CX671426

Overview
NameCX671426
Unique NameCX671426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671426_ssr335 microsatellite CX671426_ssr335:335..346. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13759 contig Csv1_Contig13759:454..1269. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: GBLP_MEDSA (Guanine nucleotide-binding protein subunit beta-like protein OS=Medicago sativa GN=GB1 PE=2 SV=1)

HSP 1 Score: 349.362 bits (895), Expect = 1.462e-95
Identity = 167/200 (83.50%), Postives = 176/200 (88.00%), Query Frame = -3
Query:  225 TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY 824
            TIKLWNTLGECKYTIQ+GDAH++WVSCVRFSP+T QPTIVSASWDRTVKVWNL+NCKLR TLAGH+GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG++IHALCFSPNRYWLCAATE SIKIWDLESKSIVEDLKVDL                    IYCTSLNWS DGSTLFSGYTDGV+RVWGIGRY
Sbjct:  128 TIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPSTPQPTIVSASWDRTVKVWNLTNCKLRNTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGSIIHALCFSPNRYWLCAATESSIKIWDLESKSIVEDLKVDLKTEADAAIGGDTTTKKKV--IYCTSLNWSADGSTLFSGYTDGVVRVWGIGRY 325          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: GBLP_SOYBN (Guanine nucleotide-binding protein subunit beta-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 347.821 bits (891), Expect = 4.254e-95
Identity = 167/200 (83.50%), Postives = 175/200 (87.50%), Query Frame = -3
Query:  225 TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY 824
            TIKLWNTLGECKYTIQ+GDAH++WVSCVRFSP+TLQPTIVSASWDRTVKVWNL+NCKLR TLAGH GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG++IHALCFSP+RYWLCAATEQSIKIWDLESKSIVEDLKVDL                    IYCTSLNWS DGSTLFSGYTDGV RVW IGRY
Sbjct:  128 TIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPSTLQPTIVSASWDRTVKVWNLTNCKLRNTLAGHNGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGSIIHALCFSPSRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEADATSGGGNANKKKV--IYCTSLNWSADGSTLFSGYTDGVARVWAIGRY 325          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: GBLP_ARATH (Guanine nucleotide-binding protein subunit beta-like protein OS=Arabidopsis thaliana GN=ARCA PE=1 SV=2)

HSP 1 Score: 339.347 bits (869), Expect = 1.513e-92
Identity = 164/201 (81.59%), Postives = 173/201 (86.07%), Query Frame = -3
Query:  225 TIKLWNTLGECKYTIQEG-DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY 824
            TIKLWNTLGECKYTI EG + H +WVSCVRFSPNTLQPTIVSASWD+TVKVWNLSNCKLR+TLAGHTGYV+TVAVSPDGSLCASGGKDGV+LLWDLAEGK+LYSL+A +VIHALCFSPNRYWLCAATE  IKIWDLESKSIVEDLKVDL                    IYCTSLNWS DGSTLFSGYTDGVIRVWGIGRY
Sbjct:  128 TIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKV-IYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 327          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: GBLP_TOBAC (Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana tabacum GN=ARCA PE=2 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 4.867e-91
Identity = 156/200 (78.00%), Postives = 173/200 (86.50%), Query Frame = -3
Query:  225 TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY 824
            +I+LWNTLGECKYTIQ+GD+H++WVSCVRFSPN LQPTIVS SWDRTVK+WNL+NCKLR TLAGHTGYVNT AVSPDGSLCASGGKDGVILLWDLAEGK+LYSL++G++IH+LCFSPNRYWLCAATE SIKIWDLESKSIV+DLKVDL                    IYCTSL+WS DGSTLFSGYTDG+IRVWGI RY
Sbjct:  129 SIRLWNTLGECKYTIQDGDSHSDWVSCVRFSPNNLQPTIVSGSWDRTVKIWNLTNCKLRLTLAGHTGYVNTPAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLESGSIIHSLCFSPNRYWLCAATESSIKIWDLESKSIVDDLKVDLKQESEMSSEGTASGKNKV--IYCTSLSWSADGSTLFSGYTDGLIRVWGIDRY 326          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: GBLP_NICPL (Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 4.867e-91
Identity = 155/200 (77.50%), Postives = 173/200 (86.50%), Query Frame = -3
Query:  225 TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY 824
            +I+LWNTLGECKY IQ+GD+H++WVSCVRFSPN LQPTIVS SWDRTVK+WNL+NCKLRATLAGHTGYVNT AVSPDGSLCASGGKDGVILLWDLAEGK+LYSL++G++IH+LCFSPNRYWLCAATE SIKIWDLESK+IV+DLKVDL                    IYCTSL WS DGSTLFSGYTDG+IRVWGIGR+
Sbjct:  129 SIRLWNTLGECKYIIQDGDSHSDWVSCVRFSPNNLQPTIVSGSWDRTVKIWNLTNCKLRATLAGHTGYVNTTAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLESGSIIHSLCFSPNRYWLCAATESSIKIWDLESKTIVDDLKVDLKQESEMSAEGTASGKNKV--IYCTSLGWSADGSTLFSGYTDGLIRVWGIGRF 326          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: GBLP_BRANA (Guanine nucleotide-binding protein subunit beta-like protein OS=Brassica napus GN=GB1 PE=2 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 8.302e-91
Identity = 161/201 (80.10%), Postives = 173/201 (86.07%), Query Frame = -3
Query:  225 TIKLWNTLGECKYTIQEG-DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY 824
            TIKLWNTLGECKYTI EG + H +WVSCVRFSPNTLQPTIVSAS D+TVKVWNLSNCKLR+TLAGHTGYV+TVAVSPDGSLCASGGKDGV+LLWDLAEGK+LYSL+A +VIHALCF+PNRYWLCAATEQ IKIWDLESK++VEDLKVDL                    IYCTSLNWS DGSTLFSGYTDGVIRVWGIGRY
Sbjct:  128 TIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASCDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFTPNRYWLCAATEQGIKIWDLESKTVVEDLKVDLKAEAEKSDGSGTAATKRKV-IYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 327          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: GBLP_ORYSJ (Guanine nucleotide-binding protein subunit beta-like protein OS=Oryza sativa subsp. japonica GN=Os01g0686800 PE=1 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 1.017e-80
Identity = 144/204 (70.59%), Postives = 159/204 (77.94%), Query Frame = -3
Query:  225 TIKLWNTLGECKYTIQE----GDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY 824
            TIKLWNTLGECKYTI      G+ H  WVSCVRFSPNT QPTIVS SWDRTVKVWNL+NCKLR  L GH GYVN VAVSPDGSLCASGGKDGV LLWDLAEGKRLYSLDAG++IH+LCFSPNRYWLCAAT+ SIKIWDLESK IV+DLK ++                    +YCTSLNWS DGSTL++GYTDG IR++ I  +
Sbjct:  140 TIKLWNTLGECKYTIGGDLGGGEGHNGWVSCVRFSPNTFQPTIVSGSWDRTVKVWNLTNCKLRCNLEGHGGYVNAVAVSPDGSLCASGGKDGVTLLWDLAEGKRLYSLDAGSIIHSLCFSPNRYWLCAATQDSIKIWDLESKHIVQDLKPEIPVSKNQM-------------LYCTSLNWSADGSTLYAGYTDGTIRIYKISGF 330          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: GBLP_CHLRE (Guanine nucleotide-binding protein subunit beta-like protein OS=Chlamydomonas reinhardtii GN=GBLP PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 5.582e-79
Identity = 139/198 (70.20%), Postives = 151/198 (76.26%), Query Frame = -3
Query:  231 TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 824
            TIKLWNTLGECKYTI E + HTEWVSCVRFSP T  P IVS  WD+ VKVWNL+NCKL+  L GH GYVNTV VSPDGSLCASGGKDG+ +LWDLAEGKRLYSLDAG VIH LCFSPNRYWLCAAT+ SIKIWDLESKSIV+DL+ +                      YC SL WS DGSTL+SGYTDG IRVW +G
Sbjct:  129 TIKLWNTLGECKYTIGEPEGHTEWVSCVRFSPMTTNPIIVSGGWDKMVKVWNLTNCKLKNNLVGHHGYVNTVTVSPDGSLCASGGKDGIAMLWDLAEGKRLYSLDAGDVIHCLCFSPNRYWLCAATQSSIKIWDLESKSIVDDLRPEFNITSKKAQVP-----------YCVSLAWSADGSTLYSGYTDGQIRVWAVG 315          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: GBLP_DANRE (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Danio rerio GN=gnb2l1 PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 4.284e-71
Identity = 128/197 (64.97%), Postives = 145/197 (73.60%), Query Frame = -3
Query:  234 TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 824
            TIKLWNTLG CKYTIQ+ D+HTEWVSCVRFSPN+  P IVS  WD+ VKVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY+LD G  I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++L+ D+                      CTSL WS DG TLF+GYTD +IRVW +
Sbjct:  128 TIKLWNTLGVCKYTIQD-DSHTEWVSCVRFSPNSSNPIIVSCGWDKMVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDTINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELRQDIITTNSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLIRVWQV 312          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: GBLP_ORENI (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Oreochromis niloticus GN=gnb2l1 PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.628e-70
Identity = 127/197 (64.47%), Postives = 146/197 (74.11%), Query Frame = -3
Query:  234 TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 824
            TIKLWNTLG CKYTIQ+ + HTEWVSCVRFSPN+  P IVS  WD+ VKVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY+LD+G VI+ALCFSPNRYWLCAAT  SIKIWDLE K IV++L+ ++                      CTSL WS DG TLF+GYTD +IRVW +
Sbjct:  128 TIKLWNTLGVCKYTIQD-EGHTEWVSCVRFSPNSSNPIIVSCGWDKMVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDSGDVINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELRQEVISTNSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLIRVWQV 312          
The following BLAST results are available for this feature:
BLAST of CX671426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
GBLP_MEDSA1.462e-9583.50Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_SOYBN4.254e-9583.50Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_ARATH1.513e-9281.59Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_TOBAC4.867e-9178.00Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_NICPL4.867e-9177.50Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_BRANA8.302e-9180.10Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_ORYSJ1.017e-8070.59Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_CHLRE5.582e-7970.20Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_DANRE4.284e-7164.97Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_ORENI1.628e-7064.47Guanine nucleotide-binding protein subunit beta-2-... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11A04_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11A04-B7-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671426 ID=CX671426; Name=CX671426; organism=Citrus sinensis; type=EST; length=826bp
TTTTTTTTTTTTTTTTTAATGTAACACATCTAAAATAATAAGCCAAACCA
AAACACCAGAGGCCTCAAAGCCATATAAGATCCAAATAAAGAGAACAAAA
TATCCTTAAAAACATTTTGAACAAAATCTTAAATCTTAAATAGGTCTGAA
ACTGCCTACAAAGTCGAGAAACTAGTTTGTAATCGAAAAAGAACAGCAGT
TTGCAATTACTCAAGCAGTTTTCAATAACGGCCAATACCCCAGACTCTGA
TCACACCATCTGTATAACCACTGAACAAGGTGCTTCCATCAACACTCCAG
TTCAAGCTTGTGCAGTAAATGTTCTTCTTTTTTATGGTGGTGGTGGCGGT
GGTGGCCTCAGATTTCTCGGCCTCGGTCTTAAGATCAACCTTAAGATCCT
CGACAATGCTCTTGCTCTCCAAATCCCAGATCTTTATACTCTGCTCAGTC
GCCGCACACAACCAATACCTATTAGGACTGAAGCAGAGCGCGTGAATGAC
AGCACCAGCGTCGAGCGAGTAGAGTCTTTTTCCCTCAGCCAAATCCCACA
ACAGAATCACACCATCTTTCCCTCCACTGGCACACAACGAACCATCCGGC
GACACTGCGACGGTGTTCACGTATCCAGTGTGCCCGGCAAGAGTAGCCCT
AAGCTTGCAGTTGCTCAAATTCCACACTTTGACCGTACGGTCCCACGAGG
CGGAAACGATAGTGGGCTGAAGCGTGTTGGGGCTGAACCTAACACAAGAA
ACCCACTCAGTGTGAGCGTCTCCCTCTTGAATCGTGTACTTGCACTCGCC
GAGCGTGTTCCACAACTTGATCGTAC
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