CX671360

Overview
NameCX671360
Unique NameCX671360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671360_ssr281 microsatellite CX671360_ssr281:281..298. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig174 contig Csv1_Contig174:1..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671360 vs. ExPASy Swiss-Prot
Match: SPOP_XENTR (Speckle-type POZ protein OS=Xenopus tropicalis GN=spop PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.556e-14
Identity = 41/106 (38.68%), Postives = 64/106 (60.38%), Query Frame = 1
Query:  415 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAXQLLEAALSLI 732
            +RSPVF AM ++EMEES+   ++I DV  D  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE+ L S L+ +N+      A  H+A QL   A+  I
Sbjct:  220 ARSPVFSAMFEHEMEESKKNRVEIKDVEPDVFKEMMCFIYTGKASNLDKMADDLLAAADKYALERLKVMCEEALCSNLSVENAAEILILADLHSADQLKTQAVDFI 325          
BLAST of CX671360 vs. ExPASy Swiss-Prot
Match: SPOPB_XENLA (Speckle-type POZ protein B OS=Xenopus laevis GN=spop-B PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.556e-14
Identity = 41/106 (38.68%), Postives = 64/106 (60.38%), Query Frame = 1
Query:  415 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAXQLLEAALSLI 732
            +RSPVF AM ++EMEES+   ++I DV  D  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE+ L S L+ +N+      A  H+A QL   A+  I
Sbjct:  220 ARSPVFSAMFEHEMEESKKNRVEIKDVEPDVFKEMMCFIYTGKASNLDKMADDLLAAADKYALERLKVMCEEALCSNLSVENAAEILILADLHSADQLKTQAVDFI 325          
BLAST of CX671360 vs. ExPASy Swiss-Prot
Match: SPOPA_XENLA (Speckle-type POZ protein A OS=Xenopus laevis GN=spop-A PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.556e-14
Identity = 41/106 (38.68%), Postives = 64/106 (60.38%), Query Frame = 1
Query:  415 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAXQLLEAALSLI 732
            +RSPVF AM ++EMEES+   ++I DV  D  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE+ L S L+ +N+      A  H+A QL   A+  I
Sbjct:  220 ARSPVFSAMFEHEMEESKKNRVEIKDVEPDVFKEMMCFIYTGKASNLDKMADDLLAAADKYALERLKVMCEEALCSNLSVENAAEILILADLHSADQLKTQAVDFI 325          
BLAST of CX671360 vs. ExPASy Swiss-Prot
Match: SPOP_PONAB (Speckle-type POZ protein OS=Pongo abelii GN=SPOP PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.657e-13
Identity = 40/106 (37.74%), Postives = 64/106 (60.38%), Query Frame = 1
Query:  415 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAXQLLEAALSLI 732
            +RSPVF AM ++EMEES+   ++I+DV  +  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE  L S L+ +N+      A  H+A QL   A+  I
Sbjct:  220 ARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFI 325          
BLAST of CX671360 vs. ExPASy Swiss-Prot
Match: SPOP_MOUSE (Speckle-type POZ protein OS=Mus musculus GN=Spop PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.657e-13
Identity = 40/106 (37.74%), Postives = 64/106 (60.38%), Query Frame = 1
Query:  415 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAXQLLEAALSLI 732
            +RSPVF AM ++EMEES+   ++I+DV  +  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE  L S L+ +N+      A  H+A QL   A+  I
Sbjct:  220 ARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFI 325          
BLAST of CX671360 vs. ExPASy Swiss-Prot
Match: SPOP_HUMAN (Speckle-type POZ protein OS=Homo sapiens GN=SPOP PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.657e-13
Identity = 40/106 (37.74%), Postives = 64/106 (60.38%), Query Frame = 1
Query:  415 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAXQLLEAALSLI 732
            +RSPVF AM ++EMEES+   ++I+DV  +  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE  L S L+ +N+      A  H+A QL   A+  I
Sbjct:  220 ARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFI 325          
BLAST of CX671360 vs. ExPASy Swiss-Prot
Match: SPOP_BOVIN (Speckle-type POZ protein OS=Bos taurus GN=SPOP PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.657e-13
Identity = 40/106 (37.74%), Postives = 64/106 (60.38%), Query Frame = 1
Query:  415 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAXQLLEAALSLI 732
            +RSPVF AM ++EMEES+   ++I+DV  +  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE  L S L+ +N+      A  H+A QL   A+  I
Sbjct:  220 ARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFI 325          
BLAST of CX671360 vs. ExPASy Swiss-Prot
Match: SPOLA_DANRE (Speckle-type POZ protein-like A OS=Danio rerio GN=spopla PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.657e-13
Identity = 40/106 (37.74%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  415 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAXQLLEAALSLI 732
            +RSPVF AM ++EMEES+   + ISDV  +  +  + ++YT +A   E++A  LL  A+KY ++ LK  CE+ L + L+ +N       A  H+A QL   A+  I
Sbjct:  220 ARSPVFNAMFEHEMEESKKNRVDISDVEPEVFKEMMGFIYTGKAPNLEKMADSLLAAADKYALERLKVMCEEALCNSLSVENVADTLILADLHSAEQLKAQAIDFI 325          
BLAST of CX671360 vs. ExPASy Swiss-Prot
Match: SPOP_DANRE (Speckle-type POZ protein OS=Danio rerio GN=spop PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.826e-13
Identity = 39/106 (36.79%), Postives = 64/106 (60.38%), Query Frame = 1
Query:  415 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAXQLLEAALSLI 732
            +RSPVF AM ++EMEES+   ++I+DV  +  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE  L + L+ +N+      A  H+A QL   A+  I
Sbjct:  220 ARSPVFSAMFEHEMEESKKNRVEINDVEAEVFKEMMFFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCTSLSVENAAEILILADLHSADQLKTQAVDFI 325          
BLAST of CX671360 vs. ExPASy Swiss-Prot
Match: SPOLB_DANRE (Speckle-type POZ protein-like B OS=Danio rerio GN=spoplb PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.826e-13
Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  415 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAXQLLEAALSLI 732
            +RSPVF AM +++MEES+   + ISDV  D  R  + ++YT +A   E++A +LL  A+KY ++ LK  CE+ L + L+ +N       A  H+A QL   A+  I
Sbjct:  220 ARSPVFNAMFEHKMEESKKNRVDISDVEPDVFREMMVFIYTGKAPNLEKMADNLLAAADKYALERLKVLCEEALCNSLSVENVADVLILADLHSAEQLKAQAIDFI 325          
The following BLAST results are available for this feature:
BLAST of CX671360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
SPOP_XENTR2.556e-1438.68Speckle-type POZ protein OS=Xenopus tropicalis GN=... [more]
SPOPB_XENLA2.556e-1438.68Speckle-type POZ protein B OS=Xenopus laevis GN=sp... [more]
SPOPA_XENLA2.556e-1438.68Speckle-type POZ protein A OS=Xenopus laevis GN=sp... [more]
SPOP_PONAB1.657e-1337.74Speckle-type POZ protein OS=Pongo abelii GN=SPOP P... [more]
SPOP_MOUSE1.657e-1337.74Speckle-type POZ protein OS=Mus musculus GN=Spop P... [more]
SPOP_HUMAN1.657e-1337.74Speckle-type POZ protein OS=Homo sapiens GN=SPOP P... [more]
SPOP_BOVIN1.657e-1337.74Speckle-type POZ protein OS=Bos taurus GN=SPOP PE=... [more]
SPOLA_DANRE1.657e-1337.74Speckle-type POZ protein-like A OS=Danio rerio GN=... [more]
SPOP_DANRE2.826e-1336.79Speckle-type POZ protein OS=Danio rerio GN=spop PE... [more]
SPOLB_DANRE2.826e-1338.68Speckle-type POZ protein-like B OS=Danio rerio GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10F04_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10F04-K8-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671360 ID=CX671360; Name=CX671360; organism=Citrus sinensis; type=EST; length=779bp
CCGAGACGGAAACTCCGAGGAGAAAAAAAGATGCGAGGTCGTCGGTGCCA
CTCGACTCGCCACCCAGACATGTCGGGTTCGGGTTCGGGTTCGGGTTTGG
AATCCGAAGCCGAATCTGAAACGATGCGTTGCATCTCCTGCAGGGAGGAG
TACGGGACCCGGGACGCGGGCACATGCAAGGAGTGTTACGAGGAGGCGAG
CGAGACGGAGGAGGAGCTGAAGCGAGAAATCGAAGATCTTAAAGCTAAAG
TCGCCTTTTTAAGGTTTTGGTCTCCACTCGATCATCATCATCATCATCAC
AGCAGTAGGTCCCACTGCGGACCTTGTTATACCGACGTCGTTTTGGTCGC
CGCCTCGGAATCCGGCCCTGCTGGCCCCGCCGTTCCCGTCCCCGCTCATA
AGGCCGTGTTGGTGAGTCGTTCTCCAGTGTTTAAAGCCATGCTAGATAAT
GAAATGGAAGAAAGTCGGAGTGGCACTATAAAGATCAGTGATGTATCATA
TGATGCCCTTCGTGCATTTGTCAATTATTTGTATACTGCAGAAGCTTGCC
TTGATGAGCAATTGGCCTGTGACCTTTTGGAGTTGGCTGAAAAATATCAG
GTGAAGCACCTTAAAGCATACTGTGAGAAGTTCCTGGTATCCAAACTGAA
TTGGGACAATTCTGTTGTGAACTATGCTTTTGCGCACCAGCACAATGCAN
AGCAGTTGCTTGAAGCAGCATTGTCATTGATCACGGACAACATGGACAAG
CTTACCAAGTGCGAGGAGTATAGGGAGCT
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