CX043581

Overview
NameCX043581
Unique NameCX043581
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length524
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8317 contig Csv1_Contig8317:80..605. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX043581 vs. ExPASy Swiss-Prot
Match: PSBW_SPIOL (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.547e-17
Identity = 48/98 (48.98%), Postives = 56/98 (57.14%), Query Frame = -1 
Query:  174 ASPVCGLPAMATTRGRVRCSLDEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVDERMTTEGTGLPFGLSNNTLGWILFGVFGLIWALYFIY 467
            +SP+ GLP+M T R +V CS++ K                                   VDERM+TEGTGLPFGLSNN LGWILFGVFGLIWALYF+Y
Sbjct:   28 SSPILGLPSM-TKRSKVTCSIENKPSTTETTTTTNKSMGASLLAAAAAATISNPAMAL-VDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVY 123
[Close]
BLAST of CX043581 vs. ExPASy Swiss-Prot
Match: PSBW_ARATH (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 3.326e-17
Identity = 46/99 (46.46%), Postives = 54/99 (54.55%), Query Frame = -1 
Query:  171 ASPVCGLPAMATTRGRVRCSLDEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVDERMTTEGTGLPFGLSNNTLGWILFGVFGLIWALYFIYT 467
            ++PV GLP M   +G VRCS++ K                                   VDERM+TEGTGLPFGLSNN LGWILFGVFGLIW  +F+YT
Sbjct:   27 SAPVLGLPPMGKKKGGVRCSMETKQGNVSVMGAGVSAAATAALTAVMSNPAMAL-----VDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVYT 120
[Close]
BLAST of CX043581 vs. ExPASy Swiss-Prot
Match: PSBW_ORYSJ (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSBW PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.107e-12
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = -1 
Query:  171 VDERMTTEGTGLPFGLSNNTLGWILFGVFGLIWALYFIYT 290
            VDERM+TEGTGL  GLSNN LGWIL GVFGLIW+LY IYT
Sbjct:   71 VDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIYT 110
The following BLAST results are available for this feature:
BLAST of CX043581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PSBW_SPIOL2.547e-1748.98Photosystem II reaction center W protein, chloropl... [more]
PSBW_ARATH3.326e-1746.46Photosystem II reaction center W protein, chloropl... [more]
PSBW_ORYSJ1.107e-1282.50Photosystem II reaction center W protein, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_12B01_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12B01-C2-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043581 ID=CX043581; Name=CX043581; organism=Citrus sinensis; type=EST; length=524bp
TTGGGTACCGCGGCCCCCCCACAAAATTCAAGAGCCAAAAGCTTTTCTTT
GGTTGATTTAAAGGTTTCCAGTTCTTTACCAAGAGGGCATTAATTAATTC
AACAAGCTAAGTTTAAATAACCCTTAATTCAAAGGGACAAGCCAGACTCT
TCATCTTCTTCAAGATCGCCAGTGTAAATAAAATAGAGAGCCCAAATCAA
TCCAAACACACCAAAGAGAATCCACCCAAGAGTGTTGTTGCTTAGTCCAA
ATGGAAGCCCTGTTCCTTCTGTGGTCATTCTCTCATCCACCAACGCCATG
GCTGACCCTGCGGCCGTACTCAAGGCTGCGGCGGCTGCCATAAGTGATGC
AACCATGCTTGCTCTTGAGCTCTTGCTGCTGGCAGCAGCTGGTGCCTTTT
CATCTAAGCTGCATCTCACACGTCCCCTTGTTGTTGCCATTGCAGGCAGG
CCACAGACTGGTGATGCGTGAGTTAAGCCCTTGGGCACAAAACCTGATCT
TGGGAGCAATGCAGGAAAGTTCCT
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