CX671529

Overview
NameCX671529
Unique NameCX671529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7316 contig Csv1_Contig7316:581..1307. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX671529 vs. ExPASy Swiss-Prot
Match: FLA10_ARATH (Fasciclin-like arabinogalactan protein 10 OS=Arabidopsis thaliana GN=FLA10 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.293e-25
Identity = 66/133 (49.62%), Postives = 74/133 (55.64%), Query Frame = -3 
Query:  325 TAGDSVTLHTGVDSSRLADTVLDSTPLAIFTVDNVLLPTELFGKAPSPAPAGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGGAPADAPGSVENSTTDNAAFHVNAPALFAVLVTVVCSFLL 723
            T+GD V LHTGV  SRLADTV+D TP+ IFTVDNVLLP ELFGK+ SPAPA E                                        GAP+D+P S ENS   NAAFHVNAPALF  LVT+  + LL
Sbjct:  292 TSGDEVILHTGVGPSRLADTVVDETPVVIFTVDNVLLPAELFGKSSSPAPAPEPVSAPTPTPAKSPSPVEAPSPTAASPPAPPVDESSPE---GAPSDSPTSSENSNAKNAAFHVNAPALFTALVTIAATSLL 421
[Close]
BLAST of CX671529 vs. ExPASy Swiss-Prot
Match: FLA8_ARATH (Fasciclin-like arabinogalactan protein 8 OS=Arabidopsis thaliana GN=FLA8 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.978e-18
Identity = 58/129 (44.96%), Postives = 68/129 (52.71%), Query Frame = -3 
Query:  343 TAGDSVTLHTGVDSSRLADTVLDSTPLAIFTVDNVLLPTELFG--KAPSPAPAGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGGAPADAPGSVENSTTDNAAFHVNAPALFAVLVTV 723
            T+GD V LHTGV  SRLADTVLD+TP+ IFTVDNVLLP ELFG  K+PSPAPA E                                         AP+D+P    NS + NAA  V+ P+LF  LVT+
Sbjct:  291 TSGDEVILHTGVAPSRLADTVLDATPVVIFTVDNVLLPAELFGKSKSPSPAPAPEPVTAPTPSPADAPSPTAASPPAPPTDESPE----------SAPSDSPTGSANSKSANAAVGVSTPSLFTALVTI 409
The following BLAST results are available for this feature:
BLAST of CX671529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FLA10_ARATH8.293e-2549.62Fasciclin-like arabinogalactan protein 10 OS=Arabi... [more]
FLA8_ARATH1.978e-1844.96Fasciclin-like arabinogalactan protein 8 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_11F04_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11F04-L7-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671529 ID=CX671529; Name=CX671529; organism=Citrus sinensis; type=EST; length=725bp
TTTTTTTTTTTTTTTTTAAAATAACAAATTAAAATAATAGAATGCGTTAC
ACCTTGAAAACCAAACAACACTAACAAAAACAAAAAAAGTAAAAATAGAA
ATTAAAAAAATAAAAAAAAACTGCAACAAACATCAACAATCGACAAACCC
CACTGTTCTCACTCTCACTCACTCGTCACTCTCCATTGCTGCTAAAAATG
CGCACCGTCTCATCCCATAAATTAAAATCCCAAATAAATTAAAAATAAAC
CTCTCTAATCTCTAATAACAACAAAAGGAGAAAAAAAAAAAAAATTAACA
GACTTGCGTAATTACCAATCAGGACAAGAGAAACGAACAAACGACCGTAA
CGAGTACAGCGAACAATGCTGGAGCATTCACGTGAAAAGCAGCATTGTCG
GTGGTGCTATTCTCCACTGAGCCCGGCGCGTCAGCTGGCGCTCCCCCAGG
CGTCTCCGTCAGCGGAGCCGGAGGTGAGGCAGCCGAAGGTGATGGCGCCT
CGACGGTCACTGGAGCAGGACCGGGAGAAGCAACGGTTGGAGCGGGAGAC
GGAGCAGCCACCGGCTCACCCGCTGGAGCTGGAGAGGGCGCCTTTCCGAA
CAACTCAGTTGGCAAAAGCACATTGTCAACAGTGAAAATGGCCAACGGCG
TTGAGTCAAGCACCGTGTCGGCGAGTCTCGACGAGTCGACTCCTGTGTGA
AGAGTGACCGAGTCACCGGCTGTCG
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