CX671525

Overview
NameCX671525
Unique NameCX671525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX671525 vs. ExPASy Swiss-Prot
Match: AGD5_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.992e-42
Identity = 118/282 (41.84%), Postives = 153/282 (54.26%), Query Frame = 2 
Query:    2 SPPRGLEEKASIHWQRPGEKSGHGYTDNSENLSEERKHVQAPSTKDSVPAARIGLPLPPRGPDQVVAITKPQQ-TESTVAPAGATNQSSDANLAVPPPKVDFASDLFNMLSGD----SPXXXXXXXXXXXXXLWAGFQSAVETSTAEKKDSTKAVESS--PQSATGIEDLFKDSPSLATPSSSEKPQKDLKNDIMSLFEKSNMVSPFXXXXXXXXXXXXXXXXXXXXXXKSGGDPKFSSSFQLPVSNGTNLPS-NFGN----QIPGIMMPGAGTADLQKLMQ 811
            SPPR +E++     +R G    HG++ +  NL EERK + A  T+++V A RI LP+PP+GP QV+   KPQQ  ES   P     Q+ +   A  PPKVDFA+DLFNMLS D    +               WAGFQSA    TAEK  + K  ESS  P S++  EDLFKD+P+L T    ++  KD+K DIMSLFEK+N+VSPF                       +GG P  +   Q  ++N  N+ S N+ N    QIPG+  P  G ADLQKLMQ
Sbjct:  131 SPPR-VEQERRKSVERSGPGYEHGHSSSPVNLFEERKTIPASRTRNNVAATRINLPVPPQGPSQVI---KPQQKMESAATPVEREKQAVNVAPASDPPKVDFATDLFNMLSMDDSTTNTSEATPGDTPADDNSWAGFQSAGSGQTAEKIVTAKPAESSSPPASSSDFEDLFKDTPNLTT----QQAPKDVKGDIMSLFEKTNIVSPFAMHQQQVAMLAQQQALYMAAAKAAGGTP--NGVNQQAIANALNVASANWSNPGGYQIPGMTNPVGGQADLQKLMQ 402
The following BLAST results are available for this feature:
BLAST of CX671525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AGD5_ARATH6.992e-4241.84Probable ADP-ribosylation factor GTPase-activating... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_11F01_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11F01-L1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671525 ID=CX671525; Name=CX671525; organism=Citrus sinensis; type=EST; length=816bp
ATCACCTCCTAGAGGGCTGGAGGAGAAGGCTTCTATTCATTGGCAGAGAC
CTGGGGAAAAGAGTGGGCATGGTTACACTGATAATTCTGAAAACTTATCT
GAGGAAAGGAAGCATGTTCAAGCTCCAAGTACAAAAGATAGTGTTCCTGC
TGCAAGAATTGGTCTTCCACTTCCACCTAGAGGACCTGATCAGGTTGTTG
CCATTACAAAGCCTCAACAAACGGAATCAACAGTGGCACCAGCTGGGGCA
ACAAATCAGTCTTCAGATGCTAATCTTGCAGTACCTCCACCCAAAGTTGA
TTTTGCTTCTGACCTTTTCAACATGCTATCTGGAGACAGTCCAAATGAAA
ATAGCTCTGAGGCTGCTTCTGCGGATGATAATCTTTGGGCAGGTTTCCAG
TCTGCTGTAGAAACATCGACAGCAGAGAAAAAAGATTCAACCAAAGCAGT
AGAAAGTAGTCCCCAGTCTGCCACAGGAATTGAGGACTTATTTAAAGATT
CACCATCTCTTGCAACTCCCTCAAGTTCAGAGAAACCCCAGAAAGATTTG
AAAAATGACATTATGAGCCTTTTTGAGAAGTCCAATATGGTGTCGCCATT
TGCTATGCATCAACAGCAACTCACTATGTTGGCACAGCAACAGTCCCTCT
TGATGGCTGCTGCTGCAAAATCTGGCGGGGATCCAAAATTTTCTAGCAGC
TTCCAACTACCTGTGTCTAATGGTACAAACCTTCCCTCAAACTTTGGTAA
CCAAATTCCTGGCATCATGATGCCAGGTGCTGGAACAGCTGATCTGCAAA
AACTCATGCAGGCTAT
back to top