATTTGAATATCTCAC
ATCCTAAGCAAAGTGCGACACTTCTCAACCCTTAGAAACAAGGCCTAAAG
CGTGTATTGGCAGCTTCCATCATCACTTCTTGCAGTTGGATCAAAGTTTT
CTGCAGTAGGATCAGTACATCCTTCAGGAACTGGAACATTCATTTGCTGG
GCTGCTTTGCCTCCCATCAAGGCCTCTTAGCTAGGATCAAGGGGGCTAAC
CATAGAAATTTCCACTCTGAATAGCATCTGCATTAGCTTCACCAAGAGCG
GCCTCACTCAAATACTTGTCAGCCAACTGAACTCTCTTCACATTCTCTTG
CTCTTGCACAATCATGTTTCCGTACTCGAGCAGCTTCTCCATTGTCATCC
TTGGTTGCTCGAATGTTGGGGCTGCTTCCTTTGAGTTCACAAGGCTCTTG
CCAATGCTTCCAACACCAATACCAGAGATCCAATTCCTCACCTCATCATC
ATAGACTCTGGCCCTCAGGGCTCCAAAGAAATCAATGGATTGGCCGGGGA
AGGTGTCAACAAGCTTGACAATGTCGTCATCAGCCACATTGTCATTCCTG
AAGATACCCTTGCACACACCAATACGGTCCTCCCTTGTAGGTGCCCAGTA
GAATTTCTCCATACGACCATCACGGATGAGAGGAGCATACAATGTTGAGA
AGTCATTACCGGTGACTATGATTGGGACACGGGGGTTCTCCTCCTTGTTG
TACATACCAGGGAGTTGGACACAAGTTGGGTTATCAGCAATGTTC
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