CX671383

Overview
NameCX671383
Unique NameCX671383
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5049 contig Csv1_Contig5049:1..849. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX671383 vs. ExPASy Swiss-Prot
Match: DHRSX_HUMAN (Dehydrogenase/reductase SDR family member on chromosome X OS=Homo sapiens GN=DHRSX PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.608e-12
Identity = 47/174 (27.01%), Postives = 81/174 (46.55%), Query Frame = 1 
Query:  334 REGFHVVLVGRSSHLLSETMADITSRNKDARLEAFQVDLSSFQSVLKFKDSLQQWLLDSDMHSSIQLLINNAGILATSSRLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVP---SRIVNVTSFTHRNVFNAQVNNETITGKFFLRSKCYPCARIYEYSKLCLLIFSYELHR 846
            R G HV++ G +     + ++ I     + ++E    DL+S  S+ +F    +   +       + +LINNAG++    R T +G+++    NY+G F            S  P   +R+V V+S TH   + A++N + +       S CY     Y  SKL L++F+Y L R
Sbjct:   65 RLGMHVIIAGNNDSKAKQVVSKIKEETLNDKVEFLYCDLASMTSIRQFVQKFKMKKIP------LHVLINNAGVMMVPQRKTRDGFEEHFGLNYLGHFLLTNLLLDTLKESGSPGHSARVVTVSSATH---YVAELNMDDLQS-----SACYSPHAAYAQSKLALVLFTYHLQR 224
The following BLAST results are available for this feature:
BLAST of CX671383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DHRSX_HUMAN3.608e-1227.01Dehydrogenase/reductase SDR family member on chrom... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_10G04_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10G04-M8-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671383 ID=CX671383; Name=CX671383; organism=Citrus sinensis; type=EST; length=849bp
ATTCAATCGCCCATCAACTGACCGCCTCATGCTCCCAAGTCACAGCAGCT
GCTTCCGTTAGCCACCTGAAAATTGAAAACCACCCAACCAGTTATGAAAG
AGTTGAAAGCGGTAATCCATTTTGTATGCTCAGTGGAGTTCTGGAGAATG
GCATTGCTCTGGCCTGTTTCCCTTCTGACGTCACACTTCCAATTGTTATT
TCAAAATCTGTTTCCTCGGAAATCTAATCCGTATAAACGCTGTGTTCCTC
CAATTACTGGAATTAAGAGGCCTGTTTGTATTGTTACGGGTGCTACATCT
GGCCTGGGTGCAGCTGCGGCTTATGCTCTTTCGAGGGAAGGCTTTCACGT
TGTTCTCGTCGGGCGTTCGTCCCATTTATTATCAGAGACTATGGCAGACA
TAACTAGTCGGAATAAAGATGCCCGTCTGGAAGCTTTTCAGGTCGACCTG
TCTTCATTCCAGTCAGTCTTGAAGTTCAAAGACTCACTTCAACAGTGGCT
TTTGGATTCGGATATGCATTCATCTATCCAACTCTTGATTAACAATGCTG
GGATATTGGCAACATCGTCTCGACTTACACCTGAAGGCTATGATCAGATG
ATGAGTACAAACTACATTGGTGCTTTCTTTCTGACTAAACTTCTATTACC
GCTTCTCAAGAACAGCCCTGTTCCTTCTAGGATAGTGAATGTTACATCCT
TCACTCATCGAAACGTGTTTAATGCACAGGTCAACAATGAGACCATCACT
GGGAAGTTCTTCCTGAGATCAAAATGTTATCCATGTGCTCGTATCTATGA
GTATTCCAAATTATGTTTACTTATTTTCTCATATGAGCTTCACCGAAAT
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