CX671516

Overview
NameCX671516
Unique NameCX671516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671516_ssr439 microsatellite CX671516_ssr439:439..450. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX671516 vs. ExPASy Swiss-Prot
Match: KPK19_ARATH (Serine/threonine-protein kinase AtPK19 OS=Arabidopsis thaliana GN=ATPK19 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 6.931e-33
Identity = 64/99 (64.65%), Postives = 77/99 (77.78%), Query Frame = -2
Query:  173 LLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWTNMPLLDSPVASPKFN--ENPFKGFTYVRPAASFLQRNT 463
            LLQKE  +RLGSGP G++EIK HKWFK INWKKLEARE +PSF P V+G+ C+ANF++CWT+M +LDSP +SP  +   NPF  FTYVRP  SFL R T
Sbjct:  370 LLQKEPERRLGSGPSGAEEIKKHKWFKAINWKKLEAREVQPSFKPAVSGRQCIANFDKCWTDMSVLDSPASSPNSDAKANPFTNFTYVRPPHSFLHRTT 468          
BLAST of CX671516 vs. ExPASy Swiss-Prot
Match: KPK1_ARATH (Serine/threonine-protein kinase AtPK1/AtPK6 OS=Arabidopsis thaliana GN=ATPK1 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.001e-31
Identity = 63/99 (63.64%), Postives = 77/99 (77.78%), Query Frame = -2
Query:  173 LLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWTNMPLLDSPVASPKFN--ENPFKGFTYVRPAASFLQRNT 463
            LLQKE  +RLGSG  G++EIK HKWFK INWKKLEARE  PSF PEV+G+ C+ANF++CWT+M +LDSP +SP  +   NPF  FTYVRP  SFL ++T
Sbjct:  364 LLQKEPERRLGSGLSGAEEIKQHKWFKGINWKKLEAREVMPSFKPEVSGRQCIANFDKCWTDMSVLDSPASSPSSDPKANPFTNFTYVRPPPSFLHQST 462          
BLAST of CX671516 vs. ExPASy Swiss-Prot
Match: KS6A5_CHICK (Ribosomal protein S6 kinase alpha-5 OS=Gallus gallus GN=RPS6KA5 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.040e-12
Identity = 37/93 (39.78%), Postives = 56/93 (60.22%), Query Frame = -2
Query:  188 QLLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWTNMPLLDSPVASPKFNENPFKGFTYVRPAASF 466
            +LL K+  KRLG GP  + EIK H +F+ INW  L A++    F P +  +  V+NF E +T M    SP A+P+ +E  F+G+++V P+  F
Sbjct:  282 RLLMKDPKKRLGCGPTDADEIKQHPFFQNINWDDLAAKKVPAPFKPVIRDELDVSNFAEEFTEMDPTYSPAATPQTSEKIFQGYSFVAPSILF 374          
BLAST of CX671516 vs. ExPASy Swiss-Prot
Match: KS6A5_HUMAN (Ribosomal protein S6 kinase alpha-5 OS=Homo sapiens GN=RPS6KA5 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.318e-12
Identity = 37/93 (39.78%), Postives = 55/93 (59.14%), Query Frame = -2
Query:  188 QLLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWTNMPLLDSPVASPKFNENPFKGFTYVRPAASF 466
            +LL K+  KRLG GP  + EIK H +F+ INW  L A++    F P +  +  V+NF E +T M    SP A P+ +E  F+G+++V P+  F
Sbjct:  292 RLLMKDPKKRLGCGPRDADEIKEHLFFQKINWDDLAAKKVPAPFKPVIRDELDVSNFAEEFTEMDPTYSPAALPQSSEKLFQGYSFVAPSILF 384          
BLAST of CX671516 vs. ExPASy Swiss-Prot
Match: KPCA_MOUSE (Protein kinase C alpha type OS=Mus musculus GN=Prkca PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 2.318e-12
Identity = 36/91 (39.56%), Postives = 59/91 (64.84%), Query Frame = -2
Query:  200 LLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWT-NMPLLDSP--VASPKFNENPFKGFTYVRP 463
            L+ K+ +KRLG GP G ++++ H +F+ I+W+KLE RE +P F P+V GK    NF++ +T   P+L  P  +     +++ F+GF+YV P
Sbjct:  572 LMTKQPAKRLGCGPEGERDVREHAFFRRIDWEKLENREIQPPFKPKVCGKG-AENFDKFFTRGQPVLTPPDQLVIANIDQSDFEGFSYVNP 661          
BLAST of CX671516 vs. ExPASy Swiss-Prot
Match: KS6A5_PONAB (Ribosomal protein S6 kinase alpha-5 OS=Pongo abelii GN=RPS6KA5 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.027e-12
Identity = 37/92 (40.22%), Postives = 54/92 (58.70%), Query Frame = -2
Query:  188 LLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWTNMPLLDSPVASPKFNENPFKGFTYVRPAASF 463
            LL K+  KRLG GP  + EIK H +F+ INW  L A++    F P +  +  V+NF E +T M    SP A P+ +E  F+G+++V P+  F
Sbjct:  293 LLMKDPKKRLGCGPRDADEIKEHLFFQKINWDDLAAKKVPAPFKPVIRDELDVSNFAEEFTEMDPTYSPAALPQSSEKLFQGYSFVAPSILF 384          
BLAST of CX671516 vs. ExPASy Swiss-Prot
Match: KPCA_RAT (Protein kinase C alpha type OS=Rattus norvegicus GN=Prkca PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 3.954e-12
Identity = 36/91 (39.56%), Postives = 58/91 (63.74%), Query Frame = -2
Query:  200 LLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWT-NMPLLDSP--VASPKFNENPFKGFTYVRP 463
            L+ K  +KRLG GP G ++++ H +F+ I+W+KLE RE +P F P+V GK    NF++ +T   P+L  P  +     +++ F+GF+YV P
Sbjct:  572 LMTKHPAKRLGCGPEGERDVREHAFFRRIDWEKLENREIQPPFKPKVCGKG-AENFDKFFTRGQPVLTPPDQLVIANIDQSDFEGFSYVNP 661          
BLAST of CX671516 vs. ExPASy Swiss-Prot
Match: KPCA_HUMAN (Protein kinase C alpha type OS=Homo sapiens GN=PRKCA PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 3.954e-12
Identity = 36/91 (39.56%), Postives = 58/91 (63.74%), Query Frame = -2
Query:  200 LLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWT-NMPLLDSP--VASPKFNENPFKGFTYVRP 463
            L+ K  +KRLG GP G ++++ H +F+ I+W+KLE RE +P F P+V GK    NF++ +T   P+L  P  +     +++ F+GF+YV P
Sbjct:  572 LMTKHPAKRLGCGPEGERDVREHAFFRRIDWEKLENREIQPPFKPKVCGKG-AENFDKFFTRGQPVLTPPDQLVIANIDQSDFEGFSYVNP 661          
BLAST of CX671516 vs. ExPASy Swiss-Prot
Match: KS6A5_MOUSE (Ribosomal protein S6 kinase alpha-5 OS=Mus musculus GN=Rps6ka5 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 5.164e-12
Identity = 37/95 (38.95%), Postives = 56/95 (58.95%), Query Frame = -2
Query:  188 LFQLLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWTNMPLLDSPVASPKFNENPFKGFTYVRPAASF 472
            L +LL K+  KRLG GP  ++EIK H +F+ I W  L A++    F P +  +  V+NF E +T M    SP A P+ +E  F+G+++V P+  F
Sbjct:  289 LQRLLMKDPKKRLGCGPRDAEEIKEHLFFEKIKWDDLAAKKVPAPFKPVIRDELDVSNFAEEFTEMDPTYSPAALPQSSERLFQGYSFVAPSILF 383          
BLAST of CX671516 vs. ExPASy Swiss-Prot
Match: KPCA_BOVIN (Protein kinase C alpha type OS=Bos taurus GN=PRKCA PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 5.164e-12
Identity = 36/91 (39.56%), Postives = 57/91 (62.64%), Query Frame = -2
Query:  200 LLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWT-NMPLLDSP--VASPKFNENPFKGFTYVRP 463
            L+ K   KRLG GP G ++++ H +F+ I+W+KLE RE +P F P+V GK    NF++ +T   P+L  P  +     +++ F+GF+YV P
Sbjct:  572 LMTKHPGKRLGCGPEGERDVREHAFFRRIDWEKLENREIQPPFKPKVCGKG-AENFDKFFTRGQPVLTPPDQLVIANIDQSDFEGFSYVNP 661          
The following BLAST results are available for this feature:
BLAST of CX671516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
KPK19_ARATH6.931e-3364.65Serine/threonine-protein kinase AtPK19 OS=Arabidop... [more]
KPK1_ARATH1.001e-3163.64Serine/threonine-protein kinase AtPK1/AtPK6 OS=Ara... [more]
KS6A5_CHICK1.040e-1239.78Ribosomal protein S6 kinase alpha-5 OS=Gallus gall... [more]
KS6A5_HUMAN2.318e-1239.78Ribosomal protein S6 kinase alpha-5 OS=Homo sapien... [more]
KPCA_MOUSE2.318e-1239.56Protein kinase C alpha type OS=Mus musculus GN=Prk... [more]
KS6A5_PONAB3.027e-1240.22Ribosomal protein S6 kinase alpha-5 OS=Pongo abeli... [more]
KPCA_RAT3.954e-1239.56Protein kinase C alpha type OS=Rattus norvegicus G... [more]
KPCA_HUMAN3.954e-1239.56Protein kinase C alpha type OS=Homo sapiens GN=PRK... [more]
KS6A5_MOUSE5.164e-1238.95Ribosomal protein S6 kinase alpha-5 OS=Mus musculu... [more]
KPCA_BOVIN5.164e-1239.56Protein kinase C alpha type OS=Bos taurus GN=PRKCA... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_11E09_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11E09-J17-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671516 ID=CX671516; Name=CX671516; organism=Citrus sinensis; type=EST; length=899bp
TTTTTTTTTTTTTAAATAAAGATTACATGATATTACTCTCCTTCAACAAT
CTCCATGAATAAGAACATGATTTATTCTCTCTTTCGGTCATAATTCAGCT
ACAAAGAAAACAAATATCCAAGTTTTTCAAGAACCTGCAAACGAGGGGCT
CAAAGGTCCCCTGACAATATCAAGTGTTCCTTTGAAGAAATGATGCAGCA
GGCCTCACATAAGTAAACCCCTTGAACGGATTCTCATTAAATTTTGGACT
GGCAACAGGAGAATCCAGCAATGGCATGTTAGTCCAGCACTCCTCAAAGT
TAGCAACACAATGCTTGCCAGCAACTTCAGGAAGAAAACTTGGCCTAGTT
TCCCGAGCCTCCAATTTCTTCCAATTGATCATCTTGAACCACTTGTGGGA
TTTTATCTCCTGACTGCCACCCGGTCCGCTGCCAAGGCGCTTGCTTGCTT
CTTTCTGCAGCAGCTGGAAGAGGGAGACCAAAAGAAATATTATTCTCAAT
TTCATTACTAATTTTCGTGGACAGACATGCAATGCATCATGGAACATTTT
TGCATTTTTGTCTCACCAGCCTAAAGGATGAAGATTGTAAAGCACTAAAA
TTTAAATTATTTGAGGATGGGATCAAAGACTAATACAAAAGCAAAATAGA
TAAGTGCTTAAATCGTACAACTATTGGATCCCTCAAGGACGTGCCAATTT
TTACCAACGAACTCAACAGATGGAAATTACATGTTCATCTTTTTTTCCAT
TTCTTTTCCTCACTATGACAACTAACTCAACAGATGGAAAGATCATGCTC
ATCTAGAAAGCAAAGGAACAGATATTGACAATAGTGAATTTACCCCTTTT
AAAAGTGAATGTGCTTCACTTGACAAAAACGCAGGCAACTTGATCTTAT
back to top