CX671380

Overview
NameCX671380
Unique NameCX671380
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1550 contig Csv1_Contig1550:968..1829. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671380 vs. ExPASy Swiss-Prot
Match: DCE_PETHY (Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.469e-85
Identity = 152/222 (68.47%), Postives = 182/222 (81.98%), Query Frame = -2
Query:  196 VSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHVIPMVNETQGDKPLKKSVRETQEEVTRHWKRFVKGRR 861
            VSGHKYGLVYAG+GWVVWR KDDLPDEL+FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLG+EGYKN+MENC  NA  LREGLEKTGRF I+SK++GVPLVAFSLKD+  H  FEISE LR+FGWIVPAYTMP NA+++ VLRVV+REDFSR+L ERL+  IE+VL E+++LP+RV+ K A V        G +  KK+  E Q E+   WK+FV+ ++
Sbjct:  273 VSGHKYGLVYAGIGWVVWRNKDDLPDELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYKNVMENCQENASVLREGLEKTGRFNIISKEIGVPLVAFSLKDNRQHNEFEISETLRRFGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVRDIEKVLHELDTLPARVNAKLA-VAEEQAAANGSEVHKKTDSEVQLEMITAWKKFVEEKK 493          
BLAST of CX671380 vs. ExPASy Swiss-Prot
Match: DCE_SOLLC (Glutamate decarboxylase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.919e-85
Identity = 150/229 (65.50%), Postives = 186/229 (81.22%), Query Frame = -2
Query:  184 VSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHV-IPMVNETQGD--KPLKKSVRETQEEVTRHWKRFVKGRRAGAC 861
            VSGHKYGLVYAGVGWV+WR+K+DLPDELVFHINYLGSDQPTFTLNFSKGS QIIAQYYQ IRLGFEGYKN+M+NC+ NA+ L EG+ K GRF+I+SKDVGVP+VAFSL+DSS +TVFE+SE LR+FGWIVPAYTMP +AE++AVLRVV+REDFS SL ERL+S IE++L E+++ P R+ TK   V    V + +GD          ETQ+++ +HW++    + +G C
Sbjct:  274 VSGHKYGLVYAGVGWVIWRSKEDLPDELVFHINYLGSDQPTFTLNFSKGSYQIIAQYYQLIRLGFEGYKNVMKNCLSNAKVLTEGITKMGRFDIVSKDVGVPVVAFSLRDSSKYTVFEVSEHLRRFGWIVPAYTMPPDAEHIAVLRVVIREDFSHSLAERLVSDIEKILSELDTQPPRLPTKAVRVTAEEVRDDKGDGLHHFHMDTVETQKDIIKHWRKIAGKKTSGVC 502          
BLAST of CX671380 vs. ExPASy Swiss-Prot
Match: DCE1_ARATH (Glutamate decarboxylase 1 OS=Arabidopsis thaliana GN=GAD1 PE=1 SV=2)

HSP 1 Score: 302.368 bits (773), Expect = 2.195e-81
Identity = 149/231 (64.50%), Postives = 184/231 (79.65%), Query Frame = -2
Query:  184 VSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHVIPMVNETQGDK---PLKKSVRETQEEVTRHWKRFVKGRR--AGAC 861
            VSGHKYGLVYAG+GWV+WR K+DLP+EL+FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLG EGY+N+MENC  N   LREGLEKT RF I+SKD GVPLVAFSLKDSS HT FEIS+ LR++GWIVPAYTMP NA+++ VLRVV+REDFSR+L ERL+  IE+V++E++ LPSRV  K + +    +E+  D     +KKS  + Q ++   WK+FV  R+  +G C
Sbjct:  273 VSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELDELPSRVIHKIS-LGQEKSESNSDNLMVTVKKSDIDKQRDIITGWKKFVADRKKTSGIC 502          
BLAST of CX671380 vs. ExPASy Swiss-Prot
Match: DCE2_ARATH (Glutamate decarboxylase 2 OS=Arabidopsis thaliana GN=GAD2 PE=1 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 1.423e-80
Identity = 149/228 (65.35%), Postives = 182/228 (79.82%), Query Frame = -2
Query:  184 VSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHVIPMVNETQGDKPLKKSVRETQEEVTRHWKRFVKGRRA--GAC 861
            VSGHKYGLVYAG+GWVVWR  +DLP+EL+FHINYLG+DQPTFTLNFSKGSSQIIAQYYQ IRLGFEGYKN+MENC+ N   L+EG+EKT RF I+SKD GVP+VAFSLKD S H  FEISE LR+FGWIVPAYTMPA+A+++ VLRVV+REDFSR+L ERL++ I +VL E+++LPS++S K    I  + E   +K ++K   E   EV   W++FVK R+   G C
Sbjct:  272 VSGHKYGLVYAGIGWVVWRAAEDLPEELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGFEGYKNVMENCIENMVVLKEGIEKTERFNIVSKDQGVPVVAFSLKDHSFHNEFEISEMLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVADISKVLHELDTLPSKISKKMG--IEGIAENVKEKKMEK---EILMEVIVGWRKFVKERKKMNGVC 494          
BLAST of CX671380 vs. ExPASy Swiss-Prot
Match: DCE_LACLM (Glutamate decarboxylase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gadB PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 2.455e-40
Identity = 77/170 (45.29%), Postives = 112/170 (65.88%), Query Frame = -2
Query:  355 SGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVL 858
            SGHKYGLVY GVGWV+WR K  LP+EL+F ++YLG + PT  +NFS  +SQ+I QYY F+R GF+GYK I E     A  L E +EKTG FEI++    +P+V + LK++S     ++++++ L   GW VPAY +P N EN  + R+V+R DF  ++    +  ++E +
Sbjct:  274 SGHKYGLVYPGVGWVLWRDKKYLPEELIFKVSYLGGELPTMAINFSHSASQLIGQYYNFVRYGFDGYKAIHERTHKVAMYLAEEIEKTGMFEIMNDGAQLPIVCYKLKENSNRGWNLYDLADRLLMKGWQVPAYPLPKNLENEIIQRLVIRADFGMNMAFNYVQDMQEAI 443          
BLAST of CX671380 vs. ExPASy Swiss-Prot
Match: DCE_LACLA (Glutamate decarboxylase OS=Lactococcus lactis subsp. lactis GN=gadB PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 9.330e-40
Identity = 76/173 (43.93%), Postives = 113/173 (65.32%), Query Frame = -2
Query:  346 SGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEI 858
            SGHKYGLVY GVGWV+WR K  LP+EL+F ++YLG + PT  +NFS  +SQ+I QYY F+R GF+GYK I E     A  L + +EKTG FEI++    +P+V + LK+ S     ++++++ L   GW VPAY +P N EN  + R+V+R DF  ++    +  ++E ++ +
Sbjct:  274 SGHKYGLVYPGVGWVLWRDKKYLPEELIFKVSYLGGELPTMAINFSHSASQLIGQYYNFVRYGFDGYKAIHERTHKVAMFLAKEIEKTGMFEIMNDGSQLPIVCYKLKEDSNRGWNLYDLADRLLMKGWQVPAYPLPKNLENEIIQRLVIRADFGMNMAFNYVQDMQEAIEAL 446          
BLAST of CX671380 vs. ExPASy Swiss-Prot
Match: DCEA_LISMO (Glutamate decarboxylase alpha OS=Listeria monocytogenes GN=gadA PE=3 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 6.048e-39
Identity = 78/189 (41.27%), Postives = 117/189 (61.90%), Query Frame = -2
Query:  307 SGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIES---LPSRVSTKTAH 858
            SGHKYGLVY GVGW++WR K+ LP+ELVF ++YLG   PT  +NFS+ +SQII QYY F+R G+EGY+ I       A  L + + +TG FEI +    +P+V + LKD +  A T++++++ L+  GW VPAY +P    N  + R V R D  +++V    + + E ++E+ +   L   V+T   H
Sbjct:  270 SGHKYGLVYPGVGWILWRDKEYLPEELVFDVSYLGGHMPTMAINFSRSASQIIGQYYNFLRFGYEGYRQIHMRTRDGALQLSQAVAETGLFEIYNDGANLPIVCYKLKDDANVAWTLYDLADRLQMKGWQVPAYPLPKEMGNTIIQRYVCRGDLGQNMVTAFKNDLSESIEELNNAHILYHDVNTSKTH 458          
BLAST of CX671380 vs. ExPASy Swiss-Prot
Match: DCEB_LISIN (Glutamate decarboxylase beta OS=Listeria innocua GN=gadB PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 7.898e-39
Identity = 72/175 (41.14%), Postives = 113/175 (64.57%), Query Frame = -2
Query:  340 SGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIES 858
            SGHKYGLVY G+GWV+W+ +  LP+EL+F ++YLG + PT  +NFS+ +S II QYY F+R GFEGY+ I +     A+ L   +E+TG F+I +    +P+V + LKD +    T++++++ L+  GW VPAY +P N EN+ + R V R D   ++ E  I   +  ++E+ +
Sbjct:  272 SGHKYGLVYPGIGWVLWKDESYLPEELIFKVSYLGGEMPTMQINFSRSASHIIGQYYNFLRYGFEGYRTIHQKTSDVAQYLAHAVEQTGYFDIYNDGSHLPIVCYKLKDDANVKWTLYDLADRLQMRGWQVPAYPLPKNLENIIIQRYVCRADLGFNMAEEFIQDFQASIQELNN 446          
BLAST of CX671380 vs. ExPASy Swiss-Prot
Match: DCEC_LISIN (Probable glutamate decarboxylase gamma OS=Listeria innocua GN=lin2528 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.001e-38
Identity = 74/174 (42.53%), Postives = 109/174 (62.64%), Query Frame = -2
Query:  343 SGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKD--SSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIE 858
            SGHKYGLVY GVGW++W+ K+ LP EL+F ++YLG   PT  +NFS+ +SQII QYY F+R GFEGY+ I E     A  L + +EK+G FEI++    +P+V + LKD      T++++++ L   GW VPAY +PA+  +  + R V R D   ++ E   +   + L  +E
Sbjct:  275 SGHKYGLVYPGVGWILWKDKEYLPKELIFEVSYLGGSMPTMAINFSRSASQIIGQYYNFLRYGFEGYREIHEKTKKTALYLSKTVEKSGYFEIINDGSNLPIVCYKLKDDLDVEWTLYDLADQLLMKGWQVPAYPLPADLSDTIIQRFVCRADLGYNVAEEFAADFADALHNLE 448          
BLAST of CX671380 vs. ExPASy Swiss-Prot
Match: DCEB_LISMO (Glutamate decarboxylase beta OS=Listeria monocytogenes GN=gadB PE=3 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 3.001e-38
Identity = 71/175 (40.57%), Postives = 113/175 (64.57%), Query Frame = -2
Query:  340 SGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIES 858
            SGHKYGLVY G+GWV+W+ +  LP+EL+F ++YLG + PT  +NFS+ +S II QYY F+R GFEGY+ I +     A+ L   +E+TG F+I +    +P+V + LKD +    T++++++ L+  GW VPAY +P + EN+ + R V R D   ++ E  I   +  ++E+ +
Sbjct:  272 SGHKYGLVYPGIGWVLWKDESYLPEELIFKVSYLGGEMPTMQINFSRSASHIIGQYYNFLRYGFEGYRTIHQKTSDVAQYLAHAVEQTGYFDIFNDGSHLPIVCYKLKDDANVNWTLYDLADRLQMRGWQVPAYPLPKSLENIIIQRYVCRADLGFNMAEEFIQDFQASIQELNN 446          
The following BLAST results are available for this feature:
BLAST of CX671380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCE_PETHY1.469e-8568.47Glutamate decarboxylase OS=Petunia hybrida GN=GAD ... [more]
DCE_SOLLC1.919e-8565.50Glutamate decarboxylase OS=Solanum lycopersicum PE... [more]
DCE1_ARATH2.195e-8164.50Glutamate decarboxylase 1 OS=Arabidopsis thaliana ... [more]
DCE2_ARATH1.423e-8065.35Glutamate decarboxylase 2 OS=Arabidopsis thaliana ... [more]
DCE_LACLM2.455e-4045.29Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCE_LACLA9.330e-4043.93Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCEA_LISMO6.048e-3941.27Glutamate decarboxylase alpha OS=Listeria monocyto... [more]
DCEB_LISIN7.898e-3941.14Glutamate decarboxylase beta OS=Listeria innocua G... [more]
DCEC_LISIN3.001e-3842.53Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCEB_LISMO3.001e-3840.57Glutamate decarboxylase beta OS=Listeria monocytog... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10G03_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10G03-M6-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671380 ID=CX671380; Name=CX671380; organism=Citrus sinensis; type=EST; length=862bp
AAGCAATAAGCATATACCTCTATTTGCCACTTCACAAGCGTGCAAGAAAA
CATAAATAGGCTTCAACAATCACATAAAGTAAACACACCTTCAAGTACGA
ATATACAGAAAACAGGAAGAAGCAATAGCTTTAATATTCAAACAAGCATA
CAAATCTTGTCTCATCTTATGTTTGGAACCTCAGCATGCTCCAGCTCTCC
GGCCTTTCACGAACCTCTTCCAGTGCCTGGTGACTTCCTCCTGAGTCTCC
CTCACACTCTTCTTAAGTGGCTTATCACCCTGAGTTTCGTTGACCATGGG
TATGACATGGGCAGTTTTTGTGGATACACGACTTGGAAGCGATTCAATTT
CCTTCAAAACTTCCTCGATGTGTGAGATGAGTCTTTCCACCAAGCTACGG
CTGAAATCCTCCCTGACAACCACCCGAAGAACCGCCACATTTTCAGCATT
AGCAGGCATTGTATAGGCCGGAACTATCCACCCAAACTTTCTCAAACCCT
CGGATATCTCAAACACGGTGTGTGCGCTGCTGTCCTTCAAAGAAAAGGCT
ACTAAGGGTACGCCAACATCCTTGGAGAGAATTTCAAAGCGCCCTGTTTT
CTCTAATCCTTCTCTTAGCGCTCTAGCATTCCCCATGCAATTTTCCATAA
TGTTCTTGTAACCCTCAAAGCCAAGCCGTATAAACTGATAATATTGAGCA
ATTATTTGACTGGAGCCTTTTGAGAAGTTGAGGGTGAAAGTCGGTTGATC
AGATCCAAGGTAGTTGATGTGAAAGACAAGTTCATCCGGCAAGTCATCTT
TGGTCCTCCAGACAACCCAGCCAACACCTGCATATACAAGGCCGTACTTG
TGACCACTGACA
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