CX671520

Overview
NameCX671520
Unique NameCX671520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671520 vs. ExPASy Swiss-Prot
Match: RR9_ARATH (30S ribosomal protein S9, chloroplastic OS=Arabidopsis thaliana GN=RPS9 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 2.228e-67
Identity = 127/137 (92.70%), Postives = 131/137 (95.62%), Query Frame = -3
Query:  197 SRLPGGFAAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 607
            SRLPGGFAAQ I GTGRRKCAIARVVLQEGTGK IINYRDAKEYLQGNPLWLQY+KVPLVTLGYE SYD+FVKAHGGGLSGQAQAITLGVARALLKVS DHRSPLKKEGLLTRD+RVVERKKAGL KARKAPQ+SKR
Sbjct:   72 SRLPGGFAAQKIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLVTLGYENSYDIFVKAHGGGLSGQAQAITLGVARALLKVSADHRSPLKKEGLLTRDARVVERKKAGLKKARKAPQFSKR 208          
BLAST of CX671520 vs. ExPASy Swiss-Prot
Match: RR9_SPIOL (30S ribosomal protein S9, chloroplastic (Fragment) OS=Spinacia oleracea GN=PRPS9 PE=1 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 7.167e-66
Identity = 122/137 (89.05%), Postives = 130/137 (94.89%), Query Frame = -3
Query:  197 SRLPGGFAAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 607
            SRLPGGFAAQT+ GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQY+K PL TLGYET+YDVFVKAHGGGLSGQAQAI+LGVARALLKVS  HR+PLK+EGLLTRDSR+VERKK GL KARKAPQ+SKR
Sbjct:   61 SRLPGGFAAQTVIGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYVKTPLATLGYETNYDVFVKAHGGGLSGQAQAISLGVARALLKVSASHRAPLKQEGLLTRDSRIVERKKPGLKKARKAPQFSKR 197          
BLAST of CX671520 vs. ExPASy Swiss-Prot
Match: RS9_NOSP7 (30S ribosomal protein S9 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rpsI PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.557e-36
Identity = 78/125 (62.40%), Postives = 91/125 (72.80%), Query Frame = -3
Query:  197 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 571
            +GTGRRK A+ARV L  GTG+  +N +D   Y Q NP +L  IK PL TLG E  YD+ VKA GGGL+GQA ++ LGVARAL ++  D+R PLK EG LTRD R  ERKK GLHKARKAPQYSKR
Sbjct:   14 WGTGRRKNAVARVRLVPGTGQLTVNGKDGNLYFQFNPNYLGVIKAPLETLGLENEYDILVKAEGGGLTGQADSVRLGVARALCQLDPDNRPPLKTEGYLTRDPRAKERKKYGLHKARKAPQYSKR 138          
BLAST of CX671520 vs. ExPASy Swiss-Prot
Match: RS9_THEEB (30S ribosomal protein S9 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpsI PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.469e-36
Identity = 76/124 (61.29%), Postives = 93/124 (75.00%), Query Frame = -3
Query:  197 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 568
            GTGRRK A+ARV L  G+G+  IN R+  +YLQ NP++L  +K PL TLG E SYD++V A GGGL+GQA AI LG+ARAL ++  ++R PLK EG LTRD R  ER+K GL KARKAPQYSKR
Sbjct:   14 GTGRRKSAVARVRLIPGSGQLWINGRNGADYLQNNPIYLNLVKAPLETLGLENSYDIYVNATGGGLTGQADAIRLGIARALCQLDIENRKPLKTEGYLTRDPRAKERRKYGLRKARKAPQYSKR 137          
BLAST of CX671520 vs. ExPASy Swiss-Prot
Match: RS9_SYNP2 (30S ribosomal protein S9 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rpsI PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.318e-35
Identity = 75/125 (60.00%), Postives = 92/125 (73.60%), Query Frame = -3
Query:  197 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 571
            +GTGRRK +IARV L  G+GK ++N R  ++Y    P +L  +K PL TLG E+ YD+ V AHGGGL+GQA A+ LGVARAL ++  D+R PLK EG LTRD R  ERKK GLHKARKAPQ+SKR
Sbjct:   13 WGTGRRKASIARVRLVPGSGKVVVNNRSGEDYFNRIPGYLAVLKSPLETLGLESEYDILVNAHGGGLTGQADAVKLGVARALCELDPDNRQPLKIEGYLTRDPRCKERKKYGLHKARKAPQFSKR 137          
BLAST of CX671520 vs. ExPASy Swiss-Prot
Match: RS9_SYNJA (30S ribosomal protein S9 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rpsI PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.937e-35
Identity = 79/125 (63.20%), Postives = 88/125 (70.40%), Query Frame = -3
Query:  197 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 571
            +GTGRRK A+ARV L  GTGK IIN R   +YLQ     L  +K PL  LG E SYD+ V+AHGGG+ GQA AI LGVARAL +V   +R PLK EG L RD R VERKK GL KARKAPQYSKR
Sbjct:   13 WGTGRRKTAVARVRLVPGTGKLIINDRPGDQYLQYQEALLASVKAPLELLGLENSYDILVRAHGGGVHGQADAIKLGVARALCEVDPANRGPLKTEGYLKRDPRAVERKKYGLRKARKAPQYSKR 137          
BLAST of CX671520 vs. ExPASy Swiss-Prot
Match: RS9_MICAN (30S ribosomal protein S9 OS=Microcystis aeruginosa (strain NIES-843) GN=rpsI PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.937e-35
Identity = 75/125 (60.00%), Postives = 90/125 (72.00%), Query Frame = -3
Query:  197 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 571
            +GTGRRK A+A V L  GTG   +N RD + +    P ++Q IK PL TLG E  YD+ VKA GGGL+GQA A+ LGVARAL +++ ++R PLK EG LTRD R  ERKK GLHKARKAPQYSKR
Sbjct:   13 WGTGRRKSAVAAVRLVPGTGAITVNGRDGETHFNRIPTYIQTIKAPLETLGLENEYDIIVKAEGGGLTGQADAVKLGVARALCQLAPENRPPLKSEGYLTRDPRAKERKKYGLHKARKAPQYSKR 137          
BLAST of CX671520 vs. ExPASy Swiss-Prot
Match: RS9_CYAA5 (30S ribosomal protein S9 OS=Cyanothece sp. (strain ATCC 51142) GN=rpsI PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.937e-35
Identity = 76/125 (60.80%), Postives = 91/125 (72.80%), Query Frame = -3
Query:  197 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 571
            +GTGRRK A+ARV L  G+G+ I+N +    Y    P +LQ IK PL TLG E  YD+ V AHGGGL+GQA A+ LGVARAL +++ ++R PLK EG LTRD R  ERKK GLHKARKAPQYSKR
Sbjct:   13 WGTGRRKSAVARVRLVPGSGEIIVNKKPGNIYFNRIPDYLQAIKGPLETLGLENDYDILVNAHGGGLTGQADAVKLGVARALCELAPENRPPLKAEGYLTRDPRAKERKKYGLHKARKAPQYSKR 137          
BLAST of CX671520 vs. ExPASy Swiss-Prot
Match: RS9_ANAVT (30S ribosomal protein S9 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpsI PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.009e-35
Identity = 76/125 (60.80%), Postives = 90/125 (72.00%), Query Frame = -3
Query:  197 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 571
            +GTGRRK A+ARV L  GTG+ I+N +    Y Q N  +L  IK PL TLG E  YD+ VKA GGGL+GQA ++ LGVARAL ++  ++R PLK EG LTRD R  ERKK GLHKARKAPQYSKR
Sbjct:   14 WGTGRRKSAVARVRLVPGTGQLIVNGKPGDLYFQFNANYLGVIKAPLETLGLENEYDILVKAEGGGLTGQADSVRLGVARALCQLDPENRPPLKTEGYLTRDPRAKERKKYGLHKARKAPQYSKR 138          
BLAST of CX671520 vs. ExPASy Swiss-Prot
Match: RS9_ANASP (30S ribosomal protein S9 OS=Anabaena sp. (strain PCC 7120) GN=rpsI PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.009e-35
Identity = 76/125 (60.80%), Postives = 90/125 (72.00%), Query Frame = -3
Query:  197 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 571
            +GTGRRK A+ARV L  GTG+ I+N +    Y Q N  +L  IK PL TLG E  YD+ VKA GGGL+GQA ++ LGVARAL ++  ++R PLK EG LTRD R  ERKK GLHKARKAPQYSKR
Sbjct:   14 WGTGRRKSAVARVRLVPGTGQLIVNGKPGDLYFQFNANYLGVIKAPLETLGLENEYDILVKAEGGGLTGQADSVRLGVARALCQLDPENRPPLKTEGYLTRDPRAKERKKYGLHKARKAPQYSKR 138          
The following BLAST results are available for this feature:
BLAST of CX671520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR9_ARATH2.228e-6792.7030S ribosomal protein S9, chloroplastic OS=Arabido... [more]
RR9_SPIOL7.167e-6689.0530S ribosomal protein S9, chloroplastic (Fragment)... [more]
RS9_NOSP71.557e-3662.4030S ribosomal protein S9 OS=Nostoc punctiforme (st... [more]
RS9_THEEB3.469e-3661.2930S ribosomal protein S9 OS=Thermosynechococcus el... [more]
RS9_SYNP21.318e-3560.0030S ribosomal protein S9 OS=Synechococcus sp. (str... [more]
RS9_SYNJA2.937e-3563.2030S ribosomal protein S9 OS=Synechococcus sp. (str... [more]
RS9_MICAN2.937e-3560.0030S ribosomal protein S9 OS=Microcystis aeruginosa... [more]
RS9_CYAA52.937e-3560.8030S ribosomal protein S9 OS=Cyanothece sp. (strain... [more]
RS9_ANAVT5.009e-3560.8030S ribosomal protein S9 OS=Anabaena variabilis (s... [more]
RS9_ANASP5.009e-3560.8030S ribosomal protein S9 OS=Anabaena sp. (strain P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11E11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11E11-J21-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671520 ID=CX671520; Name=CX671520; organism=Citrus sinensis; type=EST; length=831bp
TTTTTTTTTTTTTTTTTAATGAAATATTTTGGACAACTTTAACCATCTAT
CAAAAATGGTTTATGATTCCATGATACCCTGAACTGAAGTACAAAACTCC
AAACATAAAATGTTAAACCAAAAAAAAATTGTTCAGAGATACAAGCAGAA
AATAGATCTACAGGTAACAGTCCATCACACTGTAATTCTGGCCTCAACGT
TTGGAATATTGTGGGGCTTTCCGGGCTTTATGGAGTCCAGCTTTTTTCCT
CTCTACTACTCTGGAATCTCTGGTCAGAAGGCCTTCCTTTTTCAGAGGGG
ATCTATGGTCCTGGCTCACCTTCAACAATGCACGAGCAACGCCGAGTGTT
ATTGCTTGAGCTTGACCAGAGAGGCCGCCACCATGAGCTTTCACAAAAAC
ATCATAGCTAGTTTCATAACCCAAAGTTACCAAAGGGACTTTTATATACT
GTAGCCATAGTGGATTGCCTTGAAGATATTCCTTGGCATCGCGGTAGTTG
ATGATGAATTTGCCGGTGCCTTCTTGGAGGACGACACGAGCAATGGCGCA
TTTCCGACGGCCCGTTCCAAAAATAGTTTGAGCCGCAAAGCCACCGGGAA
GCCTCGATTTGACGTATTTCTTGAGGTCAGTTGTTTTTTTTTTTTTTTTA
CCGTAAACAACATGGTACGAGAAAAGCCTTCAATTGCTTATCACTTCTTT
AATTGGAAGGGGTATCCAGTTGAAGAGGCATCTTACAAATATATGCCTAA
CATAAATGAGAAGTTTTTCTTTCTCTGGGGACTGAGACTTACAAATTGAT
ATCCCTTTCAGTTTTAAGATAATAAAGCATC
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