CX671470

Overview
NameCX671470
Unique NameCX671470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1493 contig Csv1_Contig1493:17..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX671470 vs. ExPASy Swiss-Prot
Match: CI023_MOUSE (Alba-like protein C9orf23 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.639e-12
Identity = 42/136 (30.88%), Postives = 66/136 (48.53%), Query Frame = 2 
Query:   53 MDRYQRV-------EKPKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWXXXXXXXXXXXTT--RHVSMITITLSKKELNRSSVGYQPP 433
            M++Y+R          P  + P D  E+R+    ++R+ +  A+  L+   +  +VF   GRA  K V+  E++KRR+ GLHQ T +      D+W            T  RHV  + + LS+  L+ S  GYQPP
Sbjct:    1 MEQYRRAGSVELPASSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSTRHVVFSGSGRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVLLSRDPLDPSECGYQPP 136
[Close]
BLAST of CX671470 vs. ExPASy Swiss-Prot
Match: CI023_HUMAN (Alba-like protein C9orf23 OS=Homo sapiens GN=C9orf23 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.134e-12
Identity = 38/120 (31.67%), Postives = 60/120 (50.00%), Query Frame = 2 
Query:   80 PKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWXXXXXXXXXXXTT--RHVSMITITLSKKELNRSSVGYQPP 433
            P  + P D  E+R+    ++R+ +  A+  L+   +  +VF   GRA  K V+  E++KRR+ GLHQ T +      D+W            T  RHV  + + LS+  L+ +  GYQPP
Sbjct:   17 PMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGYQPP 136
The following BLAST results are available for this feature:
BLAST of CX671470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CI023_MOUSE1.639e-1230.88Alba-like protein C9orf23 homolog OS=Mus musculus ... [more]
CI023_HUMAN8.134e-1231.67Alba-like protein C9orf23 OS=Homo sapiens GN=C9orf... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_11C07_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11C07-F13-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671470 ID=CX671470; Name=CX671470; organism=Citrus sinensis; type=EST; length=857bp
GAAGAAACGTAGCCGTAGAAGAGGGCGCTTTATCTTCAAAGAGTGAAGAA
AGATGGATCGGTACCAAAGAGTGGAGAAGCCAAAAGCAGAGACACCGATT
GACGAGAATGAAATTCGGATTACGAGTCAAGGGAGGATGCGCAGCTACAT
CACTTATGCTATGACTCTGCTTCAGGAAAGAGGTTCCAATGAGATTGTAT
TCAAGGCAATGGGAAGGGCTATCAATAAGACTGTAACAATAGTGGAGCTA
ATAAAAAGAAGAATTGTTGGCCTTCATCAGAATACAGTTATTGGATCCAC
GGACATAACTGATACGTGGGAGCCTTTGGAGGAAGGGCTTCTTCCGTTGG
AAACCACAAGGCATGTGTCAATGATTACAATAACTCTTTCAAAGAAGGAA
CTGAATAGGTCTTCTGTTGGGTATCAGCCTCCACTGCCTGCTGAACAAGT
TAAGCCATTGATAGAATTTGATTATGATGGAGAGGGCTCACCTAATGGAC
CCCGTAGGGGTCGGAGTGGTAGAGGAAGGTCAAGAGGAAGAGGTAATGGT
TTTGTGTCTGCTGAATATGAGGATGGAGGTTGGGACCGCAATAATCGGGG
CTATTCTAGAGGTAGGGGTCGAGGGAGAGGACGTAGTTTCCGTGGCCGTG
GGAGAGGAGGATATAATGGACCTCATTTTGATGCAAGGCAAGATGGAGGC
TACAATTATGAAGCACCTCCTCAAGGCAGTGGTCGTGGCCGTGGAAGGGG
AAACCGTGGTAGGGGCCGTGGCAATAGAGCAAATGGGCCGATCCAGGCAG
CTGCATGAGACTGGGTGGATCTCCCTGGAATGTGATGCACAAATGAGAGT
GTTGCCT
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