CX043580

Overview
NameCX043580
Unique NameCX043580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length374
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2871 contig Csv1_Contig2871:863..1201. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043580 vs. ExPASy Swiss-Prot
Match: PALY_POPTR (Phenylalanine ammonia-lyase OS=Populus trichocarpa GN=PAL PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.654e-18
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = -2
Query:  227 FVREGLGSNFLTGEKVASPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 373
            FVRE LG+  LTGEKV SPGEEFDKVFTAMCQGKIIDPMLECL EWNG+
Sbjct:  662 FVREELGTVLLTGEKVQSPGEEFDKVFTAMCQGKIIDPMLECLGEWNGS 710          
BLAST of CX043580 vs. ExPASy Swiss-Prot
Match: PAL1_ARATH (Phenylalanine ammonia-lyase 1 OS=Arabidopsis thaliana GN=PAL1 PE=1 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 3.654e-18
Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = -2
Query:  227 FVREGLGSNFLTGEKVASPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 373
            FVRE LG+  LTGEKV SPGEEFDKVFTA+C+GKIIDPM+ECL EWNGA
Sbjct:  672 FVREELGTELLTGEKVTSPGEEFDKVFTAICEGKIIDPMMECLNEWNGA 720          
BLAST of CX043580 vs. ExPASy Swiss-Prot
Match: PALY_CITLI (Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL6 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.773e-18
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = -2
Query:  227 VREGLGSNFLTGEKVASPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 370
            VRE +G++ LTGEKV SPGEEFDKVFTAMC+GK+IDPMLECL+EWNGA
Sbjct:  668 VREDIGTSLLTGEKVRSPGEEFDKVFTAMCEGKLIDPMLECLKEWNGA 715          
BLAST of CX043580 vs. ExPASy Swiss-Prot
Match: PAL2_ARATH (Phenylalanine ammonia-lyase 2 OS=Arabidopsis thaliana GN=PAL2 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.233e-18
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = -2
Query:  227 FVREGLGSNFLTGEKVASPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 373
            FVRE LG+  LTGEKV SPGEEFDKVFTAMC+GK+IDP+++CL+EWNGA
Sbjct:  664 FVREELGTKLLTGEKVVSPGEEFDKVFTAMCEGKLIDPLMDCLKEWNGA 712          
BLAST of CX043580 vs. ExPASy Swiss-Prot
Match: PAL1_SOYBN (Phenylalanine ammonia-lyase 1 OS=Glycine max GN=PAL1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.233e-18
Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = -2
Query:  227 FVREGLGSNFLTGEKVASPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 373
            FVRE LG+  LTGEKV SPGEEFDK+FTAMCQGKIIDP++ECL EWNGA
Sbjct:  660 FVREELGTGLLTGEKVRSPGEEFDKLFTAMCQGKIIDPLMECLGEWNGA 708          
BLAST of CX043580 vs. ExPASy Swiss-Prot
Match: PAL1_PHAVU (Phenylalanine ammonia-lyase class 1 (Fragment) OS=Phaseolus vulgaris PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.063e-17
Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = -2
Query:  227 FVREGLGSNFLTGEKVASPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 373
            FVRE LG+  LTGEKV SPGEEFDK+FTA+CQGKIIDP+LECL EWNGA
Sbjct:  453 FVREELGTGLLTGEKVKSPGEEFDKLFTAICQGKIIDPLLECLGEWNGA 501          
BLAST of CX043580 vs. ExPASy Swiss-Prot
Match: PALY_PERAE (Phenylalanine ammonia-lyase OS=Persea americana GN=PAL PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.814e-17
Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = -2
Query:  227 FVREGLGSNFLTGEKVASPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 373
            FVRE L ++ LTGEKV SPGEEFDKVF+A+CQGK+IDP+LECLREWNGA
Sbjct:  567 FVREELKTSLLTGEKVRSPGEEFDKVFSAICQGKVIDPLLECLREWNGA 615          
BLAST of CX043580 vs. ExPASy Swiss-Prot
Match: PAL2_PHAVU (Phenylalanine ammonia-lyase class 2 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.094e-17
Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = -2
Query:  227 FVREGLGSNFLTGEKVASPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 373
            FVRE LG++ LTGEKV SPGEE DKVF+AMCQGKIIDP+LECL EWNGA
Sbjct:  659 FVREELGTSLLTGEKVISPGEECDKVFSAMCQGKIIDPLLECLGEWNGA 707          
BLAST of CX043580 vs. ExPASy Swiss-Prot
Match: PAL2_POPKI (Phenylalanine ammonia-lyase G2B OS=Populus kitakamiensis GN=PALG2B PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.040e-17
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = -2
Query:  227 FVREGLGSNFLTGEKVASPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 373
            FVRE LG++ LTGEKV SPGEEFDKVFTA+C GK+IDP+LECL+EW+GA
Sbjct:  657 FVREELGTSLLTGEKVKSPGEEFDKVFTAICAGKLIDPLLECLKEWDGA 705          
BLAST of CX043580 vs. ExPASy Swiss-Prot
Match: PALY_STYHU (Phenylalanine ammonia-lyase OS=Stylosanthes humilis GN=PAL17.1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.277e-17
Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = -2
Query:  227 FVREGLGSNFLTGEKVASPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 373
            FVRE LG+  LTGEKV SPGEE DK+FTAMCQGKIIDP+LEC+ EWNGA
Sbjct:  662 FVREELGTEMLTGEKVRSPGEECDKLFTAMCQGKIIDPLLECIGEWNGA 710          
The following BLAST results are available for this feature:
BLAST of CX043580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
PALY_POPTR3.654e-1885.71Phenylalanine ammonia-lyase OS=Populus trichocarpa... [more]
PAL1_ARATH3.654e-1881.63Phenylalanine ammonia-lyase 1 OS=Arabidopsis thali... [more]
PALY_CITLI4.773e-1881.25Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL... [more]
PAL2_ARATH6.233e-1877.55Phenylalanine ammonia-lyase 2 OS=Arabidopsis thali... [more]
PAL1_SOYBN6.233e-1881.63Phenylalanine ammonia-lyase 1 OS=Glycine max GN=PA... [more]
PAL1_PHAVU1.063e-1781.63Phenylalanine ammonia-lyase class 1 (Fragment) OS=... [more]
PALY_PERAE1.814e-1779.59Phenylalanine ammonia-lyase OS=Persea americana GN... [more]
PAL2_PHAVU3.094e-1781.63Phenylalanine ammonia-lyase class 2 OS=Phaseolus v... [more]
PAL2_POPKI4.040e-1777.55Phenylalanine ammonia-lyase G2B OS=Populus kitakam... [more]
PALY_STYHU5.277e-1779.59Phenylalanine ammonia-lyase OS=Stylosanthes humili... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12A12_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12A12-A24-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043580 ID=CX043580; Name=CX043580; organism=Citrus sinensis; type=EST; length=374bp
TTTTTTTTTTTTTTTTTAAGCCAAAAAATTTTAAAGTGAGAAAGAAGAAA
AATAAAGGACAATAAGTCTTATAACCTTAAATGAAAAAACCAATAGAAGT
GATTGAAATATTACAGATGGATTTGTACCACTGACTCGCATGGGCAAATT
CTATGAACACAAAAACACAAGGGATTGAAGACCATGTTATTAAACAAAAT
AAAAACAACTAACAAATTGGAAGAGGGGCGCCATTCCATTCCCTGAGACA
TTCCAGCATTGGATCAATGATCTTGCCCTGGCACATTGCTGTAAAAACTT
TGTCAAATTCCTCGCCGGGGGAAGCAACTTTTTCCCCTGTTAAAAAATTA
GACCCGAGCCCCTCCCTCACGAAC
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