CX303406
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RM24_DANRE (Probable 39S ribosomal protein L24, mitochondrial OS=Danio rerio GN=mrpl24 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 4.337e-19 Identity = 55/142 (38.73%), Postives = 83/142 (58.45%), Query Frame = 3 Query: 39 SQRWNIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPKPDFSAFRR-----PRTKALGQKDTPADEVVKVTFS 449 ++ W +V+GD VEV G +KG++GKV +IR + I+EG+N R V R G + + ++ LIDP+D KPT+I R+T +G +VRVS RTG IIPKP F+R P+ G KDT ++ ++ T++ Sbjct: 51 NEDWPVVRGDTVEVLSGKEKGKQGKVAQVIRARNWVILEGLNTHYRYV-GRSGDYRGTYLASEAPLLLKDIALIDPTDRKPTEIQWRYTEEGERVRVSVRTGRIIPKP---VFQRKDGIVPQQWKDGPKDTSPEDTLQKTYT 188
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RM24_MOUSE (39S ribosomal protein L24, mitochondrial OS=Mus musculus GN=Mrpl24 PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 6.263e-18 Identity = 49/135 (36.30%), Postives = 77/135 (57.04%), Query Frame = 3 Query: 48 WNIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPKPDFSAFRR--PRTKALGQKDTPADEVVKVTF 446 W++ GD VE+ +G G++GKV+ ++R+ + ++EG+N R I R G I + + + L+DP D KPT+I R+T G +VRVS R+G IIPKP+F P T G KDT ++ ++ T+ Sbjct: 54 WHLFCGDMVEILEGKDAGKQGKVVQVVRQRNWVVLEGLNTHYR-YIGRTKDHRGTMIASEAPLLHHQVKLVDPVDRKPTEIQWRFTEAGERVRVSTRSGRIIPKPEFPRADGIVPETWTDGPKDTSVEDALERTY 187
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RM24_RAT (39S ribosomal protein L24, mitochondrial OS=Rattus norvegicus GN=Mrpl24 PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.068e-17 Identity = 49/135 (36.30%), Postives = 77/135 (57.04%), Query Frame = 3 Query: 48 WNIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPKPDFSAFRR--PRTKALGQKDTPADEVVKVTF 446 W++ GD VE+ +G G++GKV+ ++R+ + ++EG+N R I R G I + + + L+DP D KPT+I R+T G +VRVS R+G IIPKP+F P T G KDT ++ ++ T+ Sbjct: 54 WHLFCGDMVEILEGKDAGKQGKVVQVVRQRNWVVLEGLNTHYR-YIGRTKDHRGTMIPSEAPLLHHQVKLVDPVDRKPTEIQWRFTEAGERVRVSTRSGRIIPKPEFPRADGIVPETWTDGPKDTSVEDALERTY 187
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RM24_BOVIN (39S ribosomal protein L24, mitochondrial OS=Bos taurus GN=MRPL24 PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 6.925e-17 Identity = 47/135 (34.81%), Postives = 77/135 (57.04%), Query Frame = 3 Query: 48 WNIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPKPDFSAFRR--PRTKALGQKDTPADEVVKVTF 446 W++ GD VE+ +G G++GKV+ +IR+ + ++EG+N R V + G + + ++ + L+DP D KPT++ R+T G +VRVS R+G IIPKPD P T G KDT ++ ++ T+ Sbjct: 54 WHLFCGDRVEILEGKDAGKQGKVVQVIRQRNWVVVEGLNTHYRYVGKTVD-FRGTMVPSEAPLLHNQVKLVDPMDRKPTEVEWRFTEAGERVRVSTRSGRIIPKPDVPRADGIVPETWIDGPKDTSVEDALEKTY 187
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RM24_HUMAN (39S ribosomal protein L24, mitochondrial OS=Homo sapiens GN=MRPL24 PE=1 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 2.631e-16 Identity = 48/135 (35.56%), Postives = 75/135 (55.56%), Query Frame = 3 Query: 48 WNIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPKPDFSAFRR--PRTKALGQKDTPADEVVKVTF 446 W + GD VE+ +G G++GKV+ +IR+ + ++ G+N R I + G I + + + L+DP D KPT+I R+T G +VRVS R+G IIPKP+F P T G KDT ++ ++ T+ Sbjct: 54 WYLFCGDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYR-YIGKTMDYRGTMIPSEAPLLHRQVKLVDPMDRKPTEIEWRFTEAGERVRVSTRSGRIIPKPEFPRADGIVPETWIDGPKDTSVEDALERTY 187
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RM24_XENLA (Probable 39S ribosomal protein L24, mitochondrial OS=Xenopus laevis GN=mrpl24 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.000e-15 Identity = 49/139 (35.25%), Postives = 75/139 (53.96%), Query Frame = 3 Query: 42 QRWNIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPKPDFSAFRR----PRTKALGQKDTPADEVVKVTF 446 + W +GD VEV G G++GKV ++R + +++G+N R V R G + + + + LIDP+D KPT+I R+T +G +VRVS R+G IIPKP RR P G KDT ++ ++ T+ Sbjct: 52 EEWQYFRGDTVEVLHGKDAGKQGKVTQVVRARNWVVVDGLNTHFRYV-GRTDEYRGTYVASEGPLLLNQVSLIDPTDRKPTEIEWRYTEEGERVRVSARSGRIIPKPVLQ--RRDGIIPEQWKDGPKDTSVEDALERTY 187
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RM24_DROPS (Probable 39S ribosomal protein L24, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=mRpL24 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 3.800e-15 Identity = 51/138 (36.96%), Postives = 75/138 (54.35%), Query Frame = 3 Query: 48 WNIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSN-MMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPKPDFS----AFRRPRTKALGQKDTPADEVVKVTF 446 W+ +GD +EV G KG++G V +I + + I+EG+N R V PG I +H N + L+DPSD T+ R+T +G KVRVS R+G IIP P+ + ++ P +KDTPA V ++TF Sbjct: 82 WSFFRGDRIEVLVGKDKGKQGIVTQVIPERNWVIVEGLNWHYRRV-GAEKEFPGIIIKSEAPLHVLNDIRLVDPSDLLGTEFEWRFTEEGEKVRVSMRSGRIIPIPETNNQTHDYKTPNAYIEREKDTPAAVVGEITF 218
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_GLUOX (50S ribosomal protein L24 OS=Gluconobacter oxydans GN=rplX PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 8.465e-15 Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = 3 Query: 54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPR-TVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353 I KGD V V G +G RG+VLA++ K +A++ GV + R T NR+ G G I R IH SN+ L+DP KPT++ R DG KVRV+K TG +I Sbjct: 5 IKKGDQVLVLSGKSRGVRGEVLAVMPKAEKAVVRGVAVAKRHTKPNRMGG-EGGIIEREMPIHLSNLKLVDPKSGKPTRVGFRILEDGRKVRVAKATGEVI 104
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_FRASN (50S ribosomal protein L24 OS=Frankia sp. (strain EAN1pec) GN=rplX PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 8.465e-15 Identity = 40/100 (40.00%), Postives = 62/100 (62.00%), Query Frame = 3 Query: 54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPR-TVINRIS--GVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTG 344 I KGD V++ G +G +GKV+ I ++ ++EG N R T + + S G + + IH SN+M++DPSD +PT++ R+ DGTKVR+S+RTG Sbjct: 6 IKKGDTVQIVTGKDRGLKGKVIRAIPDQNKVVVEGANRVTRHTRVQQSSRGSQSGGIVTQEAPIHVSNVMIVDPSDGRPTRVGYRFNDDGTKVRISRRTG 105
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_RICPU (50S ribosomal protein L24 OS=Rickettsia peacockii (strain Rustic) GN=rplX PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.444e-14 Identity = 43/103 (41.75%), Postives = 65/103 (63.11%), Query Frame = 3 Query: 54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNM-RPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPK 359 + KGD V V G KG++GK+L + ++S+ I+ GVN+ + T N++S G I + IH SN+ IDP PTK+A ++ DG+KVRV+K++G II K Sbjct: 6 VKKGDEVVVITGKHKGKKGKILKVFPEDSKVIVSGVNVVKKHTKSNQMS--EGGIITKELPIHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAKKSGEIIGK 106 The following BLAST results are available for this feature:
BLAST of CX303406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 163
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Sequences
The
following sequences are available for this feature:
EST sequence >CX303406 ID=CX303406; Name=CX303406; organism=Citrus sinensis; type=EST; length=577bpback to top |