CX671418

Overview
NameCX671418
Unique NameCX671418
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10130 contig Csv1_Contig10130:1031..1910. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX671418 vs. ExPASy Swiss-Prot
Match: Y4105_ARATH (Uncharacterized protein At4g01050 OS=Arabidopsis thaliana GN=At4g01050 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 2.156e-31
Identity = 85/169 (50.30%), Postives = 99/169 (58.58%), Query Frame = -2 
Query:  469 FGISEIETILQILGSAALVQFASKKLLFAEDRKQTLQQVDEFLNTKVAPKELADDIKQIGKTLLPSPANGKALPA---------------------------------STDSKVQKADDSPEAVPQPKVEAAADPPPQVNSVPKTEVKADSLPRFQRSLSPYPAYPDLK 876
            F  +EIETILQ+LGSAALVQ A KKLLFAEDRKQTL+QVDEFLNTKVAPKEL D++K+IGK LLP   + KALPA                                 + D  V + +  PE VP P +EAA     QV + P TE +A   P   R LSPY +YPDLK
Sbjct:  292 FAFTEIETILQLLGSAALVQLAGKKLLFAEDRKQTLKQVDEFLNTKVAPKELVDELKEIGKALLPQSTSNKALPAPATVTAEAESATATTTTVDKPVPEPETVAATTTTVDKPVPEPEPVPEPVPVPAIEAAV--AAQVITEP-TETEAKPKPH-SRPLSPYASYPDLK 456
The following BLAST results are available for this feature:
BLAST of CX671418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4105_ARATH2.156e-3150.30Uncharacterized protein At4g01050 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_10H11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10H11-O22-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671418 ID=CX671418; Name=CX671418; organism=Citrus sinensis; type=EST; length=880bp
TTTTTTTCAACAAACCATTATCTTATAACCTTATGCAATGCTCCATAATA
CAATACATTTAACAATATAACAATATAATAATTAACAATATAATGTGCCA
AACGCATCCTTTACATATCTCTATCTAATAAAGAAACCATGGATGATCCA
ATTCAATAGACACACAAGTGGCTCTGGCTTATGCAGGCATACGAAGCAAA
TCTACAAGACATCTGTGACCATTGCAAAAAGTAAATCAAGCAGCATAAAG
AACACAACATGATGAATGTGGCCGACTGACTATTTCGTGATATAAGCAAT
TCGTCGCGACACATTGGACTAAAAGTTTCAATAATAACTGCAGATTGCAC
AACTCACTAGGTAGCTTTCATATTCCCAACCATAGCAGTTGCCTGTTATA
GAAACATACTTGCAGATGCTTAAATCTGTAACAATCTAGGGCTGTGATGG
GGTAGGAGAAGTTGGAGGCTTCAAATCTGGATAAGCAGGGTATGGTGAAA
GAGATCTTTGAAATCTAGGAAGTGAGTCTGCTTTAACTTCTGTTTTGGGC
ACCGAATTTACTTGGGGAGGGGGGTCTGCAGCTGCTTCTACTTTTGGCTG
GGGGACAGCCTCAGGTGAATCATCTGCCTTCTGGACTTTGCTGTCAGTGG
AGGCAGGGAGAGCCTTGCCATTTGCCGGTGATGGTAGAAGTGTCTTTCCA
ATTTGCTTTATGTCATCAGCAAGCTCTTTAGGGGCGACCTTGGTGTTCAG
GAATTCATCAACCTGTTGTAGTGTTTGTTTCCGATCCTCTGCAAACAGGA
GCTTCTTGCTAGCAAATTGAACAAGAGCAGCTGAGCCTAGAATTTGCAAT
ATCGTTTCTATCTCTGAAATGCCAAAACAC
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