EY692461

Overview
NameEY692461
Unique NameEY692461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length352
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11139 contig Csv1_Contig11139:150..501. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY692461 vs. ExPASy Swiss-Prot
Match: LEU3_PSEF5 (3-isopropylmalate dehydrogenase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=leuB PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 5.556e-46
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = 2
Query:    2 SASLDANNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFNLTDAADAIEKAVSLVLDQGLRTGDIWSQGCTKVGTQEMGDAVVAALRNL 286
            SASLDANNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFNLT+AADAIE+AVS VLDQGLRTGDIWS GCTKVGTQEMGDAVVAALRNL
Sbjct:  266 SASLDANNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFNLTEAADAIEQAVSRVLDQGLRTGDIWSAGCTKVGTQEMGDAVVAALRNL 360          
BLAST of EY692461 vs. ExPASy Swiss-Prot
Match: LEU3_PSEPF (3-isopropylmalate dehydrogenase OS=Pseudomonas fluorescens (strain Pf0-1) GN=leuB PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 2.334e-44
Identity = 89/95 (93.68%), Postives = 93/95 (97.89%), Query Frame = 2
Query:    2 SASLDANNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFNLTDAADAIEKAVSLVLDQGLRTGDIWSQGCTKVGTQEMGDAVVAALRNL 286
            SASLDANNKGMYEPCHGSAPDIAG+GIANPLATILSVSMMLRYSFNL +AADAIEKAVS+VLDQGLRTGDI+S GCTKVGTQEMGDAVVAALRNL
Sbjct:  266 SASLDANNKGMYEPCHGSAPDIAGKGIANPLATILSVSMMLRYSFNLHEAADAIEKAVSVVLDQGLRTGDIFSTGCTKVGTQEMGDAVVAALRNL 360          
BLAST of EY692461 vs. ExPASy Swiss-Prot
Match: LEU3_PSEU2 (3-isopropylmalate dehydrogenase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=leuB PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 6.791e-44
Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 2
Query:    2 SASLDANNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFNLTDAADAIEKAVSLVLDQGLRTGDIWSQGCTKVGTQEMGDAVVAALRNL 286
            SASLD  NKGMYEPCHGSAPDIAG+GIANPLATILSVSMMLRYSFNLTDAADAIEKAVSLVLDQG+RTGDIWS+G  KVGTQEMGDAVVAALRNL
Sbjct:  266 SASLDTANKGMYEPCHGSAPDIAGKGIANPLATILSVSMMLRYSFNLTDAADAIEKAVSLVLDQGIRTGDIWSEGKVKVGTQEMGDAVVAALRNL 360          
BLAST of EY692461 vs. ExPASy Swiss-Prot
Match: LEU3_PSE14 (3-isopropylmalate dehydrogenase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=leuB PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.513e-43
Identity = 87/95 (91.58%), Postives = 91/95 (95.79%), Query Frame = 2
Query:    2 SASLDANNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFNLTDAADAIEKAVSLVLDQGLRTGDIWSQGCTKVGTQEMGDAVVAALRNL 286
            SASLD  NKGMYEPCHGSAPDIAG+GIANPLATILSVSMMLRYSFNLTDAADAIEKAVS+VLDQG+RTGDIWS+G  KVGTQEMGDAVVAALRNL
Sbjct:  266 SASLDTANKGMYEPCHGSAPDIAGKGIANPLATILSVSMMLRYSFNLTDAADAIEKAVSVVLDQGIRTGDIWSEGKVKVGTQEMGDAVVAALRNL 360          
BLAST of EY692461 vs. ExPASy Swiss-Prot
Match: LEU3_PSEAE (3-isopropylmalate dehydrogenase OS=Pseudomonas aeruginosa GN=leuB PE=3 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 1.281e-42
Identity = 85/95 (89.47%), Postives = 90/95 (94.74%), Query Frame = 2
Query:    2 SASLDANNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFNLTDAADAIEKAVSLVLDQGLRTGDIWSQGCTKVGTQEMGDAVVAALRNL 286
            SASLDANNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSF+   AADAIE+AVS VLDQGLRTGDIWS+GC KVGT+EMGDAVVAAL+NL
Sbjct:  266 SASLDANNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFSQATAADAIEQAVSKVLDQGLRTGDIWSEGCRKVGTREMGDAVVAALKNL 360          
BLAST of EY692461 vs. ExPASy Swiss-Prot
Match: LEU3_PSESM (3-isopropylmalate dehydrogenase OS=Pseudomonas syringae pv. tomato GN=leuB PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.673e-42
Identity = 86/95 (90.53%), Postives = 90/95 (94.74%), Query Frame = 2
Query:    2 SASLDANNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFNLTDAADAIEKAVSLVLDQGLRTGDIWSQGCTKVGTQEMGDAVVAALRNL 286
            SASLD  NKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFNLT AADAIE+AVSLVLDQG+RTGDIWS+G  KVGT+EMGDAVVAALRNL
Sbjct:  266 SASLDTANKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFNLTAAADAIEQAVSLVLDQGIRTGDIWSEGKVKVGTKEMGDAVVAALRNL 360          
BLAST of EY692461 vs. ExPASy Swiss-Prot
Match: LEU3_PSEPK (3-isopropylmalate dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=leuB PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.726e-42
Identity = 86/95 (90.53%), Postives = 91/95 (95.79%), Query Frame = 2
Query:    2 SASLDANNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFNLTDAADAIEKAVSLVLDQGLRTGDIWSQGCTKVGTQEMGDAVVAALRNL 286
            SASLDA+NKGMYEPCHGSAPDIAG GIANPLATILSVSMMLRYSFN + AA+AIEKAVSLVLDQGLRTGDI+S+GC KVGTQEMGDAVVAALRNL
Sbjct:  266 SASLDADNKGMYEPCHGSAPDIAGLGIANPLATILSVSMMLRYSFNQSAAAEAIEKAVSLVLDQGLRTGDIFSEGCRKVGTQEMGDAVVAALRNL 360          
BLAST of EY692461 vs. ExPASy Swiss-Prot
Match: LEU3_AZOVI (3-isopropylmalate dehydrogenase OS=Azotobacter vinelandii GN=leuB PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.568e-38
Identity = 80/96 (83.33%), Postives = 86/96 (89.58%), Query Frame = 2
Query:    2 SASLDANNKGMYEPCHGSA-PDIAGQGIANPLATILSVSMMLRYSFNLTDAADAIEKAVSLVLDQGLRTGDIWSQGCTKVGTQEMGDAVVAALRNL 286
            SASLDA+NKGMYEPCHGS  PDIAG+GIANPLATILSVSMMLRYSF   +AA+AIE+AVS VLDQGLRTGDIWS+GC KVGT EMGDAVVAAL  L
Sbjct:  265 SASLDADNKGMYEPCHGSRRPDIAGKGIANPLATILSVSMMLRYSFGQVEAANAIEQAVSKVLDQGLRTGDIWSEGCRKVGTAEMGDAVVAALATL 360          
BLAST of EY692461 vs. ExPASy Swiss-Prot
Match: LEU3_XANOR (3-isopropylmalate dehydrogenase OS=Xanthomonas oryzae pv. oryzae GN=leuB PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.116e-37
Identity = 77/92 (83.70%), Postives = 83/92 (90.22%), Query Frame = 2
Query:    2 SASLDANNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFNLTDAADAIEKAVSLVLDQGLRTGDIWSQGCTKVGTQEMGDAVVAAL 277
            SASLDAN+KGMYEPCHGSAPDIAG+GIANPLATILSV+MMLRY+F   DAADAIE+AV  VLDQGLRT DIWS+G TKVGT  MGDAVVAAL
Sbjct:  266 SASLDANSKGMYEPCHGSAPDIAGKGIANPLATILSVAMMLRYTFAQADAADAIERAVGKVLDQGLRTADIWSEGTTKVGTVAMGDAVVAAL 357          
BLAST of EY692461 vs. ExPASy Swiss-Prot
Match: LEU3_XANOM (3-isopropylmalate dehydrogenase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=leuB PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.116e-37
Identity = 77/92 (83.70%), Postives = 83/92 (90.22%), Query Frame = 2
Query:    2 SASLDANNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFNLTDAADAIEKAVSLVLDQGLRTGDIWSQGCTKVGTQEMGDAVVAAL 277
            SASLDAN+KGMYEPCHGSAPDIAG+GIANPLATILSV+MMLRY+F   DAADAIE+AV  VLDQGLRT DIWS+G TKVGT  MGDAVVAAL
Sbjct:  266 SASLDANSKGMYEPCHGSAPDIAGKGIANPLATILSVAMMLRYTFAQADAADAIERAVGKVLDQGLRTADIWSEGTTKVGTVAMGDAVVAAL 357          
The following BLAST results are available for this feature:
BLAST of EY692461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 261
Match NameE-valueIdentityDescription
LEU3_PSEF55.556e-4695.793-isopropylmalate dehydrogenase OS=Pseudomonas flu... [more]
LEU3_PSEPF2.334e-4493.683-isopropylmalate dehydrogenase OS=Pseudomonas flu... [more]
LEU3_PSEU26.791e-4492.633-isopropylmalate dehydrogenase OS=Pseudomonas syr... [more]
LEU3_PSE141.513e-4391.583-isopropylmalate dehydrogenase OS=Pseudomonas syr... [more]
LEU3_PSEAE1.281e-4289.473-isopropylmalate dehydrogenase OS=Pseudomonas aer... [more]
LEU3_PSESM1.673e-4290.533-isopropylmalate dehydrogenase OS=Pseudomonas syr... [more]
LEU3_PSEPK3.726e-4290.533-isopropylmalate dehydrogenase OS=Pseudomonas put... [more]
LEU3_AZOVI5.568e-3883.333-isopropylmalate dehydrogenase OS=Azotobacter vin... [more]
LEU3_XANOR2.116e-3783.703-isopropylmalate dehydrogenase OS=Xanthomonas ory... [more]
LEU3_XANOM2.116e-3783.703-isopropylmalate dehydrogenase OS=Xanthomonas ory... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-071-H06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692461 ID=EY692461; Name=EY692461; organism=Citrus sinensis; type=EST; length=352bp
GTCGGCGTCCCTGGATGCCAACAACAAGGGCATGTACGAGCCGTGCCACG
GTTCTGCGCCGGACATCGCAGGGCAGGGCATTGCCAACCCGTTGGCGACC
ATTTTGTCGGTGTCGATGATGCTGCGTTACAGCTTCAACCTGACCGACGC
GGCGGATGCCATCGAAAAGGCTGTGAGCCTGGTGCTGGACCAAGGCCTGC
GCACCGGCGACATCTGGTCCCAGGGTTGCACCAAGGTCGGTACGCAAGAA
ATGGGCGACGCAGTAGTCGCCGCGCTGCGGAATCTGTAATCTCTCGGGCC
CGCTTGCAGATGTTGCTGCAAGGCGGCCCACTTTTGAACAAGGTGTAGTT
GC
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