CX671384

Overview
NameCX671384
Unique NameCX671384
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5050 contig Csv1_Contig5050:1..803. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671384 vs. ExPASy Swiss-Prot
Match: ATX3H_ARATH (Ataxin-3 homolog OS=Arabidopsis thaliana GN=At3g54130 PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 2.485e-68
Identity = 127/171 (74.27%), Postives = 142/171 (83.04%), Query Frame = -1
Query:  306 QKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKECPI-SSSDSSNGYGQWLSPEDAERITKSCNT----REGPKRIKLTQQHSDPFLSAEEADRLLEMEDEDLKAAIAASLLD 803
            QKALEVWDLQVIPLNCP AEPAQIDPELE+AFICHLHDHWFCIRKVNGEWYNFDSL AAP+HLSKFYLSA+LDSLKG GWSIFIV+GNFP+ECP+ SSS++SN +GQWLSPEDAERI K+ ++    R       + QQ  +  LS EE     EMED+DLKAAIAASLLD
Sbjct:   88 QKALEVWDLQVIPLNCPDAEPAQIDPELESAFICHLHDHWFCIRKVNGEWYNFDSLLAAPQHLSKFYLSAFLDSLKGAGWSIFIVKGNFPQECPMSSSSEASNSFGQWLSPEDAERIRKNTSSGSSARNKRSNDNVNQQRRNQALSREEVQAFSEMEDDDLKAAIAASLLD 258          
BLAST of CX671384 vs. ExPASy Swiss-Prot
Match: ATX3_ORYSJ (Putative ataxin-3 homolog OS=Oryza sativa subsp. japonica GN=Os01g0851400 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.366e-57
Identity = 108/173 (62.43%), Postives = 131/173 (75.72%), Query Frame = -1
Query:  306 QKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKECPISSSDSSNGYGQWLSPEDAERITKSCNTREGPKRIKLTQQHSDPFLSAEEADRLLEM-------EDEDLKAAIAASLLD 803
            QKALEVWDLQVIPL+ P       DPELE AFICHL DHWFCIRKVNGEWYNF+SLY APEHLSKFYLSA++D+LKG GWSIF VRGNFPKECP+ +++ SNG+GQWL+P+DA RIT SCN      +++   Q +   L A++++ + EM       E+ DL AAIAASL+D
Sbjct:   94 QKALEVWDLQVIPLDSPDVGSCLFDPELETAFICHLQDHWFCIRKVNGEWYNFNSLYPAPEHLSKFYLSAFIDTLKGSGWSIFAVRGNFPKECPM-ATEGSNGFGQWLTPDDARRITSSCN------QVQTPTQQAGVSLVADQSEEMSEMDMIAAQQEEADLNAAIAASLMD 259          
BLAST of CX671384 vs. ExPASy Swiss-Prot
Match: ATX3_HUMAN (Ataxin-3 OS=Homo sapiens GN=ATXN3 PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 5.253e-18
Identity = 53/164 (32.32%), Postives = 90/164 (54.88%), Query Frame = -1
Query:  315 ALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKECPISSSDSSNGYGQWLSPEDAERITKSCNTREGPKRIKLTQQHS---DPFLSAEEADRLLEMEDEDLKAAIAAS 797
            AL+VW L++I  N P  +  +IDP  E +FIC+  +HWF +RK+  +W+N +SL   PE +S  YL+ +L  L+  G+SIF+V+G+ P +C            Q L     +++ +     E   ++K  + H    +  L A +   +L+ ++EDL+ A+A S
Sbjct:   83 ALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLP-DCEAD---------QLLQMIRVQQMHRPKLIGEELAQLKEQRVHKTDLERVLEANDGSGMLDEDEEDLQRALALS 236          
BLAST of CX671384 vs. ExPASy Swiss-Prot
Match: ATX3_CHICK (Ataxin-3 OS=Gallus gallus GN=ATXN3 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.808e-17
Identity = 50/178 (28.09%), Postives = 90/178 (50.56%), Query Frame = -1
Query:  312 ALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFP----------------KECPISSSDSSNGYGQWLSPEDAERITKSCNTREGPKRIKLTQQHSDPFLSAEEADRLLEMEDEDLKAAIAASL 797
            AL+VW L++I  N P  +   IDP  E +FIC+  +HWF +RK+  +W+N +SL   PE +S  YL+ +L  L+  G+SIF+V+G+ P                +   +   +++    Q L   D ++  +  +  +G   +   +++    L+    +  +E E+ DL+ AI  S+
Sbjct:   83 ALKVWGLELILFNSPEYQRLGIDPINEKSFICNYKEHWFTVRKLGKQWFNLNSLLMGPELISDTYLALFLAQLQQEGYSIFVVKGDLPDCEADQLLQMIRVQQVQRPKLIGEETAQSRDQRLPRSDVDQAIEVSHPFDGTGMLDEDEENFQRALALSRQEIDMEDEEADLRRAIQLSM 260          
BLAST of CX671384 vs. ExPASy Swiss-Prot
Match: ATX3_MOUSE (Ataxin-3 OS=Mus musculus GN=Atxn3 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 9.907e-17
Identity = 49/161 (30.43%), Postives = 85/161 (52.80%), Query Frame = -1
Query:  315 ALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKECPISSSDSSNGYGQWLSPEDAERITKSCNTREGPKRIKLTQQHSDPFLSAEEADRLLEMEDEDLKAAIAAS 797
            AL+VW L++I  N P  +  +IDP  E +FIC+  +HWF +RK+  +W+N +SL   PE +S  YL+ +L  L+  G+SIF+V+G+ P +C       ++   Q +  +   R           K     +   +  L A +   + + +++DL+ A+A S
Sbjct:   83 ALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLP-DC------EADQLLQMIKVQQMHRPKLIGEELAHLKEQSALKADLERVLEAADGSGIFDEDEDDLQRALAIS 236          
BLAST of CX671384 vs. ExPASy Swiss-Prot
Match: ATX3_RAT (Ataxin-3 OS=Rattus norvegicus GN=Atxn3 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.294e-16
Identity = 38/88 (43.18%), Postives = 59/88 (67.05%), Query Frame = -1
Query:  534 ALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFP 797
            AL+VW L++I  N P  +  +IDP  E +FIC+  +HWF +RK+  +W+N +SL   PE +S  YL+ +L  L+  G+SIF+V+G+ P
Sbjct:   83 ALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLP 170          
BLAST of CX671384 vs. ExPASy Swiss-Prot
Match: ATX3L_HUMAN (Putative ataxin-3-like protein OS=Homo sapiens GN=ATXN3L PE=5 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.436e-15
Identity = 54/174 (31.03%), Postives = 83/174 (47.70%), Query Frame = -1
Query:  312 ALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKEC---------PISSSDSSNGYGQWLSPEDAERITKSC--NTREGPKRIKLTQQHSDPFLSAEEADRL-LEMEDEDLKAAIAASL 797
            AL+ W L++I  N P  +   IDP  E +FIC+   HWF IRK    W+N +SL A PE +S   L+ +L  L+   +S+F+V+G+ P +C          +   D+    G+ L  +   R+ K+      E       + Q  + F  A E  R     EDE L++ I  S+
Sbjct:   83 ALKFWGLEIIHFNNPEYQKLGIDPINERSFICNYKQHWFTIRKFGKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKGDLP-DCEADQLLQIISVEEMDTPKLNGKKLVKQKEHRVYKTVLEKVSEESDESGTSDQDEEDFQRALELSRQETNREDEHLRSTIELSM 255          
BLAST of CX671384 vs. ExPASy Swiss-Prot
Match: ATX3_CAEEL (Ataxin-3 homolog OS=Caenorhabditis elegans GN=atx-3 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.596e-12
Identity = 31/91 (34.07%), Postives = 54/91 (59.34%), Query Frame = -1
Query:  531 QKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPK 803
            +KALE + L++  +  P     + +P    A+IC+L +HWF +RK   +W+  +S+   P+ LS  Y+S +L  +   G+SIF+V+G  P+
Sbjct:   79 EKALETFSLKLTNIENPAMVDYKNNPLTARAYICNLREHWFVLRKFGNQWFELNSVNRGPKLLSDTYVSMFLHQVSSEGYSIFVVQGVLPR 169          
The following BLAST results are available for this feature:
BLAST of CX671384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
ATX3H_ARATH2.485e-6874.27Ataxin-3 homolog OS=Arabidopsis thaliana GN=At3g54... [more]
ATX3_ORYSJ3.366e-5762.43Putative ataxin-3 homolog OS=Oryza sativa subsp. j... [more]
ATX3_HUMAN5.253e-1832.32Ataxin-3 OS=Homo sapiens GN=ATXN3 PE=1 SV=3[more]
ATX3_CHICK5.808e-1728.09Ataxin-3 OS=Gallus gallus GN=ATXN3 PE=2 SV=1[more]
ATX3_MOUSE9.907e-1730.43Ataxin-3 OS=Mus musculus GN=Atxn3 PE=1 SV=2[more]
ATX3_RAT1.294e-1643.18Ataxin-3 OS=Rattus norvegicus GN=Atxn3 PE=2 SV=1[more]
ATX3L_HUMAN5.436e-1531.03Putative ataxin-3-like protein OS=Homo sapiens GN=... [more]
ATX3_CAEEL9.596e-1234.07Ataxin-3 homolog OS=Caenorhabditis elegans GN=atx-... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_10G05_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10G05-M10-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671384 ID=CX671384; Name=CX671384; organism=Citrus sinensis; type=EST; length=803bp
TTTTTTTTTTTTTTTTTGCGAAGCTGAAATGTCATTTCTCAAAGAAGTTT
TTGGTAATGTTAGTTTAGATTTTTGACAAAGTACAATAATGAATGTATAT
AAACAAAAAATGCATTACGTCAAGGATACATATCCAAGTTCACATCTTCT
CTGGCATCAATTATTACATACAATTCAACCAGCAGATAAATGTATGAACG
GAATTAATCTTCTTGTGCAGTTTTCTCTTTGCTAATTTCTTTTTCATTTT
CCAGGGTGCTTGCTGTGGTGCTGCTGGCTTCCGCAGTAGGCTTAGCTGGG
GAAGAATCCAACAGACTCGCAGCTATTGCAGCCTTCAAGTCCTCATCTTC
CATCTCCAAAAGCCTATCTGCCTCCTCCGCAGAAAGAAATGGATCAGAAT
GCTGTTGAGTCAATTTGATTCTCTTTGGGCCCTCTCTTGTGTTGCATGAT
TTGGTAATCCTCTCCGCATCTTCAGGAGAAAGCCACTGCCCATAACCATT
GGAAGAATCAGAGGATGAGATGGGGCACTCTTTCGGGAAGTTTCCCCTCA
CAATGAAAATACTCCAGCCAAAGCCTTTTAGCGAATCCAGATAGGCTGAC
AGGTAAAACTTTGAGAGGTGCTCTGGGGCTGCATAAAGACTGTCAAAATT
ATACCATTCTCCATTCACTTTCCTGATACAGAACCAGTGGTCGTGCAAAT
GACAGATAAATGCATTTTCTAGCTCAGGGTCAATCTGGGCAGGTTCAGCA
ATTGGGCAGTTAAGGGGAATGACTTGCAGATCCCACACCTCTAAAGCCTT
TTG
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