CX671366

Overview
NameCX671366
Unique NameCX671366
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6956 contig Csv1_Contig6956:1249..1821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX671366 vs. ExPASy Swiss-Prot
Match: DHAR1_ARATH (Glutathione S-transferase DHAR1, mitochondrial OS=Arabidopsis thaliana GN=DHAR1 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.175e-48
Identity = 91/127 (71.65%), Postives = 107/127 (84.25%), Query Frame = 3 
Query:    3 EPSLTNPPEFASLGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKTKAEKQYVIAGWAPKVN 383
            +P L  P EFAS+GS IF +F  FLKSKD NDG+E ALL EL+AL+ HLK+H GPFIAGE+V+AVDLSLAPKLYHLQVAL HFK W+VPES  HVH YMK LF+L+SF+KTK E++YVI+GWAPKVN
Sbjct:   86 DPPLKTPAEFASVGSNIFGTFGTFLKSKDSNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVALGHFKSWSVPESFPHVHNYMKTLFSLDSFEKTKTEEKYVISGWAPKVN 212
The following BLAST results are available for this feature:
BLAST of CX671366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DHAR1_ARATH1.175e-4871.65Glutathione S-transferase DHAR1, mitochondrial OS=... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_10F07_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10F07-K14-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671366 ID=CX671366; Name=CX671366; organism=Citrus sinensis; type=EST; length=574bp
CTGAGCCTTCTCTTACCAATCCTCCTGAATTTGCCTCTCTTGGATCAAAG
ATATTCCCATCTTTTGTCAATTTCTTGAAGAGCAAGGACCCAAATGATGG
GACAGAGCAAGCTTTGCTGGAGGAATTGAAAGCATTGGATGAGCATCTTA
AGACCCATGGAGGTCCATTCATTGCTGGAGAGAAGGTCACTGCTGTAGAT
TTGAGCTTGGCACCAAAGCTGTACCACCTTCAGGTAGCTCTTGAACATTT
CAAGCAGTGGACTGTCCCTGAGAGCTTGGCTCATGTCCATGGGTACATGA
AGAAGCTTTTTGCCCTGGAATCCTTTCAGAAGACTAAGGCTGAAAAGCAA
TACGTGATTGCAGGATGGGCGCCGAAGGTCAATGCATGAACTAGTTCTAA
GCTATGCGGTGTTTGAAATCTAGCTAATGAAATGCGAGTAATGTATGTGT
GAGACTTGGAGCATAATTAGAATGTTCACTGGGGGTTTGTATCATCCAAT
AAAGGTAGCTACAATGATATTTGCTATTTGTTATAATGAAACCTCCTGGT
TGAATGGTATTTACTCTTTAAAAA
back to top