CX671267

Overview
NameCX671267
Unique NameCX671267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length539
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7745 contig Csv1_Contig7745:67..605. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671267 vs. ExPASy Swiss-Prot
Match: RL373_ARATH (60S ribosomal protein L37-3 OS=Arabidopsis thaliana GN=RPL37C PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.125e-42
Identity = 77/83 (92.77%), Postives = 83/83 (100.00%), Query Frame = 3
Query:   27 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQ 275
            MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLR+VPRRFK+GFREGT+
Sbjct:    1 MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTE 83          
BLAST of CX671267 vs. ExPASy Swiss-Prot
Match: RL371_ARATH (60S ribosomal protein L37-1 OS=Arabidopsis thaliana GN=RPL37A PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.047e-41
Identity = 77/83 (92.77%), Postives = 82/83 (98.80%), Query Frame = 3
Query:   27 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQ 275
            MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLR+VPRRFK+ FREGTQ
Sbjct:    1 MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTCFREGTQ 83          
BLAST of CX671267 vs. ExPASy Swiss-Prot
Match: RL372_ARATH (60S ribosomal protein L37-2 OS=Arabidopsis thaliana GN=RPL37B PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 3.492e-41
Identity = 76/83 (91.57%), Postives = 82/83 (98.80%), Query Frame = 3
Query:   27 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQ 275
            M KGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLR+VPRRFK+GFREGT+
Sbjct:    1 MTKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTE 83          
BLAST of CX671267 vs. ExPASy Swiss-Prot
Match: RL371_DROME (Probable 60S ribosomal protein L37-A OS=Drosophila melanogaster GN=RpL37a PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 8.620e-32
Identity = 62/83 (74.70%), Postives = 71/83 (85.54%), Query Frame = 3
Query:   27 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQ 275
            M KGT SFGKR NKTHTLC RCGR S+H+QKS CA C YPAA+ R+YNWSVKA RRKTTGTGRM++L+ V RRF++GFREGTQ
Sbjct:    1 MTKGTSSFGKRHNKTHTLCRRCGRSSYHIQKSTCAQCGYPAAKLRSYNWSVKAKRRKTTGTGRMQHLKVVRRRFRNGFREGTQ 83          
BLAST of CX671267 vs. ExPASy Swiss-Prot
Match: RL37A_YEAST (60S ribosomal protein L37-A OS=Saccharomyces cerevisiae GN=RPL37A PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 1.920e-31
Identity = 59/82 (71.95%), Postives = 69/82 (84.15%), Query Frame = 3
Query:   27 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 272
            MGKGT SFGKR NK+HTLC RCGRRSFH+QK  C++C YPAA+ R+YNW  KA RR TTGTGRMRYL+HV RRFK+GF+ G+
Sbjct:    1 MGKGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPAAKTRSYNWGAKAKRRHTTGTGRMRYLKHVSRRFKNGFQTGS 82          
BLAST of CX671267 vs. ExPASy Swiss-Prot
Match: RL37_SPOFR (60S ribosomal protein L37 OS=Spodoptera frugiperda GN=RpL37 PE=3 SV=3)

HSP 1 Score: 134.035 bits (336), Expect = 4.278e-31
Identity = 60/81 (74.07%), Postives = 71/81 (87.65%), Query Frame = 3
Query:   27 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREG 269
            M KGT SFGKRRNKTHTLC RCGR S+H+QKS+CA C YPAA+ R+Y+WSVKA RRKTTGTGRMR+L+ V RRF++GF+EG
Sbjct:    1 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKTTGTGRMRHLKIVRRRFRNGFKEG 81          
BLAST of CX671267 vs. ExPASy Swiss-Prot
Match: RL37B_YEAST (60S ribosomal protein L37-B OS=Saccharomyces cerevisiae GN=RPL37B PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.245e-30
Identity = 57/82 (69.51%), Postives = 70/82 (85.37%), Query Frame = 3
Query:   27 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 272
            MGKGT SFGKR NK+HTLC RCGRRSFH+QK  C++C YP+A+ R++NW+ KA RR TTGTGRMRYL+HV RRFK+GF+ G+
Sbjct:    1 MGKGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPSAKTRSHNWAAKAKRRHTTGTGRMRYLKHVSRRFKNGFQTGS 82          
BLAST of CX671267 vs. ExPASy Swiss-Prot
Match: RL37_RAT (60S ribosomal protein L37 OS=Rattus norvegicus GN=Rpl37 PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 2.773e-30
Identity = 60/82 (73.17%), Postives = 66/82 (80.49%), Query Frame = 3
Query:   27 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 272
            M KGT SFGKRRNKTHTLC RCG +++HLQKS C  C YPA RKR YNWS KA RR TTGTGRMR+L+ V RRF+ GFREGT
Sbjct:    1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGT 82          
BLAST of CX671267 vs. ExPASy Swiss-Prot
Match: RL37_MOUSE (60S ribosomal protein L37 OS=Mus musculus GN=Rpl37 PE=2 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 2.773e-30
Identity = 60/82 (73.17%), Postives = 66/82 (80.49%), Query Frame = 3
Query:   27 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 272
            M KGT SFGKRRNKTHTLC RCG +++HLQKS C  C YPA RKR YNWS KA RR TTGTGRMR+L+ V RRF+ GFREGT
Sbjct:    1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGT 82          
BLAST of CX671267 vs. ExPASy Swiss-Prot
Match: RL37_HUMAN (60S ribosomal protein L37 OS=Homo sapiens GN=RPL37 PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 2.773e-30
Identity = 60/82 (73.17%), Postives = 66/82 (80.49%), Query Frame = 3
Query:   27 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 272
            M KGT SFGKRRNKTHTLC RCG +++HLQKS C  C YPA RKR YNWS KA RR TTGTGRMR+L+ V RRF+ GFREGT
Sbjct:    1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGT 82          
The following BLAST results are available for this feature:
BLAST of CX671267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL373_ARATH4.125e-4292.7760S ribosomal protein L37-3 OS=Arabidopsis thalian... [more]
RL371_ARATH2.047e-4192.7760S ribosomal protein L37-1 OS=Arabidopsis thalian... [more]
RL372_ARATH3.492e-4191.5760S ribosomal protein L37-2 OS=Arabidopsis thalian... [more]
RL371_DROME8.620e-3274.70Probable 60S ribosomal protein L37-A OS=Drosophila... [more]
RL37A_YEAST1.920e-3171.9560S ribosomal protein L37-A OS=Saccharomyces cerev... [more]
RL37_SPOFR4.278e-3174.0760S ribosomal protein L37 OS=Spodoptera frugiperda... [more]
RL37B_YEAST1.245e-3069.5160S ribosomal protein L37-B OS=Saccharomyces cerev... [more]
RL37_RAT2.773e-3073.1760S ribosomal protein L37 OS=Rattus norvegicus GN=... [more]
RL37_MOUSE2.773e-3073.1760S ribosomal protein L37 OS=Mus musculus GN=Rpl37... [more]
RL37_HUMAN2.773e-3073.1760S ribosomal protein L37 OS=Homo sapiens GN=RPL37... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10A05_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10A05-A10-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671267 ID=CX671267|Name=CX671267|organism=Citrus sinensis|type=EST|length=539bp
CTTTCCTCTGCTTCGCATACGCTTCGATGGGTAAGGGAACAGGGAGTTTC
GGTAAGAGGAGAAACAAGACACACACTTTGTGTGTGCGATGTGGCCGTCG
CAGCTTCCATCTTCAGAAGAGTCGTTGCGCTGCTTGTGCTTACCCCGCTG
CTCGCAAGAGAACGTATAACTGGAGTGTGAAGGCAATCCGAAGAAAGACC
ACTGGAACCGGCAGGATGAGGTATCTGCGCCATGTACCTCGCAGGTTCAA
GAGCGGCTTCAGAGAAGGTACTCAGGCAGCACCAAGGAAGAAGGGAGCGG
CTGCCTCTGCTTAAGGAGTTGAAGGGTAATTTTGGGCGTGAATCAGCACC
TCATTATAGATTTAGTCTTCTTTAATGTGTGGAGACAAGATTCATGGGAA
CATAATTTTGAAAAAGGATGTTATTTGTTTTTGTGCTTAGTTGTTTTCAA
TTATGATTACTCTGTAGTCTTTTTCAATTTTGGACAAGATGAATGAGTTT
ATTGTTGTTTGACCTCCTTTNANAAAAAAAAAAAAAAAA
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