CX671453

Overview
NameCX671453
Unique NameCX671453
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12464 contig Csv1_Contig12464:40..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671453 vs. ExPASy Swiss-Prot
Match: RK15_PEA (50S ribosomal protein L15, chloroplastic (Fragment) OS=Pisum sativum GN=RPL15 PE=1 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 2.987e-84
Identity = 170/246 (69.11%), Postives = 191/246 (77.64%), Query Frame = 1
Query:   25 ASLLSVTANSLSFPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQLTVLNQXXXXXXXXTVGSGPVTNVRFRLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPGRKKWVKPSVAKNLARA 762
            ASL+ V+  SL   ++PFKGNVKTL+ KP   LC  LK+Q+     +++V+N+        + G     NVRFRL+NLGPQPGS          IAAGQG SCGFGMRGQKSRSGPG+ +GFEGGQMPLYRR+PKLRGIAGGMHAGLPKYV VNL DIE AGF +G+EVSLETLK K +INPSGRERKLPLKIL DGELSKKL  KA AFSTSAKEKLE AGC+L VLPGRKKWVKPSVAKNLARA
Sbjct:    4 ASLIPVS--SLPSLASPFKGNVKTLVAKP--CLCPCLKIQRTKL--RVSVVNKAASAYNVKSSGE----NVRFRLDNLGPQPGSRKRPKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMRGFEGGQMPLYRRLPKLRGIAGGMHAGLPKYVNVNLTDIENAGFQDGEEVSLETLKAKRVINPSGRERKLPLKILADGELSKKLTIKAGAFSTSAKEKLEYAGCSLIVLPGRKKWVKPSVAKNLARA 239          
BLAST of CX671453 vs. ExPASy Swiss-Prot
Match: RK15_ARATH (50S ribosomal protein L15, chloroplastic OS=Arabidopsis thaliana GN=RPL15 PE=1 SV=2)

HSP 1 Score: 303.908 bits (777), Expect = 6.229e-82
Identity = 166/260 (63.85%), Postives = 186/260 (71.54%), Query Frame = 1
Query:   22 MASLLSVTANSLS--------FPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQ-----LTVLNQXXXXXXXXTVGSGPVTNVRFRLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPGRKKWVKPSVAKNLARA 762
            MA+ LS+++N L+          ST FKGNV  L   P   L + L    + +  Q     L V++Q           S  V   RFRL+NLGPQPGS          I+AGQG SCGFGMRGQKSRSGPG+ +GFEGGQ  LYRR+PKLRGIAGGM +GLPKY+PVN+KDIE AGF EGDEVSLETLK+KGLINPSGRERKLPLKILG GELS KL FKARAFST AKEKLEA+GCTLTVLPGRKKWVKPSVAKN ARA
Sbjct:    1 MATPLSISSNPLTSRHCYRLHLSSTSFKGNVSVLGANPSQILSLKLNQTLKTRNQQQFARPLVVVSQTA------ATSSAVVAPERFRLDNLGPQPGSRKKQKRKGRGISAGQGASCGFGMRGQKSRSGPGIMRGFEGGQTALYRRLPKLRGIAGGMRSGLPKYLPVNIKDIETAGFQEGDEVSLETLKQKGLINPSGRERKLPLKILGTGELSMKLTFKARAFSTQAKEKLEASGCTLTVLPGRKKWVKPSVAKNQARA 254          
BLAST of CX671453 vs. ExPASy Swiss-Prot
Match: RL15_SYNP6 (50S ribosomal protein L15 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplO PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.484e-30
Identity = 78/158 (49.37%), Postives = 100/158 (63.29%), Query Frame = 1
Query:  244 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPK---YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 708
            +L+NL PQPG+          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L     Y  VN+  +  AG   G EV+LE+L   G++     +   PLKILGDGELS  L+  A AF+ +A++K+EAAG ++ ++
Sbjct:    2 KLDNLAPQPGAKKRKRRVGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLINRKFYTVVNVGAL--AGLAAGTEVTLESLMAVGIVT----QNDGPLKILGDGELSVSLSVSAAAFTATAQQKIEAAGGSIALV 147          
BLAST of CX671453 vs. ExPASy Swiss-Prot
Match: RL15_SYNE7 (50S ribosomal protein L15 OS=Synechococcus elongatus (strain PCC 7942) GN=rplO PE=3 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.484e-30
Identity = 78/158 (49.37%), Postives = 100/158 (63.29%), Query Frame = 1
Query:  244 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPK---YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 708
            +L+NL PQPG+          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L     Y  VN+  +  AG   G EV+LE+L   G++     +   PLKILGDGELS  L+  A AF+ +A++K+EAAG ++ ++
Sbjct:    2 KLDNLAPQPGAKKRKRRVGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLINRKFYTVVNVGAL--AGLAAGTEVTLESLMAVGIVT----QNDGPLKILGDGELSVSLSVSAAAFTATAQQKIEAAGGSIALV 147          
BLAST of CX671453 vs. ExPASy Swiss-Prot
Match: RL15_MICAN (50S ribosomal protein L15 OS=Microcystis aeruginosa (strain NIES-843) GN=rplO PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.036e-28
Identity = 72/148 (48.65%), Postives = 91/148 (61.49%), Query Frame = 1
Query:  244 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAA 687
            +L+ + PQPGS          ++AGQG SCG GMRGQKSRSG G R GFEGGQMPLYRR+PKL+           +Y  VNL+ +  A      EV+LE+L K  ++  +      PLK+LGDGE++  L  KA AFS SAKEK+ AA
Sbjct:    2 KLHEIAPQPGSTKRRRRVGRGVSAGQGASCGLGMRGQKSRSGTGTRPGFEGGQMPLYRRVPKLKHFP---LVNPRQYTIVNLRKL--ASLPANTEVTLESLLKAKILTSNDG----PLKVLGDGEITVPLKVKAAAFSNSAKEKITAA 140          
BLAST of CX671453 vs. ExPASy Swiss-Prot
Match: RL15_SYNS3 (50S ribosomal protein L15 OS=Synechococcus sp. (strain CC9311) GN=rplO PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.966e-28
Identity = 75/156 (48.08%), Postives = 94/156 (60.26%), Query Frame = 1
Query:  244 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLE-GDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 708
            RL +L P  G+          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L       + ++ A   ++ G  V+L++L K G++       K PLKILG+GEL  KL  +A AF+ SA+ K+EAAG T  VL
Sbjct:    4 RLESLKPNKGARRRKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFTLVNPKSFTVLNVSALNEIKAGSTVNLDSLVKDGIVT----SPKSPLKILGNGELKAKLTVQAAAFTASARAKIEAAGGTCEVL 149          
BLAST of CX671453 vs. ExPASy Swiss-Prot
Match: RL15_CYAP8 (50S ribosomal protein L15 OS=Cyanothece sp. (strain PCC 8801) GN=rplO PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.966e-28
Identity = 77/158 (48.73%), Postives = 99/158 (62.66%), Query Frame = 1
Query:  244 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGL--PK-YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 708
            R++ + P+ GS          I+AGQG SCGFGMRGQKSRSG G + GFEGGQMPLYRRIPKL+      H  L  PK Y  +N+  +E+       EV+LE+L ++G+I  +      PLK+LGDG L+K L  KA AFS SA+EK+ A G +  VL
Sbjct:    2 RIHEVTPKEGSTKRRRRVGRGISAGQGASCGFGMRGQKSRSGTGTKAGFEGGQMPLYRRIPKLK------HFPLVNPKHYTIINVGKLES--LEPNTEVTLESLMEQGIITTNDG----PLKVLGDGTLTKALTVKAAAFSKSAQEKIAATGGSWEVL 147          
BLAST of CX671453 vs. ExPASy Swiss-Prot
Match: RL15_CYAP7 (50S ribosomal protein L15 OS=Cyanothece sp. (strain PCC 7424) GN=rplO PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.179e-28
Identity = 75/153 (49.02%), Postives = 92/153 (60.13%), Query Frame = 1
Query:  247 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTV 705
            L+ L PQ G+          I+AGQG SCGFGMRGQKSRSG G + GFEGGQMPLYRRIPKL+           +Y  +N+  +  A      EV+LETL   GLI  +      PLKILG+GEL+  L  KA AF+  A+EK+EAAG +  V
Sbjct:    3 LHELAPQKGATKRRRRVGRGISAGQGASCGFGMRGQKSRSGTGTKPGFEGGQMPLYRRIPKLKHFP---LVNRRQYTIINVGQL--ASLDPNSEVTLETLMDAGLITTNDG----PLKILGNGELTIPLTIKAAAFTKGAQEKIEAAGGSCVV 146          
BLAST of CX671453 vs. ExPASy Swiss-Prot
Match: RL15_ANASP (50S ribosomal protein L15 OS=Anabaena sp. (strain PCC 7120) GN=rplO PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.764e-28
Identity = 74/155 (47.74%), Postives = 94/155 (60.65%), Query Frame = 1
Query:  244 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 708
            RLN++ PQ GS          I+AGQG S G GMRGQKSRSG G R GFEGGQ PLYRRIPKL+G           Y  +N++ +  A      EV+LE+L+  G++  +    K PLKILG+G+L   LN KA AF+  A+ K+EAAG +  VL
Sbjct:    2 RLNDVKPQKGSKKRRRRVGRGISAGQGASAGLGMRGQKSRSGSGTRPGFEGGQQPLYRRIPKLKGFP---VVNRKIYTTINVEKL--ADLPANTEVTLESLRAAGILTAA----KGPLKILGNGDLGVALNVKAAAFTGQARSKIEAAGGSCEVL 147          
BLAST of CX671453 vs. ExPASy Swiss-Prot
Match: RL15_SYNJA (50S ribosomal protein L15 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplO PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.834e-28
Identity = 72/149 (48.32%), Postives = 91/149 (61.07%), Query Frame = 1
Query:  244 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 690
            RL ++ PQPGS          IAAGQG SCG GMRGQK+R G G R GFEGGQ PLYRR+PKL+      +   P+Y  +NL+ +  A    G EVSLE+L   G++  +      PLKILGDGE+   L  +A A + SA+ K+EAAG
Sbjct:    2 RLEDIRPQPGSTRRRRRLGRGIAAGQGASCGKGMRGQKARKGGGPRPGFEGGQTPLYRRLPKLKHFP--RYVRRPQYTLINLRAL--AKLPAGSEVSLESLMDLGIVTTNDG----PLKILGDGEVGVPLTIRAAAITPSARAKVEAAG 142          
The following BLAST results are available for this feature:
BLAST of CX671453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK15_PEA2.987e-8469.1150S ribosomal protein L15, chloroplastic (Fragment... [more]
RK15_ARATH6.229e-8263.8550S ribosomal protein L15, chloroplastic OS=Arabid... [more]
RL15_SYNP62.484e-3049.3750S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_SYNE72.484e-3049.3750S ribosomal protein L15 OS=Synechococcus elongat... [more]
RL15_MICAN3.036e-2848.6550S ribosomal protein L15 OS=Microcystis aeruginos... [more]
RL15_SYNS33.966e-2848.0850S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_CYAP83.966e-2848.7350S ribosomal protein L15 OS=Cyanothece sp. (strai... [more]
RL15_CYAP75.179e-2849.0250S ribosomal protein L15 OS=Cyanothece sp. (strai... [more]
RL15_ANASP6.764e-2847.7450S ribosomal protein L15 OS=Anabaena sp. (strain ... [more]
RL15_SYNJA8.834e-2848.3250S ribosomal protein L15 OS=Synechococcus sp. (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_11B06_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11B06-D11-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671453 ID=CX671453; Name=CX671453; organism=Citrus sinensis; type=EST; length=763bp
ATCATCGTAATCATCTCCATCATGGCATCTCTTCTCTCAGTCACTGCAAA
TTCACTAAGCTTTCCATCAACTCCATTCAAGGGCAATGTCAAAACCCTAA
TGCCAAAACCCCCATCAAGCCTTTGCGTCCCTCTCAAAGTCCAACAAAGA
AATAAACCACCCCAGCTCACTGTCTTAAACCAAGCTGCTTCGGCTTCTGC
TTCAGCAACTGTTGGTTCGGGTCCCGTTACGAATGTACGGTTCCGGTTAA
ATAACCTGGGCCCACAACCGGGTTCGAGAAAGAGAGGGAAGAGAAAGGGG
AGAGGAATAGCAGCTGGGCAAGGTAACAGCTGTGGGTTTGGAATGAGAGG
TCAGAAATCGAGGTCTGGTCCTGGCGTTAGAAAGGGTTTTGAAGGTGGTC
AAATGCCTCTTTATCGTCGAATTCCTAAGCTCCGTGGGATTGCCGGAGGT
ATGCATGCTGGGTTACCTAAGTATGTCCCTGTTAACTTGAAAGACATAGA
AGCAGCTGGTTTTCTAGAGGGGGATGAAGTCTCACTAGAGACTTTGAAGA
AGAAGGGCTTGATCAATCCCTCAGGAAGAGAAAGGAAACTGCCTTTAAAG
ATTCTTGGTGATGGAGAATTAAGCAAGAAGCTGAACTTCAAGGCTCGTGC
CTTCTCTACATCAGCAAAGGAGAAGCTTGAAGCTGCAGGCTGTACCCTCA
CTGTCTTACCTGGCCGAAAGAAGTGGGTGAAACCATCAGTAGCTAAGAAC
CTTGCACGAGCTG
back to top