CX671479

Overview
NameCX671479
Unique NameCX671479
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671479_ssr1 microsatellite CX671479_ssr1:1..14. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12720 contig Csv1_Contig12720:18..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671479 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.595e-33
Identity = 100/234 (42.74%), Postives = 123/234 (52.56%), Query Frame = 2
Query:  113 SSSTASVLKPLSSMADSTS--LLSPPSIFARNPYFSIHPRPRPIXXXXXXXXXXXXXXXXXXXXTIHF--SSFTTFVAQTSDWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGEDTVVEAGERQXXXXXXXXXXXXXXXXXXXDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDINGRLL 802
            SS   S LKPL+ MADS+S  + S PSI +      I      +                      H   S F +FVAQTSDWA  EE  + +                       D +EG++S+  E EG+ +     ER                    +AKLFVGNL YDV+S+ LAMLFE+AGTVEIAEVIYNRETD+SRGFGFVTMS+V+EAE AVE F+RYD+NGRLL
Sbjct:    3 SSIVTSSLKPLA-MADSSSSTIFSHPSISSTISSSRIRSSSVSLLTGRINLPLSFSRVSLSLKTKTHLKKSPFVSFVAQTSDWA--EEGGEGSVAVEETENSLESQDVSEGDESEGDASEGDVSEGDESEGDVSEGAVSERAEFPEPSE------------EAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLL 221          

HSP 2 Score: 75.485 bits (184), Expect = 3.896e-13
Identity = 35/71 (49.30%), Postives = 50/71 (70.42%), Query Frame = 2
Query:  590 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDINGRLL 802
            +++VGNLP+DVD+ +L  LF + G V  A V+Y+RET RSRGFGFVTMS V+E  +A+      ++ GR +
Sbjct:  245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAI 315          
BLAST of CX671479 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.429e-31
Identity = 103/249 (41.37%), Postives = 131/249 (52.61%), Query Frame = 2
Query:  110 MSSSTASVLKPLSSMADSTSLLSPPSIFARN--------PYFSIHPRPRPIXXXXXXXXXXXXXXXXXXXXTIHFS-SFTTFVA----QTSDWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGEDTVVEA-----GERQXXXXXXXXXXXXXXXXXXXDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDINGRLL 802
            MS +T  ++KP SSMA ++ L+S P +FA          PY S   +P  +                     +H S +++  +     +TS  A QEE+  NT I                   G  +  G+L ++ EP GE+T  E      G+                     DAKLFVGNLPYDVDSE LA LFE+AG VEIAEVIYNR+TD+SRGFGFVTMSTVEEAEKAVEM++RYD+NGRLL
Sbjct:    1 MSCATKPIIKP-SSMATNSCLISLPPLFATTTKSKSFAYPYLSNTLKPIKL---------------------LHLSCTYSPCILSPKKKTSVSALQEEE--NTLIL-----------------DGQGQESGDLFNF-EPSGEETEEEGFVEAVGDAGESDEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLL 207          
BLAST of CX671479 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.614e-29
Identity = 61/73 (83.56%), Postives = 69/73 (94.52%), Query Frame = 2
Query:  584 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDINGRLL 802
            DAKLFVGNLPYD+DSE LA LF++AG VEIAEVIYNRETDRSRGFGFVTMSTVEEA+KAVE++ +YD+NGRLL
Sbjct:   96 DAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLL 168          
BLAST of CX671479 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.629e-27
Identity = 77/160 (48.12%), Postives = 93/160 (58.13%), Query Frame = 2
Query:  329 VAQTSDWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPE--GEDTVVEAGERQXXXXXXXXXXXXXXXXXXXDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDINGRLL 802
            VAQTS+W  ++E   N  +                   G  + EG +S WG      ++  VE G+                     +AKLFVGNLPYDVDSEKLA +F+ AG VEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE+ + YD++GR L
Sbjct:    2 VAQTSEW--EQEGSTNAVLE------------------GESDPEGAVS-WGSETQVSDEGGVEGGQ--------------GFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQL 126          

HSP 2 Score: 69.3218 bits (168), Expect = 2.792e-11
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 2
Query:  590 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDINGR 796
            +++VGNLP+DVD+ +L  LF + G V  A V+ +RET RSRGFGFVTMS+  E   A+       ++GR
Sbjct:  150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGR 218          
BLAST of CX671479 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.785e-19
Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = 2
Query:  584 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDINGRLL 802
            D KLFVGNLP++VDS +LA LFE AG VE+ EVIY++ T RSRGFGFVTMS+V E E A + F+ Y+++GR L
Sbjct:   90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPL 162          
BLAST of CX671479 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.638e-19
Identity = 47/73 (64.38%), Postives = 57/73 (78.08%), Query Frame = 2
Query:  584 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDINGRLL 802
            D KLFVGNLP+ VDS  LA LFE+AG VE+ EVIY++ T RSRGFGFVTMST EE E A + F+ Y+I+GR +
Sbjct:   86 DLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAI 158          
BLAST of CX671479 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.751e-19
Identity = 47/73 (64.38%), Postives = 57/73 (78.08%), Query Frame = 2
Query:  584 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDINGRLL 802
            D KLFVGNLP+ VDS  LA LFE+AG VEI EVIY++ + RSRGFGFVTMST EE E A + F+ Y+I+GR +
Sbjct:   87 DLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAI 159          
BLAST of CX671479 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.080e-18
Identity = 44/73 (60.27%), Postives = 56/73 (76.71%), Query Frame = 2
Query:  584 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDINGRLL 802
            D K+FVGNLP+  DS  LA LFE+AG VE+ EVIY++ T RSRGFGFVTMS+ EE E A + F+ Y+++GR L
Sbjct:   86 DLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRAL 158          

HSP 2 Score: 71.633 bits (174), Expect = 5.625e-12
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 2
Query:  590 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDINGRLL 802
            +++VGNL + VD + L  LF + G V  A+V+Y+R++ RSRGFGFVT S+ EE   A+E     D+NGR +
Sbjct:  189 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAI 259          
BLAST of CX671479 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.253e-18
Identity = 45/73 (61.64%), Postives = 54/73 (73.97%), Query Frame = 2
Query:  584 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDINGRLL 802
            D KLFVGNL ++VDS +LA LFE AG VE+ EVIY++ T RSRGFGFVTMST  E E A + F+ Y+  GR L
Sbjct:   98 DLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPL 170          

HSP 2 Score: 67.781 bits (164), Expect = 8.123e-11
Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = 2
Query:  590 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDINGR 796
            +L+VGNL + VD   L  LF + G V  A VIY+R++ RS+GFGFVT+S+ +E +KA+   +  D++GR
Sbjct:  258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGR 326          
BLAST of CX671479 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.447e-17
Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 2
Query:  584 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDINGRLL 802
            D K+FVGNL +  DS  LA LFE+AG VE+ EVIY++ T RSRGFGFVTMS+ EE E A + F+ Y+++GR L
Sbjct:   86 DLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRAL 158          

HSP 2 Score: 71.633 bits (174), Expect = 5.625e-12
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 2
Query:  590 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDINGRLL 802
            +++VGNL + VD + L  LF + G V  A+V+Y+R++ RSRGFGFVT S+ EE   A+E     D+NGR +
Sbjct:  195 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAI 265          
The following BLAST results are available for this feature:
BLAST of CX671479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ROC3_ARATH2.595e-3342.7431 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC4_NICSY2.429e-3141.3731 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC3_NICSY6.614e-2983.5628 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_SPIOL3.629e-2748.1328 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
ROC1_ARATH2.785e-1963.01Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
ROC2_NICSY3.638e-1964.3829 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC2_NICPL4.751e-1964.3831 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_NICSY3.080e-1860.2729 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC2_ARATH5.253e-1861.6429 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC1_NICPL4.447e-1758.9030 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11C11_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11C11-F21-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671479 ID=CX671479; Name=CX671479; organism=Citrus sinensis; type=EST; length=802bp
TCTCTCTCTCTCTCGCTAAACCTCTCCTCTCCCAGTCCCTCTCTCACCAT
TCTACCCCTTATCCTTAGAGCTCTCCTCTGAAGTCTAAACCCTTGTCCTC
TCTGTGAAAATGTCTTCTTCAACAGCATCTGTATTGAAACCCTTATCATC
GATGGCGGACTCTACTTCTCTACTTTCGCCGCCCTCTATCTTCGCCCGAA
ACCCATATTTCTCTATCCACCCCAGACCCAGACCTATCAAGCTTCACCTT
TCCGACTCCTCCTTATCTTCGAAAGGTTTCTCCTTTAAGCTCAAAAAAAC
TATCCATTTCTCTTCATTCACGACTTTCGTTGCCCAAACGTCGGACTGGG
CCGACCAAGAAGAAGACAAAGACAACACCACCATCACTCTTGAACAAGAA
CAAGAAGAGAATGGGGAAGAAGAACCGAATTGGGAAAATCAAGGAGCCGA
TGAAACTGAAGGGAATTTATCTGATTGGGGGGAACCCGAAGGCGAAGACA
CAGTTGTTGAGGCTGGTGAAAGGCAGGAGGAGAGTGGTGAAGAGGGCGTT
TTTGAGGAAGAGGAATTTGTGGAACCACCTGAGGATGCTAAGTTGTTTGT
TGGGAACTTGCCCTATGATGTTGATAGTGAAAAGCTTGCTATGCTTTTTG
AGAAGGCTGGAACTGTCGAGATTGCCGAGGTTATTTACAACAGGGAGACT
GACCGGAGTCGTGGCTTTGGGTTCGTGACAATGAGTACTGTTGAGGAAGC
TGAAAAGGCTGTGGAAATGTTTCACAGATATGACATAAATGGAAGGCTTT
TG
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