CX303408

Overview
NameCX303408
Unique NameCX303408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6220 contig Csv1_Contig6220:8..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX303408 vs. ExPASy Swiss-Prot
Match: PMM_SOYBN (Phosphomannomutase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 350.517 bits (898), Expect = 5.109e-96
Identity = 171/190 (90.00%), Postives = 182/190 (95.79%), Query Frame = 3
Query:  162 MAARKQGLLALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDR 731
            MAAR+ GL+ALFDVDGTLTAPRK  TP+ML FM+ELRKVVTVGVVGGSDL KISEQLG TV ++YDYVFSENGLVAHK+GKLIGTQSLKSFLG EKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLN+SPIGRNCSQEERDEFE+YDK+HNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWD+
Sbjct:    1 MAARRPGLIALFDVDGTLTAPRKVVTPEMLTFMQELRKVVTVGVVGGSDLIKISEQLGSTVTNDYDYVFSENGLVAHKEGKLIGTQSLKSFLGEEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNVSPIGRNCSQEERDEFEKYDKVHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDK 190          

HSP 2 Score: 22.3274 bits (46), Expect = 5.109e-96
Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = 2
Query:  719 GMGQTYCLRYL 751
            G  +TYCLRYL
Sbjct:  187 GWDKTYCLRYL 197          
BLAST of CX303408 vs. ExPASy Swiss-Prot
Match: PMM_TOBAC (Phosphomannomutase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 343.969 bits (881), Expect = 4.691e-94
Identity = 169/190 (88.95%), Postives = 179/190 (94.21%), Query Frame = 3
Query:  162 MAARKQGLLALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDR 731
            MAARK GL+ALFDVDGTLTAPRK  TP+ML+FM+ELRKVVTVGVVGGSDL KISEQLGKTV  +YDY FSENGLVAHKDGKLIGTQSLKSFLG EKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLN+SPIGR+CSQEERDEFE+YDK+H IR  MVSVLREKFAHLNLTFSIGGQISFDVFPQGWD+
Sbjct:    1 MAARKPGLIALFDVDGTLTAPRKEVTPEMLKFMKELRKVVTVGVVGGSDLVKISEQLGKTVTTDYDYCFSENGLVAHKDGKLIGTQSLKSFLGDEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNVSPIGRDCSQEERDEFEKYDKVHKIRQTMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDK 190          

HSP 2 Score: 22.3274 bits (46), Expect = 4.691e-94
Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = 2
Query:  719 GMGQTYCLRYL 751
            G  +TYCLRYL
Sbjct:  187 GWDKTYCLRYL 197          
BLAST of CX303408 vs. ExPASy Swiss-Prot
Match: PMM_SOLLC (Phosphomannomutase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 2.530e-92
Identity = 167/190 (87.89%), Postives = 177/190 (93.16%), Query Frame = 3
Query:  162 MAARKQGLLALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDR 731
            MAARK GL+ALFDVDGTLTAPRK +TPQML+FM+ELRKVVTVGVVGGSDL KISEQLG TV ++YDYVFSENGLVAHKDGKLIG QSLKS LG EKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLN+SPIGRNCSQEERDEFE+YDK+  IR  MVSVLREKFAH NLTFSIGGQISFDVFPQGWD+
Sbjct:    1 MAARKAGLIALFDVDGTLTAPRKESTPQMLKFMQELRKVVTVGVVGGSDLVKISEQLGNTVTNDYDYVFSENGLVAHKDGKLIGKQSLKSHLGDEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNVSPIGRNCSQEERDEFEKYDKVQKIRETMVSVLREKFAHFNLTFSIGGQISFDVFPQGWDK 190          

HSP 2 Score: 22.3274 bits (46), Expect = 2.530e-92
Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = 2
Query:  719 GMGQTYCLRYL 751
            G  +TYCLRYL
Sbjct:  187 GWDKTYCLRYL 197          
BLAST of CX303408 vs. ExPASy Swiss-Prot
Match: PMM_WHEAT (Phosphomannomutase OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 4.307e-92
Identity = 164/190 (86.32%), Postives = 181/190 (95.26%), Query Frame = 3
Query:  165 AARKQ-GLLALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDR 731
            AARK  G+LALFDVDGTLTAPRK  TP+MLEFM+ LR+ VTVGVVGGSDL KISEQLGK+VI +YDYVFSENGLVAHKDGKLIGTQSLK++LG ++LKEFINFTLHYIADLDIPIKRGTFIEFRSGM+N+SPIGRNCSQEERD+FE+YDK+HN+RPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWD+
Sbjct:    3 AARKDAGVLALFDVDGTLTAPRKEVTPEMLEFMKRLRENVTVGVVGGSDLVKISEQLGKSVITDYDYVFSENGLVAHKDGKLIGTQSLKTYLGDDQLKEFINFTLHYIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDK 192          

HSP 2 Score: 22.3274 bits (46), Expect = 4.307e-92
Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = 2
Query:  719 GMGQTYCLRYL 751
            G  +TYCLRYL
Sbjct:  189 GWDKTYCLRYL 199          
BLAST of CX303408 vs. ExPASy Swiss-Prot
Match: PMM_ORYSJ (Phosphomannomutase OS=Oryza sativa subsp. japonica GN=PMM PE=2 SV=2)

HSP 1 Score: 336.65 bits (862), Expect = 7.330e-92
Identity = 165/191 (86.39%), Postives = 181/191 (94.76%), Query Frame = 3
Query:  162 MAARKQ-GLLALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDR 731
            MAARK  G+LALFDVDGTLTAPRK  TP+ML+FM++LR+ VTVGVVGGSDL KISEQLGK+V  +YDY FSENGLVAHK+G+LIGTQSLKSFLG ++LKEFINFTLHYIADLDIPIKRGTFIEFRSGMLN+SPIGRNCSQEERDEFE+YDK+HNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWD+
Sbjct:    1 MAARKNAGVLALFDVDGTLTAPRKVVTPEMLQFMKQLREHVTVGVVGGSDLVKISEQLGKSVTTDYDYCFSENGLVAHKNGELIGTQSLKSFLGDDQLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNVSPIGRNCSQEERDEFEKYDKVHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDK 191          

HSP 2 Score: 22.3274 bits (46), Expect = 7.330e-92
Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = 2
Query:  719 GMGQTYCLRYL 751
            G  +TYCLRYL
Sbjct:  188 GWDKTYCLRYL 198          
BLAST of CX303408 vs. ExPASy Swiss-Prot
Match: PMM_ORYSI (Phosphomannomutase OS=Oryza sativa subsp. indica GN=PMM PE=3 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 7.330e-92
Identity = 165/191 (86.39%), Postives = 181/191 (94.76%), Query Frame = 3
Query:  162 MAARKQ-GLLALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDR 731
            MAARK  G+LALFDVDGTLTAPRK  TP+ML+FM++LR+ VTVGVVGGSDL KISEQLGK+V  +YDY FSENGLVAHK+G+LIGTQSLKSFLG ++LKEFINFTLHYIADLDIPIKRGTFIEFRSGMLN+SPIGRNCSQEERDEFE+YDK+HNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWD+
Sbjct:    1 MAARKNAGVLALFDVDGTLTAPRKVVTPEMLQFMKQLREHVTVGVVGGSDLVKISEQLGKSVTTDYDYCFSENGLVAHKNGELIGTQSLKSFLGDDQLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNVSPIGRNCSQEERDEFEKYDKVHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDK 191          

HSP 2 Score: 22.3274 bits (46), Expect = 7.330e-92
Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = 2
Query:  719 GMGQTYCLRYL 751
            G  +TYCLRYL
Sbjct:  188 GWDKTYCLRYL 198          
BLAST of CX303408 vs. ExPASy Swiss-Prot
Match: PMM_ARATH (Phosphomannomutase OS=Arabidopsis thaliana GN=PMM PE=1 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 1.744e-89
Identity = 159/190 (83.68%), Postives = 177/190 (93.16%), Query Frame = 3
Query:  162 MAARKQGLLALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDR 731
            MAA+  G++ALFDVDGTLTAPRK ATP++L+F+RELRKVVT+GVVGGSDLSKISEQLGKTV ++YDY FSENGLVAHKDGK IG QSLK  LG +KLKE INFTLHYIADLDIPIKRGTFIEFR+GMLN+SPIGRNCSQEERDEFERYDK+ NIRPKMV+ LRE+FAHLNLTFSIGGQISFDVFP+GWD+
Sbjct:    1 MAAKIPGVIALFDVDGTLTAPRKEATPELLDFIRELRKVVTIGVVGGSDLSKISEQLGKTVTNDYDYCFSENGLVAHKDGKSIGIQSLKLHLGDDKLKELINFTLHYIADLDIPIKRGTFIEFRNGMLNVSPIGRNCSQEERDEFERYDKVQNIRPKMVAELRERFAHLNLTFSIGGQISFDVFPKGWDK 190          
BLAST of CX303408 vs. ExPASy Swiss-Prot
Match: PMM1_DICDI (Phosphomannomutase 1 OS=Dictyostelium discoideum GN=pmmA PE=3 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.004e-69
Identity = 122/182 (67.03%), Postives = 150/182 (82.42%), Query Frame = 3
Query:  186 LALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDR 731
            + LFDVDGTLT PR   TP+M +F+  LR  V +GVVGGSD++KI EQLG+  I+E+ Y+F+ENGL++ KDG L+ TQ +K FLG E +K+FINF LHYIADLDIPIKRGTF+EFR+GM+NISPIGRNCSQ+ER+EFE+YD  H IRP MVS+L+EKF  L L +SIGGQISFDVFP GWD+
Sbjct:    8 ICLFDVDGTLTKPRNVITPEMKDFLAGLRTKVELGVVGGSDINKIKEQLGENCINEFHYLFAENGLLSFKDGSLLATQDIKKFLGEENIKKFINFVLHYIADLDIPIKRGTFVEFRNGMINISPIGRNCSQQEREEFEKYDLEHKIRPTMVSILKEKFQSLGLQYSIGGQISFDVFPIGWDK 189          
BLAST of CX303408 vs. ExPASy Swiss-Prot
Match: PMM2_DICDI (Phosphomannomutase 2 OS=Dictyostelium discoideum GN=pmmB PE=3 SV=2)

HSP 1 Score: 251.521 bits (641), Expect = 3.538e-66
Identity = 116/188 (61.70%), Postives = 149/188 (79.26%), Query Frame = 3
Query:  168 ARKQGLLALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDR 731
            ++ +  + LFDVD TLT PR A T +M E +  LR  + +GVVGGS+ +KI EQLG+  I+++DYVF+ENGL+A+KDG L+  Q +K +LG E +K+FINF LHY+ADLDIPIKRGTF+EFR+GMLNISPIGRNCSQ+ER+EFE+YD  H IR  MVS+L+E+F    L +SIGGQISFDVFP GWD+
Sbjct:    2 SQNKNTICLFDVDDTLTKPRNAITNEMKELLASLRTKIKIGVVGGSNFNKIKEQLGENFINDFDYVFAENGLIAYKDGSLLEIQDIKKYLGEENIKKFINFVLHYVADLDIPIKRGTFVEFRNGMLNISPIGRNCSQQEREEFEKYDLEHKIRSTMVSILKEEFKSFGLQYSIGGQISFDVFPIGWDK 189          
BLAST of CX303408 vs. ExPASy Swiss-Prot
Match: PMM_SCHPO (Phosphomannomutase OS=Schizosaccharomyces pombe GN=pmm1 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.065e-62
Identity = 118/185 (63.78%), Postives = 145/185 (78.38%), Query Frame = 3
Query:  186 LALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQL---GKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDR 731
            L LFDVDGTLT  R + +P+MLE ++ LRKVV +G VGGSDLSK  EQL   G+ VID +DY F+ENGL A++ G+ + +QS  ++LG EK ++ +NF LHYIADLDIP+KRGTFIEFR+GM+NISP+GRN + EER+EFER+DK   IR  MV VLREKF    LTFSIGGQISFDVFP GWD+
Sbjct:   15 LVLFDVDGTLTPARLSVSPEMLETLQNLRKVVAIGFVGGSDLSKQQEQLSVNGENVIDSFDYAFAENGLTAYRYGQQLASQSFIAWLGEEKYQKLVNFCLHYIADLDIPVKRGTFIEFRNGMINISPVGRNANTEERNEFERFDKGRKIRATMVDVLREKFKDYGLTFSIGGQISFDVFPAGWDK 199          
The following BLAST results are available for this feature:
BLAST of CX303408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PMM_SOYBN5.109e-9690.00Phosphomannomutase OS=Glycine max PE=2 SV=1[more]
PMM_TOBAC4.691e-9488.95Phosphomannomutase OS=Nicotiana tabacum PE=2 SV=1[more]
PMM_SOLLC2.530e-9287.89Phosphomannomutase OS=Solanum lycopersicum PE=2 SV... [more]
PMM_WHEAT4.307e-9286.32Phosphomannomutase OS=Triticum aestivum PE=2 SV=1[more]
PMM_ORYSJ7.330e-9286.39Phosphomannomutase OS=Oryza sativa subsp. japonica... [more]
PMM_ORYSI7.330e-9286.39Phosphomannomutase OS=Oryza sativa subsp. indica G... [more]
PMM_ARATH1.744e-8983.68Phosphomannomutase OS=Arabidopsis thaliana GN=PMM ... [more]
PMM1_DICDI2.004e-6967.03Phosphomannomutase 1 OS=Dictyostelium discoideum G... [more]
PMM2_DICDI3.538e-6661.70Phosphomannomutase 2 OS=Dictyostelium discoideum G... [more]
PMM_SCHPO1.065e-6263.78Phosphomannomutase OS=Schizosaccharomyces pombe GN... [more]

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Properties
Property NameValue
Genbank descriptionC08030H08SK PhyRootSw1 Citrus sinensis cDNA clone C08030H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX303408 ID=CX303408; Name=CX303408; organism=Citrus sinensis; type=EST; length=751bp
ACGAGGGAATCAATTACTTCCCCGTAACTTCCCAGCTTCCGCCATTCAAG
ATTTCAAGATCAAGATCTGCTTTAAATTCCGCGTCCAAATTCAAAGCTCT
GCGCTCTACTCACGCTATTCATTCACTTCTATTCAGATAAATCTATACAT
TTCAAACTCCAATGGCTGCTAGGAAGCAAGGTTTATTAGCTCTCTTTGAT
GTTGACGGAACTCTCACGGCTCCGAGAAAGGCGGCAACACCACAAATGTT
AGAGTTCATGCGGGAACTGAGAAAGGTTGTTACAGTTGGAGTCGTCGGTG
GATCTGATCTTTCTAAGATATCAGAGCAGCTTGGGAAGACAGTTATTGAT
GAATACGATTATGTGTTTTCTGAGAATGGTCTTGTGGCTCATAAGGATGG
GAAATTAATTGGCACACAGAGCTTGAAATCATTTCTTGGAGGCGAAAAGC
TCAAGGAATTCATAAATTTTACTCTTCATTACATTGCTGACTTGGACATT
CCAATTAAAAGGGGAACTTTCATTGAATTCCGAAGTGGGATGCTTAATAT
TTCACCAATTGGGCGAAACTGCAGCCAAGAAGAAAGGGACGAGTTTGAGA
GGTATGACAAGATTCACAATATACGGCCAAAAATGGTATCTGTGCTTCGG
GAGAAGTTTGCTCACCTTAACTTGACATTTTCAATTGGAGGACAGATAAG
CTTTGATGTGTTTCCCCAGGGATGGGACAGACATACTGCTTGAGATACCT
T
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