CX671479
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX671479 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 2.595e-33 Identity = 100/234 (42.74%), Postives = 123/234 (52.56%), Query Frame = 2 Query: 113 SSSTASVLKPLSSMADSTS--LLSPPSIFARNPYFSIHPRPRPIXXXXXXXXXXXXXXXXXXXXTIHF--SSFTTFVAQTSDWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGEDTVVEAGERQXXXXXXXXXXXXXXXXXXXDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDINGRLL 802 SS S LKPL+ MADS+S + S PSI + I + H S F +FVAQTSDWA EE + + D +EG++S+ E EG+ + ER +AKLFVGNL YDV+S+ LAMLFE+AGTVEIAEVIYNRETD+SRGFGFVTMS+V+EAE AVE F+RYD+NGRLL Sbjct: 3 SSIVTSSLKPLA-MADSSSSTIFSHPSISSTISSSRIRSSSVSLLTGRINLPLSFSRVSLSLKTKTHLKKSPFVSFVAQTSDWA--EEGGEGSVAVEETENSLESQDVSEGDESEGDASEGDVSEGDESEGDVSEGAVSERAEFPEPSE------------EAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLL 221 HSP 2 Score: 75.485 bits (184), Expect = 3.896e-13 Identity = 35/71 (49.30%), Postives = 50/71 (70.42%), Query Frame = 2 Query: 590 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDINGRLL 802 +++VGNLP+DVD+ +L LF + G V A V+Y+RET RSRGFGFVTMS V+E +A+ ++ GR + Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAI 315
BLAST of CX671479 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 2.429e-31 Identity = 103/249 (41.37%), Postives = 131/249 (52.61%), Query Frame = 2 Query: 110 MSSSTASVLKPLSSMADSTSLLSPPSIFARN--------PYFSIHPRPRPIXXXXXXXXXXXXXXXXXXXXTIHFS-SFTTFVA----QTSDWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGEDTVVEA-----GERQXXXXXXXXXXXXXXXXXXXDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDINGRLL 802 MS +T ++KP SSMA ++ L+S P +FA PY S +P + +H S +++ + +TS A QEE+ NT I G + G+L ++ EP GE+T E G+ DAKLFVGNLPYDVDSE LA LFE+AG VEIAEVIYNR+TD+SRGFGFVTMSTVEEAEKAVEM++RYD+NGRLL Sbjct: 1 MSCATKPIIKP-SSMATNSCLISLPPLFATTTKSKSFAYPYLSNTLKPIKL---------------------LHLSCTYSPCILSPKKKTSVSALQEEE--NTLIL-----------------DGQGQESGDLFNF-EPSGEETEEEGFVEAVGDAGESDEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLL 207
BLAST of CX671479 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 6.614e-29 Identity = 61/73 (83.56%), Postives = 69/73 (94.52%), Query Frame = 2 Query: 584 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDINGRLL 802 DAKLFVGNLPYD+DSE LA LF++AG VEIAEVIYNRETDRSRGFGFVTMSTVEEA+KAVE++ +YD+NGRLL Sbjct: 96 DAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLL 168
BLAST of CX671479 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.629e-27 Identity = 77/160 (48.12%), Postives = 93/160 (58.13%), Query Frame = 2 Query: 329 VAQTSDWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPE--GEDTVVEAGERQXXXXXXXXXXXXXXXXXXXDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDINGRLL 802 VAQTS+W ++E N + G + EG +S WG ++ VE G+ +AKLFVGNLPYDVDSEKLA +F+ AG VEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE+ + YD++GR L Sbjct: 2 VAQTSEW--EQEGSTNAVLE------------------GESDPEGAVS-WGSETQVSDEGGVEGGQ--------------GFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQL 126 HSP 2 Score: 69.3218 bits (168), Expect = 2.792e-11 Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 2 Query: 590 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDINGR 796 +++VGNLP+DVD+ +L LF + G V A V+ +RET RSRGFGFVTMS+ E A+ ++GR Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGR 218
BLAST of CX671479 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.785e-19 Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = 2 Query: 584 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDINGRLL 802 D KLFVGNLP++VDS +LA LFE AG VE+ EVIY++ T RSRGFGFVTMS+V E E A + F+ Y+++GR L Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPL 162
BLAST of CX671479 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.638e-19 Identity = 47/73 (64.38%), Postives = 57/73 (78.08%), Query Frame = 2 Query: 584 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDINGRLL 802 D KLFVGNLP+ VDS LA LFE+AG VE+ EVIY++ T RSRGFGFVTMST EE E A + F+ Y+I+GR + Sbjct: 86 DLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAI 158
BLAST of CX671479 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 4.751e-19 Identity = 47/73 (64.38%), Postives = 57/73 (78.08%), Query Frame = 2 Query: 584 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDINGRLL 802 D KLFVGNLP+ VDS LA LFE+AG VEI EVIY++ + RSRGFGFVTMST EE E A + F+ Y+I+GR + Sbjct: 87 DLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAI 159
BLAST of CX671479 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 3.080e-18 Identity = 44/73 (60.27%), Postives = 56/73 (76.71%), Query Frame = 2 Query: 584 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDINGRLL 802 D K+FVGNLP+ DS LA LFE+AG VE+ EVIY++ T RSRGFGFVTMS+ EE E A + F+ Y+++GR L Sbjct: 86 DLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRAL 158 HSP 2 Score: 71.633 bits (174), Expect = 5.625e-12 Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 2 Query: 590 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDINGRLL 802 +++VGNL + VD + L LF + G V A+V+Y+R++ RSRGFGFVT S+ EE A+E D+NGR + Sbjct: 189 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAI 259
BLAST of CX671479 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2) HSP 1 Score: 91.6633 bits (226), Expect = 5.253e-18 Identity = 45/73 (61.64%), Postives = 54/73 (73.97%), Query Frame = 2 Query: 584 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDINGRLL 802 D KLFVGNL ++VDS +LA LFE AG VE+ EVIY++ T RSRGFGFVTMST E E A + F+ Y+ GR L Sbjct: 98 DLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPL 170 HSP 2 Score: 67.781 bits (164), Expect = 8.123e-11 Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = 2 Query: 590 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDINGR 796 +L+VGNL + VD L LF + G V A VIY+R++ RS+GFGFVT+S+ +E +KA+ + D++GR Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGR 326
BLAST of CX671479 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 4.447e-17 Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 2 Query: 584 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDINGRLL 802 D K+FVGNL + DS LA LFE+AG VE+ EVIY++ T RSRGFGFVTMS+ EE E A + F+ Y+++GR L Sbjct: 86 DLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRAL 158 HSP 2 Score: 71.633 bits (174), Expect = 5.625e-12 Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 2 Query: 590 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDINGRLL 802 +++VGNL + VD + L LF + G V A+V+Y+R++ RSRGFGFVT S+ EE A+E D+NGR + Sbjct: 195 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAI 265 The following BLAST results are available for this feature:
BLAST of CX671479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671479 ID=CX671479; Name=CX671479; organism=Citrus sinensis; type=EST; length=802bpback to top |