CX671535

Overview
NameCX671535
Unique NameCX671535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671535 vs. ExPASy Swiss-Prot
Match: PSD7_ARATH (Probable 26S proteasome non-ATPase regulatory subunit 7 OS=Arabidopsis thaliana GN=RPN8 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31
Identity = 70/90 (77.78%), Postives = 74/90 (82.22%), Query Frame = -2
Query:  495 YLDLFIDEKLPLNHEILYHLQDVFNLLPNLNVAELIKAFSVKTNDMMLVIYLSSLIRSVIALHXXXXXXXXXKEHEKTEDAKPTAVPTAS 764
            YLDL I+ KLPLNHEILYHLQDVFNLLPNLNV EL+KAFSVKTNDMMLVIYLSSLIRSVIALH         KEHEK ED+KP A+P  S
Sbjct:  219 YLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELVKAFSVKTNDMMLVIYLSSLIRSVIALHNLINNKLLNKEHEKAEDSKPVAIPATS 308          
BLAST of CX671535 vs. ExPASy Swiss-Prot
Match: PSD7_BOVIN (26S proteasome non-ATPase regulatory subunit 7 OS=Bos taurus GN=PSMD7 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.391e-18
Identity = 43/80 (53.75%), Postives = 59/80 (73.75%), Query Frame = -2
Query:  528 GYLDLFIDEKLPLNHEILYHLQDVFNLLPNLNVAELIKAFSVKTNDMMLVIYLSSLIRSVIALHXXXXXXXXXKEHEKTE 767
            GYL+     KLP+NH+I+Y LQDVFNLLP++++ E +KAF +KTND M+V+YL+SLIRSV+ALH         ++ EK E
Sbjct:  210 GYLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDAEKKE 289          
BLAST of CX671535 vs. ExPASy Swiss-Prot
Match: PSD7_HUMAN (26S proteasome non-ATPase regulatory subunit 7 OS=Homo sapiens GN=PSMD7 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.172e-17
Identity = 42/79 (53.16%), Postives = 58/79 (73.42%), Query Frame = -2
Query:  528 YLDLFIDEKLPLNHEILYHLQDVFNLLPNLNVAELIKAFSVKTNDMMLVIYLSSLIRSVIALHXXXXXXXXXKEHEKTE 764
            YL+     KLP+NH+I+Y LQDVFNLLP++++ E +KAF +KTND M+V+YL+SLIRSV+ALH         ++ EK E
Sbjct:  211 YLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDAEKKE 289          
BLAST of CX671535 vs. ExPASy Swiss-Prot
Match: PSD7_MOUSE (26S proteasome non-ATPase regulatory subunit 7 OS=Mus musculus GN=Psmd7 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 4.143e-17
Identity = 42/79 (53.16%), Postives = 57/79 (72.15%), Query Frame = -2
Query:  528 YLDLFIDEKLPLNHEILYHLQDVFNLLPNLNVAELIKAFSVKTNDMMLVIYLSSLIRSVIALHXXXXXXXXXKEHEKTE 764
            YL+     KLP+NH+I+Y LQDVFNLLP+ ++ E +KAF +KTND M+V+YL+SLIRSV+ALH         ++ EK E
Sbjct:  211 YLEKVASGKLPINHQIIYQLQDVFNLLPDASLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDAEKKE 289          
BLAST of CX671535 vs. ExPASy Swiss-Prot
Match: PSD7_DICDI (26S proteasome non-ATPase regulatory subunit 7 OS=Dictyostelium discoideum GN=psmD7 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.580e-16
Identity = 44/92 (47.83%), Postives = 59/92 (64.13%), Query Frame = -2
Query:  489 YLDLFIDEKLPLNHEILYHLQDVFNLLPNLNVAELIKAFSVKTNDMMLVIYLSSLIRSVIALHXXXXXXXXXKEHEKTEDAKPTAVPTASSS 764
            YL L  D  LP NH+I+ ++QD+ NL PNLN  E+ K+F+V+ ND M VIYLSS+IRS+IALH         +E EK  D   +  PT ++S
Sbjct:  209 YLKLVCDGTLPPNHQIIGYIQDIINLSPNLNANEISKSFAVQNNDTMSVIYLSSMIRSIIALHNLIINKTANREAEKKADIINSTPPTTATS 300          
BLAST of CX671535 vs. ExPASy Swiss-Prot
Match: PSD7_DROME (26S proteasome non-ATPase regulatory subunit 7 OS=Drosophila melanogaster GN=Mov34 PE=1 SV=6)

HSP 1 Score: 77.411 bits (189), Expect = 9.550e-14
Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = -2
Query:  576 YLDLFIDEKLPLNHEILYHLQDVFNLLPNLNVAELIKAFSVKTNDMMLVIYLSSLIRSVIALH 764
            YL    D K+P+NH+I+Y LQD+FNLLP++   +      VKTND MLV+YL+S++RS+IALH
Sbjct:  214 YLQRVGDSKMPINHQIVYQLQDIFNLLPDITNDQFTGTMYVKTNDQMLVVYLASMVRSIIALH 276          
BLAST of CX671535 vs. ExPASy Swiss-Prot
Match: RPN8_NEUCR (26S proteasome regulatory subunit rpn-8 OS=Neurospora crassa GN=rpn-8 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.190e-13
Identity = 41/95 (43.16%), Postives = 56/95 (58.95%), Query Frame = -2
Query:  519 YLDLFIDEKLPLNHEILYHLQDVFNLLPNLNV-------------AELIKAFSVKTNDMMLVIYLSSLIRSVIALHXXXXXXXXXKEHEKTEDAK 764
            YL   +D +LP+NH IL +LQDVFNLLPNL+              +EL  A S+KTND ++ IYLSSLIR++ A H         ++ ++  DAK
Sbjct:  219 YLQKVLDGQLPVNHAILGNLQDVFNLLPNLSTPKSGPGATGTNADSELNHAMSIKTNDQLMAIYLSSLIRAITAFHDLIENKIQNRQQQEENDAK 313          
BLAST of CX671535 vs. ExPASy Swiss-Prot
Match: RPN8_YEAST (26S proteasome regulatory subunit RPN8 OS=Saccharomyces cerevisiae GN=RPN8 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.601e-11
Identity = 38/78 (48.72%), Postives = 50/78 (64.10%), Query Frame = -2
Query:  582 YLDLFIDEKLPLNHEILYHLQDVFNLLPNLNVAE-----------------LIKAFSVKTNDMMLVIYLSSLIRSVIA 764
            YLD  I+++LP+NH IL  LQDVFNLLPNL   +                 L KA +VKTND ++VIY+S+L+RS+IA
Sbjct:  210 YLDKVINKELPINHTILGKLQDVFNLLPNLGTPDDDEIDVENHDRINISNNLQKALTVKTNDELMVIYISNLVRSIIA 287          
BLAST of CX671535 vs. ExPASy Swiss-Prot
Match: RPN8_SCHPO (26S proteasome regulatory subunit rpn8 OS=Schizosaccharomyces pombe GN=rpn8 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.567e-11
Identity = 39/94 (41.49%), Postives = 56/94 (59.57%), Query Frame = -2
Query:  513 YLDLFIDEKLPLNHEILYHLQDVFNLLPNLNVAELI----------KAFSVKTNDMMLVIYLSSLIRSVIALHXXXXXXXXXKEHEKTEDAKPT 764
            YL   +D +LP+NH IL  LQ VFNLLPN+    ++          +AF+V +ND ++ IY+SS++R+VIALH         K  E+ +D KPT
Sbjct:  218 YLRKVVDGQLPINHAILAELQSVFNLLPNIFSGPVVSEQALESEAQRAFNVNSNDQLMSIYISSIVRAVIALHDLLDSLAASKAMEQ-QDIKPT 310          
The following BLAST results are available for this feature:
BLAST of CX671535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PSD7_ARATH1.016e-3177.78Probable 26S proteasome non-ATPase regulatory subu... [more]
PSD7_BOVIN6.391e-1853.7526S proteasome non-ATPase regulatory subunit 7 OS=... [more]
PSD7_HUMAN3.172e-1753.1626S proteasome non-ATPase regulatory subunit 7 OS=... [more]
PSD7_MOUSE4.143e-1753.1626S proteasome non-ATPase regulatory subunit 7 OS=... [more]
PSD7_DICDI4.580e-1647.8326S proteasome non-ATPase regulatory subunit 7 OS=... [more]
PSD7_DROME9.550e-1453.9726S proteasome non-ATPase regulatory subunit 7 OS=... [more]
RPN8_NEUCR6.190e-1343.1626S proteasome regulatory subunit rpn-8 OS=Neurosp... [more]
RPN8_YEAST2.601e-1148.7226S proteasome regulatory subunit RPN8 OS=Saccharo... [more]
RPN8_SCHPO7.567e-1141.4926S proteasome regulatory subunit rpn8 OS=Schizosa... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_11F07_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11F07-L13-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671535 ID=CX671535; Name=CX671535; organism=Citrus sinensis; type=EST; length=768bp
GGCTTCTTTCTATTCAATCCTTACTAATTAAAAGAAACTGTAAGAAGCAG
CCGTGTAGCAAGCCTTCGGTGACTAAATCTGCTAGTATCGAAATCCAAAA
GATGCAAAGGGTCGACATACTTTGTAGCTAAAAAAACCGTCTAAAAATAC
AGCAACCACACAATGTTTGGAATCTAATTTAAATTGGTATTTTAACATGA
TTTAGACAGGCAAGAAATATGTAATCCTTCAGCATCAAAATAAACATTTG
GAAAAATAAAGAAAAATGAACAGCAAAAAGGGGTATGAATCGCAAGCTTT
TTGGAGCACAGTTATCTCTGATGATGCTCAGTAGAAGAAAACTGTCGGCA
AATGTCACCTCTCACGTGCAACATACAACTGGCTCCACCTAATGACACAC
TCCCCCAACCCCACCACCTCTCTTCCATTTTCAAAAGCCCCAGTTCTGTA
ATGGCCCAGAGCCCCAAAGCACAACAAACTTGATTTTAACTTGAGCTGGC
AGTCGGAACTGCTGTTGGCTTTGCGTCCTCAGTCTTTTCGTGTTCTTTGT
TCAAAATCTTGTTGTTGATTAAGTTATGCAGTGCAATAACACTCCGGATC
AGGGACGAAAGATATATAACCAGCATCATATCATTTGTTTTTACTGAAAA
GGCCTTGATTAATTCAGCCACATTCAGATTCGGTAAAAGGTTAAACACAT
CCTGTAAATGGTACAGTATCTCGTGATTCAACGGAAGTTTCTCATCAATA
AACAGGTCAAGGTAACCA
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