CX671452

Overview
NameCX671452
Unique NameCX671452
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671452 vs. ExPASy Swiss-Prot
Match: RK15_ARATH (50S ribosomal protein L15, chloroplastic OS=Arabidopsis thaliana GN=RPL15 PE=1 SV=2)

HSP 1 Score: 306.605 bits (784), Expect = 1.212e-82
Identity = 154/195 (78.97%), Postives = 166/195 (85.13%), Query Frame = -1
Query:  299 SATVGSGPVTNVRFRLNNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPGRKKWVKPSVAKNLARAEEYFAKKR 883
            +A   S  V   RFRL+NLGPQPGS         GI+AGQG SCGFGMRGQKSRSGPG+ +GFEGGQ  LYRR+PKLRGIAGGM +GLPKY+PVN+KDIE AGF EGDEVSLETLK+KGLINPSGRERKLPLKILG GELS KL FKARAFST AKEKLEA+GCTLTVLPGRKKWVKPSVAKN ARA+EYFAKKR
Sbjct:   68 TAATSSAVVAPERFRLDNLGPQPGSRKKQKRKGRGISAGQGASCGFGMRGQKSRSGPGIMRGFEGGQTALYRRLPKLRGIAGGMRSGLPKYLPVNIKDIETAGFQEGDEVSLETLKQKGLINPSGRERKLPLKILGTGELSMKLTFKARAFSTQAKEKLEASGCTLTVLPGRKKWVKPSVAKNQARADEYFAKKR 262          
BLAST of CX671452 vs. ExPASy Swiss-Prot
Match: RK15_PEA (50S ribosomal protein L15, chloroplastic (Fragment) OS=Pisum sativum GN=RPL15 PE=1 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 7.853e-82
Identity = 154/185 (83.24%), Postives = 162/185 (87.57%), Query Frame = -1
Query:  299 NVRFRLNNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPGRKKWVKPSVAKNLARAEEYFAKKR 853
            NVRFRL+NLGPQPGS         GIAAGQG SCGFGMRGQKSRSGPG+ +GFEGGQMPLYRR+PKLRGIAGGMHAGLPKYV VNL DIE AGF +G+EVSLETLK K +INPSGRERKLPLKIL DGELSKKL  KA AFSTSAKEKLE AGC+L VLPGRKKWVKPSVAKNLARAEEYFAKKR
Sbjct:   63 NVRFRLDNLGPQPGSRKRPKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMRGFEGGQMPLYRRLPKLRGIAGGMHAGLPKYVNVNLTDIENAGFQDGEEVSLETLKAKRVINPSGRERKLPLKILADGELSKKLTIKAGAFSTSAKEKLEYAGCSLIVLPGRKKWVKPSVAKNLARAEEYFAKKR 247          
BLAST of CX671452 vs. ExPASy Swiss-Prot
Match: RL15_SYNP6 (50S ribosomal protein L15 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplO PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.132e-30
Identity = 79/158 (50.00%), Postives = 101/158 (63.92%), Query Frame = -1
Query:  377 RLNNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPK---YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 841
            +L+NL PQPG+         GIAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L     Y  VN+  +  AG   G EV+LE+L   G++     +   PLKILGDGELS  L+  A AF+ +A++K+EAAG ++ ++
Sbjct:    2 KLDNLAPQPGAKKRKRRVGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLINRKFYTVVNVGAL--AGLAAGTEVTLESLMAVGIVT----QNDGPLKILGDGELSVSLSVSAAAFTATAQQKIEAAGGSIALV 147          
BLAST of CX671452 vs. ExPASy Swiss-Prot
Match: RL15_SYNE7 (50S ribosomal protein L15 OS=Synechococcus elongatus (strain PCC 7942) GN=rplO PE=3 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 3.132e-30
Identity = 79/158 (50.00%), Postives = 101/158 (63.92%), Query Frame = -1
Query:  377 RLNNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPK---YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 841
            +L+NL PQPG+         GIAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L     Y  VN+  +  AG   G EV+LE+L   G++     +   PLKILGDGELS  L+  A AF+ +A++K+EAAG ++ ++
Sbjct:    2 KLDNLAPQPGAKKRKRRVGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLINRKFYTVVNVGAL--AGLAAGTEVTLESLMAVGIVT----QNDGPLKILGDGELSVSLSVSAAAFTATAQQKIEAAGGSIALV 147          
BLAST of CX671452 vs. ExPASy Swiss-Prot
Match: RL15_MICAN (50S ribosomal protein L15 OS=Microcystis aeruginosa (strain NIES-843) GN=rplO PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.828e-28
Identity = 73/148 (49.32%), Postives = 92/148 (62.16%), Query Frame = -1
Query:  398 RLNNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAA 841
            +L+ + PQPGS         G++AGQG SCG GMRGQKSRSG G R GFEGGQMPLYRR+PKL+           +Y  VNL+ +  A      EV+LE+L K  ++  +      PLK+LGDGE++  L  KA AFS SAKEK+ AA
Sbjct:    2 KLHEIAPQPGSTKRRRRVGRGVSAGQGASCGLGMRGQKSRSGTGTRPGFEGGQMPLYRRVPKLKHFP---LVNPRQYTIVNLRKL--ASLPANTEVTLESLLKAKILTSNDG----PLKVLGDGEITVPLKVKAAAFSNSAKEKITAA 140          
BLAST of CX671452 vs. ExPASy Swiss-Prot
Match: RL15_SYNS3 (50S ribosomal protein L15 OS=Synechococcus sp. (strain CC9311) GN=rplO PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.000e-28
Identity = 76/156 (48.72%), Postives = 95/156 (60.90%), Query Frame = -1
Query:  377 RLNNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLE-GDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 841
            RL +L P  G+         GIAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L       + ++ A   ++ G  V+L++L K G++       K PLKILG+GEL  KL  +A AF+ SA+ K+EAAG T  VL
Sbjct:    4 RLESLKPNKGARRRKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFTLVNPKSFTVLNVSALNEIKAGSTVNLDSLVKDGIVT----SPKSPLKILGNGELKAKLTVQAAAFTASARAKIEAAGGTCEVL 149          
BLAST of CX671452 vs. ExPASy Swiss-Prot
Match: RL15_CYAP8 (50S ribosomal protein L15 OS=Cyanothece sp. (strain PCC 8801) GN=rplO PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.000e-28
Identity = 78/158 (49.37%), Postives = 100/158 (63.29%), Query Frame = -1
Query:  377 RLNNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGL--PK-YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 841
            R++ + P+ GS         GI+AGQG SCGFGMRGQKSRSG G + GFEGGQMPLYRRIPKL+      H  L  PK Y  +N+  +E+       EV+LE+L ++G+I  +      PLK+LGDG L+K L  KA AFS SA+EK+ A G +  VL
Sbjct:    2 RIHEVTPKEGSTKRRRRVGRGISAGQGASCGFGMRGQKSRSGTGTKAGFEGGQMPLYRRIPKLK------HFPLVNPKHYTIINVGKLES--LEPNTEVTLESLMEQGIITTNDG----PLKVLGDGTLTKALTVKAAAFSKSAQEKIAATGGSWEVL 147          
BLAST of CX671452 vs. ExPASy Swiss-Prot
Match: RL15_CYAP7 (50S ribosomal protein L15 OS=Cyanothece sp. (strain PCC 7424) GN=rplO PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.530e-28
Identity = 76/153 (49.67%), Postives = 93/153 (60.78%), Query Frame = -1
Query:  380 LNNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTV 838
            L+ L PQ G+         GI+AGQG SCGFGMRGQKSRSG G + GFEGGQMPLYRRIPKL+           +Y  +N+  +  A      EV+LETL   GLI  +      PLKILG+GEL+  L  KA AF+  A+EK+EAAG +  V
Sbjct:    3 LHELAPQKGATKRRRRVGRGISAGQGASCGFGMRGQKSRSGTGTKPGFEGGQMPLYRRIPKLKHFP---LVNRRQYTIINVGQL--ASLDPNSEVTLETLMDAGLITTNDG----PLKILGNGELTIPLTIKAAAFTKGAQEKIEAAGGSCVV 146          
BLAST of CX671452 vs. ExPASy Swiss-Prot
Match: RL15_ANASP (50S ribosomal protein L15 OS=Anabaena sp. (strain PCC 7120) GN=rplO PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.528e-28
Identity = 75/155 (48.39%), Postives = 95/155 (61.29%), Query Frame = -1
Query:  377 RLNNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 841
            RLN++ PQ GS         GI+AGQG S G GMRGQKSRSG G R GFEGGQ PLYRRIPKL+G           Y  +N++ +  A      EV+LE+L+  G++  +    K PLKILG+G+L   LN KA AF+  A+ K+EAAG +  VL
Sbjct:    2 RLNDVKPQKGSKKRRRRVGRGISAGQGASAGLGMRGQKSRSGSGTRPGFEGGQQPLYRRIPKLKGFP---VVNRKIYTTINVEKL--ADLPANTEVTLESLRAAGILTAA----KGPLKILGNGDLGVALNVKAAAFTGQARSKIEAAGGSCEVL 147          
BLAST of CX671452 vs. ExPASy Swiss-Prot
Match: RL15_SYNJA (50S ribosomal protein L15 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplO PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.114e-27
Identity = 73/149 (48.99%), Postives = 92/149 (61.74%), Query Frame = -1
Query:  395 RLNNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 841
            RL ++ PQPGS         GIAAGQG SCG GMRGQK+R G G R GFEGGQ PLYRR+PKL+      +   P+Y  +NL+ +  A    G EVSLE+L   G++  +      PLKILGDGE+   L  +A A + SA+ K+EAAG
Sbjct:    2 RLEDIRPQPGSTRRRRRLGRGIAAGQGASCGKGMRGQKARKGGGPRPGFEGGQTPLYRRLPKLKHFP--RYVRRPQYTLINLRAL--AKLPAGSEVSLESLMDLGIVTTNDG----PLKILGDGEVGVPLTIRAAAITPSARAKVEAAG 142          
The following BLAST results are available for this feature:
BLAST of CX671452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK15_ARATH1.212e-8278.9750S ribosomal protein L15, chloroplastic OS=Arabid... [more]
RK15_PEA7.853e-8283.2450S ribosomal protein L15, chloroplastic (Fragment... [more]
RL15_SYNP63.132e-3050.0050S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_SYNE73.132e-3050.0050S ribosomal protein L15 OS=Synechococcus elongat... [more]
RL15_MICAN3.828e-2849.3250S ribosomal protein L15 OS=Microcystis aeruginos... [more]
RL15_SYNS35.000e-2848.7250S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_CYAP85.000e-2849.3750S ribosomal protein L15 OS=Cyanothece sp. (strai... [more]
RL15_CYAP76.530e-2849.6750S ribosomal protein L15 OS=Cyanothece sp. (strai... [more]
RL15_ANASP8.528e-2848.3950S ribosomal protein L15 OS=Anabaena sp. (strain ... [more]
RL15_SYNJA1.114e-2748.9950S ribosomal protein L15 OS=Synechococcus sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11B06_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11B06-D11-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671452 ID=CX671452; Name=CX671452; organism=Citrus sinensis; type=EST; length=883bp
TTTTTTTTCATCAAATGGTGATCTAATCAACATAATAACTGAGATTTGGC
TTTCCAGCTAAGTAACATGAGAATCAGAACATTGAGAGTTTAGCTGAATT
TTTAAAAGGGAGGGGATACAAAGAAGAGACAAATTCCAGAAATTACAGCT
ATAGACATCCTCCTCTCATTTCGCTACCCCGAAAACCTAAAACCAGAGAA
AAAGAATCGAAGACAATTCAATGGCTCTACTTAGTTACAGTGAGTGAAAA
AAACCAAGTGGTTCAAGCTGAAGTTGAATCGGATGCAGCTGCAGCAGCTC
TCTTCTTGGCGAAGTATTCTTCAGCTCGTGCAAGGTTCTTAGCTACTGAT
GGTTTCACCCACTTCTTTCGGCCAGGTAAGACAGTGAGGGTACAGCCTGC
AGCTTCAAGCTTCTCCTTTGCTGATGTAGAGAAGGCACGAGCCTTGAAGT
TCAGCTTCTTGCTTAATTCTCCATCACCAAGAATCTTTAAAGGCAGTTTC
CTTTCTCTTCCTGAGGGATTGATCAAGCCCTTCTTCTTCAAAGTCTCTAG
TGAGACTTCATCCCCCTCTAGAAAACCAGCTGCTTCTATGTCTTTCAAGT
TAACAGGGACATACTTAGGTAACCCAGCATGCATACCTCCGGCAATCCCA
CGGAGCTTAGGAATTCGACGATAAAGAGGCATTTGACCACCTTCAAAACC
CTTTCTAACGCCAGGACCAGACCTCGATTTCTGACCTCTCATTCCAAACC
CACAGCTGTTACCTTGCCCAGCTGCTATTCCTCTCCCCTTTCTCTTCCCT
CTCTTTCTCGAACCCGGTTGTGGGCCCAGGTTATTTAACCGGAACCGTAC
ATTCGTAACGGGACCCGAACCAACAGTTGCTGA
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