CX303406

Overview
NameCX303406
Unique NameCX303406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RM24_DANRE (Probable 39S ribosomal protein L24, mitochondrial OS=Danio rerio GN=mrpl24 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.337e-19
Identity = 55/142 (38.73%), Postives = 83/142 (58.45%), Query Frame = 3
Query:   39 SQRWNIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPKPDFSAFRR-----PRTKALGQKDTPADEVVKVTFS 449
            ++ W +V+GD VEV  G +KG++GKV  +IR  +  I+EG+N   R V  R     G  +     +   ++ LIDP+D KPT+I  R+T +G +VRVS RTG IIPKP    F+R     P+    G KDT  ++ ++ T++
Sbjct:   51 NEDWPVVRGDTVEVLSGKEKGKQGKVAQVIRARNWVILEGLNTHYRYV-GRSGDYRGTYLASEAPLLLKDIALIDPTDRKPTEIQWRYTEEGERVRVSVRTGRIIPKP---VFQRKDGIVPQQWKDGPKDTSPEDTLQKTYT 188          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RM24_MOUSE (39S ribosomal protein L24, mitochondrial OS=Mus musculus GN=Mrpl24 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.263e-18
Identity = 49/135 (36.30%), Postives = 77/135 (57.04%), Query Frame = 3
Query:   48 WNIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPKPDFSAFRR--PRTKALGQKDTPADEVVKVTF 446
            W++  GD VE+ +G   G++GKV+ ++R+ +  ++EG+N   R  I R     G  I     + +  + L+DP D KPT+I  R+T  G +VRVS R+G IIPKP+F       P T   G KDT  ++ ++ T+
Sbjct:   54 WHLFCGDMVEILEGKDAGKQGKVVQVVRQRNWVVLEGLNTHYR-YIGRTKDHRGTMIASEAPLLHHQVKLVDPVDRKPTEIQWRFTEAGERVRVSTRSGRIIPKPEFPRADGIVPETWTDGPKDTSVEDALERTY 187          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RM24_RAT (39S ribosomal protein L24, mitochondrial OS=Rattus norvegicus GN=Mrpl24 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.068e-17
Identity = 49/135 (36.30%), Postives = 77/135 (57.04%), Query Frame = 3
Query:   48 WNIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPKPDFSAFRR--PRTKALGQKDTPADEVVKVTF 446
            W++  GD VE+ +G   G++GKV+ ++R+ +  ++EG+N   R  I R     G  I     + +  + L+DP D KPT+I  R+T  G +VRVS R+G IIPKP+F       P T   G KDT  ++ ++ T+
Sbjct:   54 WHLFCGDMVEILEGKDAGKQGKVVQVVRQRNWVVLEGLNTHYR-YIGRTKDHRGTMIPSEAPLLHHQVKLVDPVDRKPTEIQWRFTEAGERVRVSTRSGRIIPKPEFPRADGIVPETWTDGPKDTSVEDALERTY 187          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RM24_BOVIN (39S ribosomal protein L24, mitochondrial OS=Bos taurus GN=MRPL24 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.925e-17
Identity = 47/135 (34.81%), Postives = 77/135 (57.04%), Query Frame = 3
Query:   48 WNIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPKPDFSAFRR--PRTKALGQKDTPADEVVKVTF 446
            W++  GD VE+ +G   G++GKV+ +IR+ +  ++EG+N   R V   +    G  +     + ++ + L+DP D KPT++  R+T  G +VRVS R+G IIPKPD        P T   G KDT  ++ ++ T+
Sbjct:   54 WHLFCGDRVEILEGKDAGKQGKVVQVIRQRNWVVVEGLNTHYRYVGKTVD-FRGTMVPSEAPLLHNQVKLVDPMDRKPTEVEWRFTEAGERVRVSTRSGRIIPKPDVPRADGIVPETWIDGPKDTSVEDALEKTY 187          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RM24_HUMAN (39S ribosomal protein L24, mitochondrial OS=Homo sapiens GN=MRPL24 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.631e-16
Identity = 48/135 (35.56%), Postives = 75/135 (55.56%), Query Frame = 3
Query:   48 WNIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPKPDFSAFRR--PRTKALGQKDTPADEVVKVTF 446
            W +  GD VE+ +G   G++GKV+ +IR+ +  ++ G+N   R  I +     G  I     + +  + L+DP D KPT+I  R+T  G +VRVS R+G IIPKP+F       P T   G KDT  ++ ++ T+
Sbjct:   54 WYLFCGDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYR-YIGKTMDYRGTMIPSEAPLLHRQVKLVDPMDRKPTEIEWRFTEAGERVRVSTRSGRIIPKPEFPRADGIVPETWIDGPKDTSVEDALERTY 187          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RM24_XENLA (Probable 39S ribosomal protein L24, mitochondrial OS=Xenopus laevis GN=mrpl24 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.000e-15
Identity = 49/139 (35.25%), Postives = 75/139 (53.96%), Query Frame = 3
Query:   42 QRWNIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPKPDFSAFRR----PRTKALGQKDTPADEVVKVTF 446
            + W   +GD VEV  G   G++GKV  ++R  +  +++G+N   R V  R     G  +     +  + + LIDP+D KPT+I  R+T +G +VRVS R+G IIPKP     RR    P     G KDT  ++ ++ T+
Sbjct:   52 EEWQYFRGDTVEVLHGKDAGKQGKVTQVVRARNWVVVDGLNTHFRYV-GRTDEYRGTYVASEGPLLLNQVSLIDPTDRKPTEIEWRYTEEGERVRVSARSGRIIPKPVLQ--RRDGIIPEQWKDGPKDTSVEDALERTY 187          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RM24_DROPS (Probable 39S ribosomal protein L24, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=mRpL24 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.800e-15
Identity = 51/138 (36.96%), Postives = 75/138 (54.35%), Query Frame = 3
Query:   48 WNIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSN-MMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPKPDFS----AFRRPRTKALGQKDTPADEVVKVTF 446
            W+  +GD +EV  G  KG++G V  +I + +  I+EG+N   R V       PG  I     +H  N + L+DPSD   T+   R+T +G KVRVS R+G IIP P+ +     ++ P      +KDTPA  V ++TF
Sbjct:   82 WSFFRGDRIEVLVGKDKGKQGIVTQVIPERNWVIVEGLNWHYRRV-GAEKEFPGIIIKSEAPLHVLNDIRLVDPSDLLGTEFEWRFTEEGEKVRVSMRSGRIIPIPETNNQTHDYKTPNAYIEREKDTPAAVVGEITF 218          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_GLUOX (50S ribosomal protein L24 OS=Gluconobacter oxydans GN=rplX PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.465e-15
Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = 3
Query:   54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPR-TVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353
            I KGD V V  G  +G RG+VLA++ K  +A++ GV +  R T  NR+ G  G  I R   IH SN+ L+DP   KPT++  R   DG KVRV+K TG +I
Sbjct:    5 IKKGDQVLVLSGKSRGVRGEVLAVMPKAEKAVVRGVAVAKRHTKPNRMGG-EGGIIEREMPIHLSNLKLVDPKSGKPTRVGFRILEDGRKVRVAKATGEVI 104          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_FRASN (50S ribosomal protein L24 OS=Frankia sp. (strain EAN1pec) GN=rplX PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.465e-15
Identity = 40/100 (40.00%), Postives = 62/100 (62.00%), Query Frame = 3
Query:   54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPR-TVINRIS--GVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTG 344
            I KGD V++  G  +G +GKV+  I   ++ ++EG N   R T + + S     G  + +   IH SN+M++DPSD +PT++  R+  DGTKVR+S+RTG
Sbjct:    6 IKKGDTVQIVTGKDRGLKGKVIRAIPDQNKVVVEGANRVTRHTRVQQSSRGSQSGGIVTQEAPIHVSNVMIVDPSDGRPTRVGYRFNDDGTKVRISRRTG 105          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_RICPU (50S ribosomal protein L24 OS=Rickettsia peacockii (strain Rustic) GN=rplX PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.444e-14
Identity = 43/103 (41.75%), Postives = 65/103 (63.11%), Query Frame = 3
Query:   54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNM-RPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPK 359
            + KGD V V  G  KG++GK+L +  ++S+ I+ GVN+ +  T  N++S   G  I +   IH SN+  IDP    PTK+A ++  DG+KVRV+K++G II K
Sbjct:    6 VKKGDEVVVITGKHKGKKGKILKVFPEDSKVIVSGVNVVKKHTKSNQMS--EGGIITKELPIHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAKKSGEIIGK 106          
The following BLAST results are available for this feature:
BLAST of CX303406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
RM24_DANRE4.337e-1938.73Probable 39S ribosomal protein L24, mitochondrial ... [more]
RM24_MOUSE6.263e-1836.3039S ribosomal protein L24, mitochondrial OS=Mus mu... [more]
RM24_RAT1.068e-1736.3039S ribosomal protein L24, mitochondrial OS=Rattus... [more]
RM24_BOVIN6.925e-1734.8139S ribosomal protein L24, mitochondrial OS=Bos ta... [more]
RM24_HUMAN2.631e-1635.5639S ribosomal protein L24, mitochondrial OS=Homo s... [more]
RM24_XENLA1.000e-1535.25Probable 39S ribosomal protein L24, mitochondrial ... [more]
RM24_DROPS3.800e-1536.96Probable 39S ribosomal protein L24, mitochondrial ... [more]
RL24_GLUOX8.465e-1545.5450S ribosomal protein L24 OS=Gluconobacter oxydans... [more]
RL24_FRASN8.465e-1540.0050S ribosomal protein L24 OS=Frankia sp. (strain E... [more]
RL24_RICPU1.444e-1441.7550S ribosomal protein L24 OS=Rickettsia peacockii ... [more]

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Properties
Property NameValue
Genbank descriptionC08030H06SK PhyRootSw1 Citrus sinensis cDNA clone C08030H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX303406 ID=CX303406; Name=CX303406; organism=Citrus sinensis; type=EST; length=577bp
GAGGCCTCGTGCCGAATTCGGCACGAGGGCTTGATGTATCACAACGTTGG
AACATTGTGAAGGGTGATTTTGTTGAAGTCACCCAAGGTCCACAGAAAGG
GCAAAGGGGAAAAGTTCTTGCAATTATCCGTAAGAATAGTCGTGCAATCA
TAGAGGGAGTCAATATGCGTCCTCGTACTGTTATCAATCGGATCAGTGGT
GTTCCTGGCAAAACTATTATTCGACCTTGCTCTATTCATTACTCAAATAT
GATGTTGATCGATCCTTCAGACAGTAAACCTACAAAAATTGCCCGAAGAT
GGACTGCCGATGGTACCAAGGTCCGAGTATCAAAAAGAACTGGTCATATT
ATCCCGAAACCTGATTTTTCTGCCTTTCGAAGGCCACGCACTAAAGCACT
CGGTCAAAAGGATACTCCAGCAGATGAAGTTGTGAAAGTCACGTTTTCTG
AGTACGCAATGTATCTTCCTTATATCTACGCGAGAGCCAATATTGAAGGC
AAGAGCATTGAAGTGATCAATAATGACCAAAAATAAATCATAACTTTGTT
CGTCCTTGTAAATTCACCAAAACTTTT
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