CX671478
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 306.605 bits (784), Expect = 1.295e-82 Identity = 156/226 (69.03%), Postives = 183/226 (80.97%), Query Frame = -2 Query: 202 DETEGNLSDGGEPEGEDTVVEAGERQXXXXXXXXXXXXXXXXXXEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF 879 D +EG++S+G E EG+ + ER +AKLFVGNL YDV+S+ LAMLFE+AGTVEIAEVIYNRETD+SRGFGFVTMS+V+EAE AVE F+RYD++GRLLTVNKAAPRG++PERAPRV+EP FR+YVGNLPW+VDN RLEQ+FSEHGKVV ARVVYDRETGRSRGFGFVTMS ELN+AI+ALDGQNL+GRAIRVNVAE+R R + Sbjct: 116 DASEGDVSEGDESEGDVSEGAVSERAEFPEPSE------------EAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRRGY 329 HSP 2 Score: 72.7886 bits (177), Expect = 3.146e-12 Identity = 39/96 (40.62%), Postives = 58/96 (60.42%), Query Frame = -2 Query: 169 RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF*PNMTCHRFKV 456 +++VGNL ++V++ L +F + G V A V+Y+RET +SRGFGFVTMSS E A+ + +L+GR + VN A R R P + F+V Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRV 246
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 302.368 bits (773), Expect = 2.441e-81 Identity = 156/222 (70.27%), Postives = 178/222 (80.18%), Query Frame = -2 Query: 202 NLSDGGEPEGEDTVVEA-GERQXXXXXXXXXXXXXXXXXXEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF 864 N GE E+ VEA G+ EDAKLFVGNLPYDVDSE LA LFE+AG VEIAEVIYNR+TD+SRGFGFVTMSTVEEAEKAVEM++RYD++GRLLTVNKAA RG +PER PR FE +RIYVGN+PW +D+ARLEQ+FSEHGKVV+ARVVYDRETGRSRGFGFVTM+SE E++DAIA LDGQ+LDGR IRVNVAEDR RR++F Sbjct: 94 NFEPSGEETEEEGFVEAVGDAGESDEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSRRNTF 315
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 299.286 bits (765), Expect = 2.067e-80 Identity = 142/181 (78.45%), Postives = 169/181 (93.37%), Query Frame = -2 Query: 202 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF 744 DAKLFVGNLPYD+DSE LA LF++AG VEIAEVIYNRETDRSRGFGFVTMSTVEEA+KAVE++ +YD++GRLLTVNKAAPRG++PERAPR F+P +RIYVGN+PW++D+ARLEQVFSEHGKVV+ARVV+DRE+GRSRGFGFVTMSSE E+++AIA LDGQ LDGR IRVN AE+R RR+++ Sbjct: 96 DAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPRRNTY 276
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 291.582 bits (745), Expect = 4.310e-78 Identity = 159/229 (69.43%), Postives = 181/229 (79.04%), Query Frame = -2 Query: 208 QGADETEGNLSDGGEPEGEDTV-VEAGERQXXXXXXXXXXXXXXXXXXEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPR-VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRS 888 +G + EG +S G E + D VE G+ E+AKLFVGNLPYDVDSEKLA +F+ AG VEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE+ + YD+DGR LTVNKAAPRG+ PERAPR FEP R+YVGNLPW+VD +RLEQ+FSEHGKVV+ARVV DRETGRSRGFGFVTMSSE+E+NDAIAALDGQ LDGRA+RVNVAE+R RR+ Sbjct: 19 EGESDPEGAVSWGSETQVSDEGGVEGGQ--------------GFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGS-PERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERPRRA 232
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 197.978 bits (502), Expect = 6.485e-50 Identity = 105/188 (55.85%), Postives = 131/188 (69.68%), Query Frame = -2 Query: 202 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPR-------VFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF 744 D K+FVGNLP+ DS LA LFE+AG VE+ EVIY++ T RSRGFGFVTMS+ EE E A + F+ Y++DGR L VN P + + R F+ R+YVGNL W VD LE +FSE GKVV+A+VVYDR++GRSRGFGFVT SS E+N+AI +LDG +L+GRAIRV+ AE R R F Sbjct: 86 DLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 273 HSP 2 Score: 90.8929 bits (224), Expect = 1.116e-17 Identity = 44/91 (48.35%), Postives = 59/91 (64.84%), Query Frame = -2 Query: 205 RVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 477 R F P +I+VGNLP+ D+A L ++F G V V+YD+ TGRSRGFGFVTMSS+ E+ A +G LDGRA+RVN ++R + Sbjct: 81 RNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKREN 171
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 4.203e-49 Identity = 108/205 (52.68%), Postives = 135/205 (65.85%), Query Frame = -2 Query: 211 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPE---------------------------RAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 744 D KLFVGNLP+ VDS LA LFE+AG VE+ EVIY++ T RSRGFGFVTMST EE E A + F+ Y+IDGR + VN A P + E R R + R+YVGNL W VD+ L+++FSE G VV+A+VVYDR++GRSRGFGFVT SS E+NDAI +L+G +LDGR+IRV+ AE+R RR Sbjct: 86 DLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVN-AGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERPRR 289 HSP 2 Score: 84.7297 bits (208), Expect = 8.001e-16 Identity = 44/92 (47.83%), Postives = 59/92 (64.13%), Query Frame = -2 Query: 202 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV--AEDRQRRSSF 471 F +++VGNLP+ VD+A L +F G V V+YD+ TGRSRGFGFVTMS++ E+ A +G +DGRAIRVN A ++ SSF Sbjct: 83 FSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSF 174
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 9.364e-49 Identity = 108/205 (52.68%), Postives = 135/205 (65.85%), Query Frame = -2 Query: 211 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPE---------------------------RAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 744 D KLFVGNLP+ VDS LA LFE+AG VEI EVIY++ + RSRGFGFVTMST EE E A + F+ Y+IDGR + VN A P + E R R + R+YVGNL W VD+ L+++FSE G VV+A+VVYDR++GRSRGFGFVT SS E+NDAI +L+G +LDGR+IRV+ AE+R RR Sbjct: 87 DLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVN-AGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERPRR 290 HSP 2 Score: 82.8037 bits (203), Expect = 3.040e-15 Identity = 43/92 (46.74%), Postives = 59/92 (64.13%), Query Frame = -2 Query: 202 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNV--AEDRQRRSSF 471 F +++VGNLP+ VD+A L +F G V V+YD+ +GRSRGFGFVTMS++ E+ A +G +DGRAIRVN A ++ SSF Sbjct: 84 FSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSF 175
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 192.971 bits (489), Expect = 2.086e-48 Identity = 105/200 (52.50%), Postives = 131/200 (65.50%), Query Frame = -2 Query: 202 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPE---RAPRVF----------------EPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF 744 D KLFVGNLP++VDS +LA LFE AG VE+ EVIY++ T RSRGFGFVTMS+V E E A + F+ Y++DGR L VN P + + R PR G R+YVGNL W VD+ LE +FSE GKVV ARV+YDR++GRS+GFGFVT S E+ +AI +LDG +LDGR IRV+ AE R R + Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289 HSP 2 Score: 86.6557 bits (213), Expect = 2.106e-16 Identity = 42/87 (48.28%), Postives = 56/87 (64.37%), Query Frame = -2 Query: 211 FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR 471 F +++VGNLP+ VD+A+L Q+F G V V+YD+ TGRSRGFGFVTMSS +E+ A +G LDGR +RVN +R Sbjct: 87 FSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKR 173
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 191.815 bits (486), Expect = 4.647e-48 Identity = 104/194 (53.61%), Postives = 130/194 (67.01%), Query Frame = -2 Query: 202 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRV-------------FEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSSF 744 D K+FVGNL + DS LA LFE+AG VE+ EVIY++ T RSRGFGFVTMS+ EE E A + F+ Y++DGR L VN P + + R F+ R+YVGNL W VD LE +FSE GKVV+A+VVYDR++GRSRGFGFVT SS E+N+AI +LDG +L+GRAIRV+ AE R R F Sbjct: 86 DLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 279 HSP 2 Score: 87.8113 bits (216), Expect = 9.451e-17 Identity = 48/105 (45.71%), Postives = 63/105 (60.00%), Query Frame = -2 Query: 193 GTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRR--SSF*PN 501 G + R F P +I+VGNL + D+A L ++F G V V+YD+ TGRSRGFGFVTMSS+ E+ A +G LDGRA+RVN ++R SSF N Sbjct: 73 GDEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFREN 177
BLAST of CX671478 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 2.924e-34 Identity = 87/232 (37.50%), Postives = 128/232 (55.17%), Query Frame = -2 Query: 205 TEGNLSDGGEPEGEDTVVEAGERQXXXXXXXXXXXXXXXXXXEDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN-KAAPRGTQPE---RAPRVFEPGF-----RIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAEDRQRRSS 873 T ++SDG E ED E E +L+VGNLP+ + S +L+ +F +AGTV E++Y+R TDRSRGF FVTM +VEEA++A+ +F + GR + VN PRG + E R GF ++YV NL W + + L F++ ++A+V+YDR +GRSRGFGF+T SS +N A+ ++ L+GR +R+NVA + SS Sbjct: 70 TCASVSDGVEVVQEDDEEEVALSAEEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQKAPVSS 301 HSP 2 Score: 89.7373 bits (221), Expect = 2.487e-17 Identity = 47/126 (37.30%), Postives = 68/126 (53.97%), Query Frame = -2 Query: 226 VTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVFEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVVYDRETGRSRGFGFVTMSSETELNDAIAALDGQNLDGRAIRVNVAE 603 + +ST VE+ D + L+ + + ER G R+YVGNLP+ + +++L ++F+E G V N +VYDR T RSRGF FVTM S E +AI DG + GR ++VN E Sbjct: 66 IFLSTCASVSDGVEVVQEDDEEEVALSAEEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPE 191 The following BLAST results are available for this feature:
BLAST of CX671478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 235
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671478 ID=CX671478; Name=CX671478; organism=Citrus sinensis; type=EST; length=925bpback to top |