CX671530

Overview
NameCX671530
Unique NameCX671530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7316 contig Csv1_Contig7316:429..1183. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671530 vs. ExPASy Swiss-Prot
Match: FLA10_ARATH (Fasciclin-like arabinogalactan protein 10 OS=Arabidopsis thaliana GN=FLA10 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.568e-45
Identity = 102/184 (55.43%), Postives = 115/184 (62.50%), Query Frame = 2
Query:    2 DLTKLTNAEVVSLLQYHAANGYNPVGTLKTTKGSISTLATNGAGKFDLTVTTAGDSVTLHTGVDSSRLADTVLDSTPLAIFTVDNVLLPTELFGKAPSPAPAGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAPADAPGSVENSTTDNAAFHVNAPALFAVLVTVVCSFLL 553
            DLT LT AEVVSLL+YHA   Y P G+LKT K +ISTLATNGAGK+DLT +T+GD V LHTGV  SRLADTV+D TP+ IFTVDNVLLP ELFGK+ SPAPA E                                        GAP+D+P S ENS   NAAFHVNAPALF  LVT+  + LL
Sbjct:  241 DLTNLTQAEVVSLLEYHALAEYKPKGSLKTNKDAISTLATNGAGKYDLTTSTSGDEVILHTGVGPSRLADTVVDETPVVIFTVDNVLLPAELFGKSSSPAPAPEPVSAPTPTPAKSPSPVEAPSPTAASPPAPPVDESSPE---GAPSDSPTSSENSNAKNAAFHVNAPALFTALVTIAATSLL 421          
BLAST of CX671530 vs. ExPASy Swiss-Prot
Match: FLA8_ARATH (Fasciclin-like arabinogalactan protein 8 OS=Arabidopsis thaliana GN=FLA8 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.384e-40
Identity = 96/180 (53.33%), Postives = 110/180 (61.11%), Query Frame = 2
Query:    2 DLTKLTNAEVVSLLQYHAANGYNPVGTLKTTKGSISTLATNGAGKFDLTVTTAGDSVTLHTGVDSSRLADTVLDSTPLAIFTVDNVLLPTELFG--KAPSPAPAGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAPADAPGSVENSTTDNAAFHVNAPALFAVLVTV 535
            DLTKLT AEVVSLL+YHA   Y P G+LKT K +ISTLATNGAGKFDLT +T+GD V LHTGV  SRLADTVLD+TP+ IFTVDNVLLP ELFG  K+PSPAPA E                                         AP+D+P    NS + NAA  V+ P+LF  LVT+
Sbjct:  240 DLTKLTQAEVVSLLEYHALAEYKPKGSLKTNKNNISTLATNGAGKFDLTTSTSGDEVILHTGVAPSRLADTVLDATPVVIFTVDNVLLPAELFGKSKSPSPAPAPEPVTAPTPSPADAPSPTAASPPAPPTDESPE----------SAPSDSPTGSANSKSANAAVGVSTPSLFTALVTI 409          
BLAST of CX671530 vs. ExPASy Swiss-Prot
Match: FLA1_ARATH (Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana GN=FLA1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.998e-16
Identity = 46/104 (44.23%), Postives = 66/104 (63.46%), Query Frame = 2
Query:   14 LTNAEVVSLLQYHAANGYNPVGTLKTTKGSISTLATNGAGKFDLTVTTAGDSVTLHTGVDSSRLADTVLDSTPLAIFTVDNVLLPTELFG----KAPSPAPAGE 313
            LT  +  + L + A   Y  +  LK+  G ++TLAT+GA KF+LTV   G+ VTL T +++ ++ DT++D  PLAI+  D VLLP ELF     +AP+PAPA E
Sbjct:  241 LTAPKKEAFLDFLAVPTYYSMAMLKSNNGPMNTLATDGANKFELTVQNDGEKVTLKTRINTVKIVDTLIDEQPLAIYATDKVLLPKELFKASAVEAPAPAPAPE 344          
BLAST of CX671530 vs. ExPASy Swiss-Prot
Match: FLA2_ARATH (Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana GN=FLA2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.526e-13
Identity = 37/98 (37.76%), Postives = 58/98 (59.18%), Query Frame = 2
Query:   14 LTNAEVVSLLQYHAANGYNPVGTLKTTKGSISTLATNGAGKFDLTVTTAGDSVTLHTGVDSSRLADTVLDSTPLAIFTVDNVLLPTELFGKAPSPAPA 307
            L+ A   +L+ YH    Y  +  L++  G+++TLAT G  KFD TV   G+ VTL T V ++++  T+ D  PL ++ +D VLLP E++    + APA
Sbjct:  244 LSPANKTALVLYHGMPVYQSLQMLRSGNGAVNTLATEGNNKFDFTVQNDGEDVTLETDVVTAKVMGTLKDQEPLIVYKIDKVLLPREIYKAVKTSAPA 341          
BLAST of CX671530 vs. ExPASy Swiss-Prot
Match: FLA11_ARATH (Fasciclin-like arabinogalactan protein 11 OS=Arabidopsis thaliana GN=FLA11 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.134e-11
Identity = 38/104 (36.54%), Postives = 61/104 (58.65%), Query Frame = 2
Query:    5 LTKLTNAEVVSLLQYHAANGYNPVGTLKTTKGSISTLATNGA-GKFDLTVTTAGDSVTLHTGVDSSRLADTVLDSTPLAIFTVDNVLLPTELFGKAPSPAPAGE 313
            L  L++ + V L+Q+H       +   +T    + T A +G  GKF L +T++G+ V + TGV S+ +A++V     LA++ VD VLLP  +FG + +PAPA E
Sbjct:   93 LNSLSDQQKVQLVQFHVLPTLITMPQFQTVSNPLRTQAGDGQNGKFPLNITSSGNQVNITTGVVSATVANSVYSDKQLAVYQVDQVLLPLAMFGSSVAPAPAPE 196          
The following BLAST results are available for this feature:
BLAST of CX671530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
FLA10_ARATH1.568e-4555.43Fasciclin-like arabinogalactan protein 10 OS=Arabi... [more]
FLA8_ARATH3.384e-4053.33Fasciclin-like arabinogalactan protein 8 OS=Arabid... [more]
FLA1_ARATH1.998e-1644.23Fasciclin-like arabinogalactan protein 1 OS=Arabid... [more]
FLA2_ARATH3.526e-1337.76Fasciclin-like arabinogalactan protein 2 OS=Arabid... [more]
FLA11_ARATH1.134e-1136.54Fasciclin-like arabinogalactan protein 11 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_11F04_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11F04-L7-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671530 ID=CX671530; Name=CX671530; organism=Citrus sinensis; type=EST; length=755bp
TGATCTGACCAAGCTCACAAATGCCGAGGTGGTCTCCCTCTTACAGTATC
ATGCAGCTAACGGCTACAATCCAGTGGGGACATTGAAGACTACTAAAGGC
TCGATCTCCACATTGGCCACTAACGGTGCAGGAAAGTTCGATCTGACTGT
GACGACAGCCGGTGACTCGGTCACTCTTCACACAGGAGTCGACTCGTCGA
GACTCGCCGACACGGTGCTTGACTCAACGCCGTTGGCCATTTTCACTGTT
GACAATGTGCTTTTGCCAACTGAGTTGTTCGGAAAGGCGCCCTCTCCAGC
TCCAGCGGGTGAGCCGGTGGCTGCTCCGTCTCCCGCTCCAACCGTTGCTT
CTCCCGGTCCTGCTCCAGTGACCGTCGAGGCGCCATCACCTTCGGCTGCC
TCACCTCCGGCTCCGCTGACGGAGACGCCTGGGGGAGCGCCAGCTGACGC
GCCGGGCTCAGTGGAGAATAGCACCACCGACAATGCTGCTTTTCACGTGA
ATGCTCCAGCATTGTTCGCTGTACTCGTTACGGTCGTTTGTTCGTTTCTC
TTGTCCTGATTGGTAATTACGCAAGTCTGTTAATTTTTTTTTTTTTTCTC
CTTTTGTTGTTATTAGAGATTAGAGAGGTTTATTTTTAATTTATTTGGGA
TTTTAATTTATGGGATGAGACGGTGCGCATTTTTAGCAGCAATGGAGAGT
GACGAGTGAGTGAGAGTGAGAACAGTGGGGTTTGTCGATTGTTGATGTTT
GTTGC
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